Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 1.7e-148 529.3 257 100.0
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 1.1e-136 490.0 257 93.4
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 1.7e-132 476.1 257 89.5
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 3.3e-128 461.8 257 85.2
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 9.7e-128 460.3 257 86.8
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 3.5e-125 451.8 278 81.7
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 2.9e-124 448.7 268 84.0
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 2.9e-124 448.7 278 81.3
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 2.7e-122 442.2 290 76.2
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 2.5e-115 419.1 230 88.3
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 5.0e-108 394.8 253 74.3
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 2.7e-106 389.0 256 73.0
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 1.5e-104 383.3 253 72.3
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 4.9e-103 378.3 253 70.4
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 8.3e-103 377.5 254 71.3
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 1.4e-102 376.7 244 74.6
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 7.0e-102 374.4 258 69.8
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 9.2e-102 374.0 258 69.4
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 9.2e-102 374.0 257 69.3
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 2.7e-101 372.5 257 69.3
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 5.9e-101 371.3 257 69.3
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 5.9e-101 371.3 250 71.2
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 7.7e-101 370.9 257 68.5
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 1.1e-99 367.1 257 69.3
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 1.5e-99 366.7 253 68.8
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 1.2e-98 363.6 260 70.8
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 1.2e-98 363.6 254 68.5
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 4.7e-98 361.7 260 67.3
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 2.3e-97 359.4 255 68.2
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 3.0e-97 359.0 253 68.4
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 6.8e-97 357.8 260 65.8
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 8.9e-97 357.5 260 65.4
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 1.2e-96 357.1 257 68.1
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 1.5e-96 356.7 250 67.6
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 2.6e-96 355.9 253 66.8
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 3.4e-96 355.5 258 67.4
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 4.4e-96 355.1 250 67.6
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 4.4e-96 355.1 259 69.1
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 5.7e-96 354.8 249 67.1
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 5.7e-96 354.8 246 70.7
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 1.7e-95 353.2 255 67.8
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 2.2e-95 352.8 255 66.7
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 2.9e-95 352.4 249 66.3
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 2.9e-95 352.4 253 68.4
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 6.4e-95 351.3 252 66.3
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 8.3e-95 350.9 254 66.1
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 1.1e-94 350.5 273 64.5
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 3.2e-94 349.0 254 65.0
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 9.2e-94 347.4 251 68.5
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 1.0e-92 344.0 258 64.3
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 2.3e-92 342.8 252 66.7
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 1.5e-91 340.1 273 67.0
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 2.5e-91 339.3 252 66.3
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 5.6e-91 338.2 247 68.0
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 9.5e-91 337.4 242 68.2
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 1.2e-90 337.0 250 65.6
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 1.2e-90 337.0 234 68.4
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.8e-89 333.2 245 64.5
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 1.8e-89 333.2 241 65.1
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 3.1e-89 332.4 257 64.6
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 6.8e-89 331.3 275 59.6
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 1.2e-88 330.5 240 66.2
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 9.8e-88 327.4 250 64.0
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 9.8e-88 327.4 238 66.8
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 1.6e-85 320.1 253 62.1
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 6.6e-84 314.7 212 74.1
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 8.1e-82 307.8 251 59.0
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 1.2e-80 303.9 247 61.9
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 7.5e-80 301.2 211 71.1
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 1.7e-79 300.1 222 65.8
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 3.9e-76 288.9 251 56.2
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 8.6e-76 287.7 163 85.3
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 2.8e-74 282.7 249 59.0
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 2.9e-71 272.7 205 65.4
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 9.2e-70 267.7 215 66.0
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 3.9e-68 262.3 250 54.0
