Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g14570 Schrenkiella parvula HOM05D004680 ORTHO05D005939 6.9e-278 959.9 453 100.0
Thhalv10020703m.g Eutrema salsugineum HOM05D004680 ORTHO05D005939 1.8e-270 935.3 453 96.2
AL3G28890 Arabidopsis lyrata HOM05D004680 ORTHO05D005939 2.1e-266 921.8 453 94.3
AT3G16200 Arabidopsis thaliana HOM05D004680 ORTHO05D005939 3.5e-266 921.0 453 94.0
Carub.0003s1595 Capsella rubella HOM05D004680 ORTHO05D005939 8.7e-265 916.4 453 94.0
C05p50300 Brassica napus HOM05D004680 ORTHO05D005939 2.4e-262 908.3 455 93.4
CARHR091390 Cardamine hirsuta HOM05D004680 ORTHO05D005939 6.9e-262 906.7 453 93.4
A05p33300 Brassica napus HOM05D004680 ORTHO05D005939 9.0e-262 906.4 456 93.0
BraA05t22155Z Brassica rapa HOM05D004680 ORTHO05D005939 9.0e-262 906.4 456 92.8
BcaC09g48589 Brassica carinata HOM05D004680 ORTHO05D005939 2.6e-261 904.8 452 93.4
A01p37900 Brassica napus HOM05D004680 ORTHO05D005939 3.4e-261 904.4 453 93.4
BraA01t03850Z Brassica rapa HOM05D004680 ORTHO05D005939 1.3e-260 902.5 453 93.2
BolC1t04776H Brassica oleracea HOM05D004680 ORTHO05D005939 1.2e-258 896.0 453 92.7
C01p48080 Brassica napus HOM05D004680 ORTHO05D005939 1.6e-258 895.6 453 92.9
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 1.9e-256 888.6 450 92.2
THA.LOC104817975 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 1.7e-247 859.0 462 87.4
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 4.1e-246 854.4 442 88.0
THA.LOC104815523 Tarenaya hassleriana HOM05D004680 ORTHO05D005939 7.2e-235 817.0 444 85.8
Cpa.g.sc109.43 Carica papaya HOM05D004680 ORTHO05D005939 3.7e-223 778.1 437 81.7
Thecc.06G095100 Theobroma cacao HOM05D004680 ORTHO05D005939 2.8e-215 751.9 456 77.9
Duzib192G0285 Durio zibethinus HOM05D004680 ORTHO05D005939 6.3e-215 750.7 460 77.4
Manes.11G036700 Manihot esculenta HOM05D004680 ORTHO05D005939 7.0e-214 747.3 460 77.6
Duzib235G0372 Durio zibethinus HOM05D004680 ORTHO05D005939 2.0e-213 745.7 468 76.5
Gorai.011G073000 Gossypium raimondii HOM05D004680 ORTHO05D005939 2.7e-213 745.3 457 76.1
Gohir.D10G069100 Gossypium hirsutum HOM05D004680 ORTHO05D005939 5.9e-213 744.2 457 76.1
TWI75G1773 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 6.6e-212 740.7 451 78.3
Gohir.A10G067300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 3.3e-211 738.4 456 76.1
Gorai.009G136000 Gossypium raimondii HOM05D004680 ORTHO05D005939 3.3e-211 738.4 447 77.6
Gohir.A05G127800 Gossypium hirsutum HOM05D004680 ORTHO05D005939 7.3e-211 737.3 447 77.6
Sabra01G0153900 Salix brachista HOM05D004680 ORTHO05D005939 9.5e-211 736.9 445 78.0
Potri.001G186200 Populus trichocarpa HOM05D004680 ORTHO05D005939 5.7e-208 727.6 445 76.6
