Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 2058.1 1092 100.0
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1854.3 1092 89.8
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 1792.3 1090 87.3
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 0.0e+00 1768.1 1091 86.5
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1758.0 1092 87.2
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 0.0e+00 1746.9 1092 86.4
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 0.0e+00 1709.1 1063 86.8
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 0.0e+00 1701.8 1091 84.8
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 0.0e+00 1700.3 1090 83.3
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1699.1 1091 84.5
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1607.8 1120 77.8
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1191.0 1089 58.9
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1183.7 1093 56.4
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1174.1 1096 59.7
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1171.0 1096 58.9
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 1164.8 1092 58.2
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1161.7 1141 56.5
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1159.8 1096 57.8
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1156.4 1090 59.0
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1152.1 1099 56.9
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1150.2 1098 58.4
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1149.4 1092 58.2
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1147.9 1095 55.3
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1147.1 1093 56.9
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1143.3 1093 57.5
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1142.1 1090 57.8
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1140.9 1096 58.3
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1137.1 1094 58.1
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1135.6 1100 56.1
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1132.1 1102 55.0
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1129.0 1096 56.7
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1128.2 1097 55.8
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1127.9 1104 54.7
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 0.0e+00 1122.1 653 89.1
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1121.3 1094 57.7
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1117.8 1097 56.3
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1117.4 1096 56.4
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1112.8 1096 55.1
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1110.9 1101 54.8
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1110.9 1098 55.0
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1109.4 1105 54.3
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1105.9 1091 55.9
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1101.3 1112 55.4
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1094.0 1057 57.8
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1091.6 973 56.9
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1085.9 1097 54.8
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1085.5 1096 54.2
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1081.2 1058 55.8
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1075.8 1090 55.4
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 7.5e-312 1073.9 1097 53.4
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 5.2e-311 1071.2 1107 55.4
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 6.2e-309 1064.3 1086 54.3
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 1.1e-308 1063.5 1088 53.5
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 4.0e-308 1061.6 1099 53.3
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 1.2e-307 1060.1 1080 54.5
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.9e-305 1052.7 1095 53.5
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 1.5e-302 1043.1 1071 52.0
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 1.6e-301 1039.6 1085 53.7
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 3.9e-295 1018.5 1093 52.0
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 4.5e-291 1005.0 1092 52.5
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 2.9e-290 1002.3 1092 52.3
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 3.8e-290 1001.9 1074 53.5
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 7.9e-288 994.2 1197 47.6
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 6.7e-287 991.1 1090 51.0
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 8.8e-287 990.7 1090 51.6
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 8.2e-285 984.2 1096 52.1
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 1.1e-284 983.8 1111 52.7
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 5.3e-284 981.5 1093 52.0
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 2.2e-282 976.1 1113 51.4
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 8.5e-282 974.2 1103 50.8
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 8.8e-279 964.1 1096 52.7
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 1.1e-278 963.8 1095 52.5
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 8.5e-274 947.6 1012 50.5
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 4.7e-272 941.8 1080 48.2
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 1.4e-268 930.2 1179 48.4
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 1.1e-265 920.6 1091 49.1
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 7.2e-265 917.9 971 50.4
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 3.6e-264 915.6 1097 47.9
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 6.8e-263 911.4 1093 49.0
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 5.7e-262 908.3 1083 45.4
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 1.3e-261 907.1 1115 48.3
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 1.6e-240 837.0 1105 47.1
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 4.0e-223 779.2 1101 45.2
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 8.7e-210 734.9 1113 41.3
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.3e-201 706.4 611 60.2
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 7.1e-196 688.7 718 52.6
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.8e-194 684.1 1102 39.7
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.8e-194 684.1 1102 39.7
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 5.5e-188 662.5 441 84.1
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.7e-187 660.2 1132 38.2
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 1.8e-175 620.9 940 37.2
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.8e-159 567.8 1056 34.1
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 4.5e-158 563.1 631 51.7
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 1.1e-151 542.0 503 53.7
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 8.6e-141 505.8 431 59.4
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.5e-116 424.5 430 50.0
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 9.0e-98 362.8 806 30.1
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.2e-95 354.4 465 40.9
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 1.7e-80 305.4 440 46.6
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 1.5e-76 292.4 335 48.1
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 2.1e-75 288.5 370 46.5
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 4.3e-68 264.2 287 51.2
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 8.2e-67 260.0 407 42.8
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 4.6e-62 244.2 447 33.3
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 6.1e-62 243.8 214 79.4
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.0e-61 243.0 220 50.9
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 6.7e-61 240.4 712 26.7
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 2.2e-59 235.3 999 25.5
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 3.1e-50 204.9 160 68.1
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 3.2e-47 194.9 156 60.9
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 7.5e-44 183.7 664 25.9
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 1.1e-31 143.3 87 75.9
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 7.2e-31 140.6 258 38.0
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 1.0e-29 136.7 91 69.2
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 5.2e-29 134.4 257 38.5
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.3e-24 119.0 138 45.7
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 4.7e-22 111.3 135 47.4
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 1.0e-21 110.2 94 55.3
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.0e-20 105.9 106 53.8
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.6e-20 105.5 122 42.6
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.3e-19 103.2 119 42.0
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 1.7e-19 102.8 142 45.1
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 6.4e-19 100.9 111 47.7
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 3.2e-18 98.6 115 38.3
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 2.7e-17 95.5 163 55.8
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.3e-16 92.4 105 41.0
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 6.6e-16 90.9 124 37.9
MCO08G239 Micromonas commoda HOM05D002786 ORTHO05D003493 4.7e-14 84.7 715 21.3
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.4e-13 83.2 89 47.2
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 6.8e-13 80.9 87 41.4
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 6.8e-13 80.9 87 41.4
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 8.9e-13 80.5 124 35.5
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 9.2e-10 70.5 182 47.3
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 9.2e-10 70.5 63 52.4
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 1.6e-09 69.7 695 20.3
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 1.6e-09 69.7 373 22.5
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 3.5e-09 68.6 48 58.3
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 7.8e-09 67.4 388 21.6
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 1.3e-08 66.6 690 20.6
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.7e-08 66.2 65 46.2
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 6.6e-08 64.3 669 20.2
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 1.5e-07 63.2 664 18.8
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 1.9e-07 62.8 652 18.4


User provided reference genes

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