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 3.3e-67 259.2 250 51.6
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 2.1e-66 256.5 194 63.9
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 4.0e-65 252.3 241 51.9
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 1.5e-64 250.4 272 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 3.3e-59 232.6 244 50.8
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 2.8e-58 229.6 361 39.6
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 2.4e-54 216.5 195 57.9
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 3.5e-53 212.6 254 48.0
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 9.0e-49 198.0 264 43.9
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 9.9e-48 194.5 115 82.6
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 8.4e-47 191.4 252 43.3
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 4.5e-24 115.9 148 48.0
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 1.4e-22 110.9 114 52.6
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 1.9e-22 110.5 66 72.7
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 7.2e-22 108.6 82 64.6
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 2.2e-18 97.1 66 71.2
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 8.8e-12 75.1 83 48.2
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 2.0e-11 73.9 232 29.3
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 7.4e-11 72.0 238 25.2
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 7.4e-11 72.0 231 26.4
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 1.7e-10 70.9 239 26.8
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 1.7e-10 70.9 231 27.3
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 1.7e-10 70.9 66 54.5
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 2.8e-10 70.1 260 26.9
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 2.8e-10 70.1 258 25.6
MD16G1000800 Malus domestica HOM05D001816 ORTHO05D002001 2.8e-10 70.1 233 29.2
THA.LOC104801893 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 2.8e-10 70.1 258 26.0
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 3.7e-10 69.7 258 25.6
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 4.8e-10 69.3 238 25.2
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 4.8e-10 69.3 236 25.4
Aa31LG10G3980 Aethionema arabicum HOM05D001816 ORTHO05D002001 6.3e-10 68.9 259 26.6
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 6.3e-10 68.9 258 25.6
CSS0038936 Camellia sinensis var. sinensis HOM05D001816 ORTHO05D002001 6.3e-10 68.9 231 26.8
MD13G1007000 Malus domestica HOM05D001816 ORTHO05D002001 8.2e-10 68.6 232 27.6
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 1.1e-09 68.2 231 27.3
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.4e-09 67.8 231 25.5
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 1.4e-09 67.8 233 29.2
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 1.4e-09 67.8 231 24.7
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 1.4e-09 67.8 242 26.4
A06p03300 Brassica napus HOM05D001816 ORTHO05D002001 1.8e-09 67.4 259 24.7
BraA06t23540Z Brassica rapa HOM05D001816 ORTHO05D002001 1.8e-09 67.4 259 24.7
Thhalv10011205m.g Eutrema salsugineum HOM05D001816 ORTHO05D002001 1.8e-09 67.4 231 26.4
C06p05260 Brassica napus HOM05D001816 ORTHO05D002001 2.4e-09 67.0 259 24.7
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 3.1e-09 66.6 259 24.7
BolC6t35636H Brassica oleracea HOM05D001816 ORTHO05D002001 3.1e-09 66.6 259 24.7
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 3.1e-09 66.6 259 24.7
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 3.1e-09 66.6 231 26.8
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 3.1e-09 66.6 258 25.6
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 4.1e-09 66.2 258 25.6
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 4.1e-09 66.2 250 24.4
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 5.3e-09 65.9 258 24.4
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 5.3e-09 65.9 258 24.8
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 5.3e-09 65.9 241 25.7
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 7.0e-09 65.5 108 38.9
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 7.0e-09 65.5 230 24.3
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 7.0e-09 65.5 258 24.4
Cfa015943 Carpinus fangiana HOM05D001816 ORTHO05D002001 9.1e-09 65.1 231 26.8
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.2e-08 64.7 231 26.8
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 1.2e-08 64.7 250 25.2
BolC6t35631H Brassica oleracea HOM05D001816 ORTHO05D002001 1.2e-08 64.7 260 25.4
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 2.0e-08 63.9 236 24.6
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 3.5e-08 63.2 231 26.0
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 4.5e-08 62.8 211 26.5
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 5.9e-08 62.4 239 25.1
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.3e-07 61.2 236 24.6
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 1.3e-07 61.2 236 24.6
Gohir.A03G164100 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.9e-07 60.1 236 25.0
TWI74G1422 Tripterygium wilfordii HOM05D001816 ORTHO05D002001 5.0e-07 59.3 259 24.3
Gorai.008G149700 Gossypium raimondii HOM05D001816 ORTHO05D002001 8.5e-07 58.5 262 22.5
Gohir.D12G138166 Gossypium hirsutum HOM05D001816 ORTHO05D002001 1.1e-06 58.2 235 23.0
MCO11G803 Micromonas commoda HOM05D001816 ORTHO05D002001 1.1e-06 58.2 211 26.1
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 1.9e-06 57.4 169 29.6
Atru.chr9.1432 Acer truncatum HOM05D001816 ORTHO05D002001 5.5e-06 55.8 108 32.4
RcHm_v2.0_Chr5g0008751 Rosa chinensis HOM05D007625 ORTHO05D343624 5.5e-06 55.8 35 68.6


User provided reference genes

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