Potri.003G051200 Populus trichocarpa HOM05D004680 ORTHO05D005939 7.5e-208 727.2 450 75.6
CANSAT56G3143 Cannabis sativa HOM05D004680 ORTHO05D005939 3.5e-205 718.4 451 75.4
Sabra03G0027900 Salix brachista HOM05D004680 ORTHO05D005939 2.3e-204 715.7 437 76.7
TWI12G0154 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 3.9e-204 714.9 439 77.0
RcHm_v2.0_Chr2g0139361 Rosa chinensis HOM05D004680 ORTHO05D005939 6.6e-204 714.1 445 75.1
Medtr2g101480 Medicago truncatula HOM05D004680 ORTHO05D005939 1.9e-203 712.6 448 75.9
FAN09G3354 Fragaria x ananassa HOM05D004680 ORTHO05D005939 3.3e-203 711.8 443 75.4
Dinv30468 Davidia involucrata HOM05D004680 ORTHO05D005939 2.1e-202 709.1 437 76.0
Peaxi162Scf00015g00135 Petunia axillaris HOM05D004680 ORTHO05D005939 2.8e-202 708.8 435 75.9
FvH4_6g31940 Fragaria vesca HOM05D004680 ORTHO05D005939 8.0e-202 707.2 443 75.2
Prupe.3G064100 Prunus persica HOM05D004680 ORTHO05D005939 8.0e-202 707.2 449 73.7
ClCG07G013200 Citrullus lanatus HOM05D004680 ORTHO05D005939 1.8e-201 706.1 447 74.7
Hma1.2p1_1262F.1_g271230 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 2.3e-201 705.7 441 76.4
Sc12g0009530 Simmondsia chinensis HOM05D004680 ORTHO05D005939 4.0e-201 704.9 436 75.9
TAR383G0102 Trochodendron aralioides HOM05D004680 ORTHO05D005939 6.8e-201 704.1 436 75.0
AUR62031868 Chenopodium quinoa HOM05D004680 ORTHO05D005939 1.2e-200 703.4 439 74.7
Ca_01140_v3 Cicer arietinum L. HOM05D004680 ORTHO05D005939 1.5e-200 703.0 457 74.8
Cfa002107 Carpinus fangiana HOM05D004680 ORTHO05D005939 2.0e-200 702.6 441 75.5
MD09G1207900 Malus domestica HOM05D004680 ORTHO05D005939 4.4e-200 701.4 447 73.4
AUR62016515 Chenopodium quinoa HOM05D004680 ORTHO05D005939 5.8e-200 701.0 439 74.5
CsaV3_3G023810 Cucumis sativus L. HOM05D004680 ORTHO05D005939 5.8e-200 701.0 446 74.0
EL10Ac9g22049 Beta vulgaris HOM05D004680 ORTHO05D005939 7.5e-200 700.7 441 74.6
Eucgr.F03051 Eucalyptus grandis HOM05D004680 ORTHO05D005939 7.5e-200 700.7 449 74.8
Lalb_Chr24g0395991 Lupinus albus HOM05D004680 ORTHO05D005939 7.5e-200 700.7 453 72.4
Ciclev10025565m.g Citrus clementina HOM05D004680 ORTHO05D005939 1.3e-199 699.9 465 72.9
Phvul.005G169700 Phaseolus vulgaris HOM05D004680 ORTHO05D005939 2.2e-199 699.1 470 72.1
Lalb_Chr22g0351431 Lupinus albus HOM05D004680 ORTHO05D005939 2.9e-199 698.7 439 74.9
Glyma.15G017600 Glycine max HOM05D004680 ORTHO05D005939 6.4e-199 697.6 458 74.0
Glyma.13G356500 Glycine max HOM05D004680 ORTHO05D005939 2.4e-198 695.7 449 73.7
CiPaw.02G147900 Carya illinoinensis HOM05D004680 ORTHO05D005939 4.1e-198 694.9 441 75.5
CSS0039709 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 5.4e-198 694.5 444 74.1
Hund06644 Selenicereus undatus HOM05D004680 ORTHO05D005939 5.4e-198 694.5 432 73.8
Nitab4.5_0000351g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.2e-197 693.3 437 74.4
QL05p021321 Quercus lobata HOM05D004680 ORTHO05D005939 1.2e-197 693.3 399 79.7
MELO3C012983.2 Cucumis melo HOM05D004680 ORTHO05D005939 1.6e-197 693.0 447 73.6
Nitab4.5_0006985g0040 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.5e-197 691.8 444 73.4
TPR.G37217 Trifolium pratense HOM05D004680 ORTHO05D005939 3.5e-197 691.8 438 75.1
Lalb_Chr14g0373141 Lupinus albus HOM05D004680 ORTHO05D005939 1.0e-196 690.3 435 75.2
Nn3g18134 Nelumbo nucifera HOM05D004680 ORTHO05D005939 1.3e-196 689.9 436 73.2
Nitab4.5_0009963g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 1.7e-196 689.5 433 75.3
Ah.01g021760 Amaranthus hybridus HOM05D004680 ORTHO05D005939 2.3e-196 689.1 435 73.3
MD17G1189000 Malus domestica HOM05D004680 ORTHO05D005939 2.3e-196 689.1 445 72.6
SalBow2G2497 Salvia bowleyana HOM05D004680 ORTHO05D005939 3.0e-196 688.7 439 73.3
Migut.I00930 Erythranthe guttata HOM05D004680 ORTHO05D005939 3.9e-196 688.3 443 72.0
Cc04_g02880 Coffea canephora HOM05D004680 ORTHO05D005939 6.6e-196 687.6 443 73.6
Lj3g0026249 Lotus japonicus HOM05D004680 ORTHO05D005939 8.6e-196 687.2 448 73.4
MSTRG.22656 Avicennia marina HOM05D004680 ORTHO05D005939 3.3e-195 685.3 440 72.3
Sed0009248 Sechium edule HOM05D004680 ORTHO05D005939 5.6e-195 684.5 446 72.4
Rhsim08G0225100 Rhododendron simsii HOM05D004680 ORTHO05D005939 7.3e-195 684.1 441 73.9
Solyc03g120490.3 Solanum lycopersicum HOM05D004680 ORTHO05D005939 9.5e-195 683.7 435 72.9
Sopen03g039370 Solanum pennellii HOM05D004680 ORTHO05D005939 2.1e-194 682.6 435 72.6
PGR102G2014 Punica granatum HOM05D004680 ORTHO05D005939 2.8e-194 682.2 441 73.9
PSO782G2876 Papaver somniferum HOM05D004680 ORTHO05D005939 3.6e-194 681.8 405 75.8
CSS0028346 Camellia sinensis var. sinensis HOM05D004680 ORTHO05D005939 4.7e-194 681.4 432 74.3
PSO566G0328 Papaver somniferum HOM05D004680 ORTHO05D005939 4.7e-194 681.4 441 71.4
FAN14G5860 Fragaria x ananassa HOM05D004680 ORTHO05D005939 6.2e-194 681.0 459 71.2
PGSC0003DMG400002632 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.1e-193 680.2 435 72.4
Nn2g11656 Nelumbo nucifera HOM05D004680 ORTHO05D005939 2.3e-193 679.1 399 77.7
Sed0024237 Sechium edule HOM05D004680 ORTHO05D005939 2.3e-193 679.1 446 72.2
SGA_v2.0_scaffold69G23355 Striga asiatica HOM05D004680 ORTHO05D005939 2.3e-193 679.1 443 72.5
GSVIVG01017045001 Vitis vinifera HOM05D004680 ORTHO05D005939 2.3e-193 679.1 437 73.2
Aqoxy7G01528 Aquilegia oxysepala HOM05D004680 ORTHO05D005939 6.8e-193 677.6 438 72.8
arahy.Tifrunner.gnm1.ann1.0TRA3C Arachis hypogaea HOM05D004680 ORTHO05D005939 2.0e-192 676.0 364 82.7
arahy.Tifrunner.gnm1.ann1.I8Y04W Arachis hypogaea HOM05D004680 ORTHO05D005939 2.0e-192 676.0 364 83.0
HanXRQChr02g0032341 Helianthus annuus HOM05D004680 ORTHO05D005939 7.5e-192 674.1 440 72.5
vmacro18875 Vaccinium macrocarpon HOM05D004680 ORTHO05D005939 9.9e-192 673.7 443 73.1
VMungo1080G0622 Vigna mungo HOM05D004680 ORTHO05D005939 1.3e-191 673.3 476 68.9
Migut.D01009 Erythranthe guttata HOM05D004680 ORTHO05D005939 4.9e-191 671.4 441 71.4
SalBow7G2677 Salvia bowleyana HOM05D004680 ORTHO05D005939 1.7e-188 662.9 434 71.4
Manes.04G131400 Manihot esculenta HOM05D004680 ORTHO05D005939 5.1e-188 661.4 443 71.8
ECA247G0440 Erigeron canadensis HOM05D004680 ORTHO05D005939 4.7e-186 654.8 429 72.5
MBI04_g14933_MAGBIO Magnolia biondii HOM05D004680 ORTHO05D005939 8.1e-186 654.1 384 77.6
MSTRG.9470 Avicennia marina HOM05D004680 ORTHO05D005939 6.8e-185 651.0 448 70.3
Nitab4.5_0011578g0010 Nicotiana tabacum HOM05D004680 ORTHO05D005939 3.4e-184 648.7 434 71.7
Oeu050619.1 Olea europaea HOM05D004680 ORTHO05D005939 6.4e-183 644.4 514 62.3
Peaxi162Scf00207g01238 Petunia axillaris HOM05D004680 ORTHO05D005939 6.4e-183 644.4 435 72.6
Lsat_1_v5_gn_1_34800 Lactuca sativa HOM05D004680 ORTHO05D005939 2.4e-182 642.5 429 72.3
SGA_v2.0_scaffold4G02014 Striga asiatica HOM05D004680 ORTHO05D005939 3.2e-182 642.1 440 69.1
ATR0315G163 Amborella trichopoda HOM05D004680 ORTHO05D005939 3.5e-181 638.6 379 76.5
DCAR_023071 Daucus carota HOM05D004680 ORTHO05D005939 7.8e-181 637.5 443 68.8
CDE02G3046 Ceratophyllum demersum HOM05D004680 ORTHO05D005939 3.6e-178 628.6 433 68.6
unitig_899.g14773 Utricularia gibba HOM05D004680 ORTHO05D005939 1.4e-174 616.7 442 66.7
Actinidia32715 Actinidia chinensis HOM05D004680 ORTHO05D005939 7.8e-173 610.9 434 68.2
SGA_v2.0_scaffold5G02541 Striga asiatica HOM05D004680 ORTHO05D005939 1.9e-171 606.3 446 66.4
HPP92_021671 Vanilla planifolia HOM05D004680 ORTHO05D005939 3.6e-170 602.1 382 72.3
Atru.BG.177.p Acer truncatum HOM05D004680 ORTHO05D005939 1.8e-169 599.7 322 83.2
QL11p016400 Quercus lobata HOM05D004680 ORTHO05D005939 1.2e-165 587.0 322 81.4
Actinidia21693 Actinidia chinensis HOM05D004680 ORTHO05D005939 2.1e-165 586.3 347 77.5
Lsat_1_v5_gn_4_101400 Lactuca sativa HOM05D004680 ORTHO05D005939 4.8e-162 575.1 427 66.3
SEGI_20570 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 4.9e-159 565.1 379 67.3
Zm00001eb270670 Zea mays HOM05D004680 ORTHO05D005939 1.4e-158 563.5 410 66.1
Psat5g297320 Pisum sativum HOM05D004680 ORTHO05D005939 6.2e-154 548.1 289 84.8
CiPaw.01G234300 Carya illinoinensis HOM05D004680 ORTHO05D005939 1.8e-153 546.6 289 84.1
FAN05G4921 Fragaria x ananassa HOM05D004680 ORTHO05D005939 4.0e-153 545.4 289 82.7
Dinv38006 Davidia involucrata HOM05D004680 ORTHO05D005939 8.7e-148 527.7 343 73.5
SHI25904 Sapria himalayana HOM05D004680 ORTHO05D005939 1.8e-145 520.0 286 79.4
COL.COLO4_30464 Corchorus olitorius HOM05D004680 ORTHO05D005939 4.1e-145 518.8 270 87.0
SMO147G0400 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 1.2e-144 517.3 334 67.7
Hma1.2p1_1617F.1_g293780 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.8e-143 512.3 396 67.2
Gohir.D05G132300 Gossypium hirsutum HOM05D004680 ORTHO05D005939 1.9e-134 483.4 309 74.8
Haze_16340 Corylus avellana HOM05D004680 ORTHO05D005939 6.3e-130 468.4 305 74.1
Sc12g0009700 Simmondsia chinensis HOM05D004680 ORTHO05D005939 8.0e-125 451.4 298 73.2
Pp3c17_20690 Physcomitrium patens HOM05D004680 ORTHO05D005939 8.8e-124 448.0 389 52.4
AagrBONN_evm.TU.Sc2ySwM_369.193 Anthoceros agrestis HOM05D004680 ORTHO05D005939 7.2e-118 428.3 285 65.6
SMO358G0106 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 8.0e-109 398.3 384 48.7
SMO077G0005 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.1e-97 359.8 318 53.1
HPP92_008141 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.7e-95 354.0 273 64.8
SMO114G0076 Selaginella moellendorffii HOM05D004680 ORTHO05D005939 3.4e-91 339.7 332 48.5
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 2.0e-67 260.8 179 68.7
Haze_11589 Corylus avellana HOM05D004680 ORTHO05D005939 3.0e-63 246.9 137 81.8
TWI75G1313 Tripterygium wilfordii HOM05D004680 ORTHO05D005939 1.0e-55 221.9 109 87.2
HPP92_008142 Vanilla planifolia HOM05D004680 ORTHO05D005939 1.1e-49 201.8 124 71.8
PGSC0003DMG400007734 Solanum tuberosum HOM05D004680 ORTHO05D005939 1.9e-49 201.1 122 71.3
SEGI_33813 Sequoiadendron giganteum HOM05D004680 ORTHO05D005939 6.0e-48 196.1 138 62.3
Oeu040360.1 Olea europaea HOM05D004680 ORTHO05D011268 1.4e-44 184.9 127 66.1
Hma1.2p1_1576F.1_g291660 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 3.2e-33 147.1 85 78.8
Hma1.2p1_0033F.1_g020650 Hydrangea macrophylla HOM05D004680 ORTHO05D005939 9.3e-33 145.6 85 77.6
Zm00001eb389580 Zea mays HOM05D004680 ORTHO05D000383 2.2e-29 134.4 80 75.0
Atru.chr1.3422 Acer truncatum HOM05D004680 ORTHO05D005939 3.0e-23 114.0 101 54.5
Solyc07g014600.2 Solanum lycopersicum HOM05D004680 ORTHO05D005939 1.7e-13 81.6 52 67.3
BcaB01g02088 Brassica carinata HOM05D004680 ORTHO05D039099 1.9e-09 68.2 30 93.3
HanXRQChr10g0311001 Helianthus annuus HOM05D004680 ORTHO05D005939 5.2e-07 60.1 112 37.5
QL11p016407 Quercus lobata HOM05D004680 ORTHO05D039099 5.2e-07 60.1 133 37.6
SHI25903 Sapria himalayana HOM05D004680 ORTHO05D365905 1.5e-06 58.5 127 36.2


User provided reference genes

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