Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 1.3e-108 396.4 197 100.0
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 3.9e-100 368.2 197 90.9
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 5.0e-100 367.9 197 92.9
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 8.0e-98 360.5 198 89.9
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 8.0e-98 360.5 197 91.4
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 6.8e-97 357.5 198 89.4
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.6e-96 355.5 208 86.1
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 5.8e-96 354.4 206 86.9
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 4.9e-95 351.3 197 88.8
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 1.6e-93 346.3 197 86.8
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 3.9e-84 315.1 194 79.9
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 2.6e-80 302.4 170 89.4
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 4.9e-79 298.1 197 75.1
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 8.3e-79 297.4 196 74.0
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 1.4e-78 296.6 197 74.6
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 1.9e-78 296.2 191 75.4
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 4.1e-78 295.0 197 74.1
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 7.1e-78 294.3 197 73.6
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.6e-77 293.1 197 73.6
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 1.6e-77 293.1 197 73.1
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 2.7e-77 292.4 197 74.6
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 6.0e-77 291.2 197 74.1
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 1.0e-76 290.4 197 72.6
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 5.1e-76 288.1 196 71.9
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 5.1e-76 288.1 192 74.5
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 6.6e-76 287.7 192 73.4
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 6.6e-76 287.7 197 71.6
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 2.5e-75 285.8 197 73.1
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 4.3e-75 285.0 197 72.1
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 5.6e-75 284.6 193 72.5
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 7.3e-75 284.3 193 71.5
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.2e-74 283.5 177 81.9
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.2e-74 283.5 193 72.0
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.2e-74 283.5 193 72.5
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 1.2e-74 283.5 197 71.1
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.1e-73 280.4 193 71.5
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.4e-73 280.0 193 71.0
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 1.8e-73 279.6 190 73.7
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.8e-73 279.6 193 71.5
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.8e-73 279.6 191 72.3
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.4e-73 279.3 190 71.6
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 3.1e-73 278.9 197 69.0
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 5.2e-73 278.1 193 69.9
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 1.5e-72 276.6 198 71.2
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.0e-72 276.2 194 69.1
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 2.0e-72 276.2 197 68.5
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 3.4e-72 275.4 197 69.0
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 4.4e-72 275.0 197 69.5
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 5.8e-72 274.6 191 71.2
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 5.8e-72 274.6 193 70.5
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 5.8e-72 274.6 193 71.0
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 9.9e-72 273.9 196 68.9
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 3.8e-71 271.9 193 67.9
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 4.9e-71 271.6 185 73.5
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 6.4e-71 271.2 192 70.3
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 1.1e-70 270.4 196 70.4
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.9e-70 269.6 188 71.8
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 5.4e-70 268.1 191 69.6
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 5.4e-70 268.1 197 67.0
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 9.3e-70 267.3 192 66.7
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 9.3e-70 267.3 188 70.7
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 1.6e-69 266.5 188 69.7
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.6e-69 266.5 191 70.7
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 1.6e-69 266.5 191 69.1
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.6e-69 266.5 187 71.7
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 6.0e-69 264.6 191 70.2
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 6.0e-69 264.6 189 70.4
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 6.0e-69 264.6 191 68.6
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 6.0e-69 264.6 197 64.0
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 1.7e-68 263.1 191 68.6
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 2.3e-68 262.7 191 68.6
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 2.3e-68 262.7 171 75.4
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 3.9e-68 261.9 195 67.7
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 5.1e-68 261.5 171 76.6
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 5.1e-68 261.5 189 69.3
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 1.1e-67 260.4 188 68.6
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.9e-67 259.6 190 70.0
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 5.6e-67 258.1 171 74.9
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 1.3e-66 256.9 185 69.7
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 1.6e-66 256.5 168 73.8
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.6e-66 256.5 192 65.6
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 2.1e-66 256.1 171 73.7
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 2.8e-66 255.8 188 66.5
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 6.2e-66 254.6 192 67.7
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 8.1e-66 254.2 179 69.8
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 5.3e-65 251.5 170 74.7
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 1.5e-64 250.0 168 73.2
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 1.5e-64 250.0 179 69.8
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 2.0e-64 249.6 191 64.9
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.6e-64 249.2 168 73.8
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 2.6e-64 249.2 187 68.4
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 3.4e-64 248.8 172 72.1
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 4.4e-64 248.4 170 72.9
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 7.6e-64 247.7 188 65.4
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.7e-63 246.5 171 71.3
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 2.9e-63 245.7 177 69.5
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 4.9e-63 245.0 190 66.3
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 4.9e-63 245.0 197 62.4
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 1.4e-62 243.4 195 58.5
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 9.3e-62 240.7 193 60.1
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 9.3e-62 240.7 168 70.8
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 1.6e-61 240.0 193 59.6
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 2.7e-61 239.2 168 70.2
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 4.6e-61 238.4 171 67.8
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 3.0e-60 235.7 194 63.9
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 3.0e-60 235.7 174 67.2
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 8.7e-60 234.2 171 67.3
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 8.7e-60 234.2 197 60.9
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 5.6e-59 231.5 171 68.4
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 5.6e-59 231.5 192 57.8
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 2.8e-58 229.2 193 60.6
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 3.6e-58 228.8 165 65.5
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.8e-57 226.5 178 64.6
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 6.9e-57 224.6 190 59.5
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.6e-56 222.6 190 61.1
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.1e-54 217.2 171 62.6
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.1e-54 217.2 188 61.2
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 1.1e-54 217.2 193 59.1
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 7.1e-54 214.5 143 75.5
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 2.1e-53 213.0 189 54.0
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 3.9e-52 208.8 143 74.1
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 2.1e-50 203.0 134 72.4
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 2.4e-49 199.5 190 57.4
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 6.9e-49 198.0 193 54.4
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.9e-46 189.9 187 51.3
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.8e-44 183.3 119 77.3
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 2.8e-42 176.0 134 61.2
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 1.4e-41 173.7 119 72.3
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 7.6e-40 167.9 112 73.2
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 7.6e-40 167.9 188 51.1
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 3.8e-39 165.6 185 45.4
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.0e-36 157.5 171 51.5
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 1.1e-35 154.1 171 52.0
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 6.7e-20 101.7 136 46.3
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 5.5e-14 82.0 58 62.1
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 2.7e-13 79.7 52 67.3
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 3.9e-12 75.9 61 63.9
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 3.7e-10 69.3 192 29.7
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 1.1e-09 67.8 174 33.3
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 1.4e-09 67.4 182 31.3
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 1.8e-09 67.0 183 29.5
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.8e-09 67.0 174 33.3
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 2.4e-09 66.6 191 28.8
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 3.1e-09 66.2 174 31.0
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 4.1e-09 65.9 171 28.7
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 4.1e-09 65.9 179 33.5
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 5.3e-09 65.5 174 29.9
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 5.3e-09 65.5 173 32.4
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 1.2e-08 64.3 174 29.3
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 1.6e-08 63.9 174 31.0
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.6e-08 63.9 173 30.1
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 3.5e-08 62.8 180 30.6
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 1.3e-07 60.8 173 30.6
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 1.3e-07 60.8 174 31.6
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.3e-07 60.8 183 30.6
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 1.3e-07 60.8 56 51.8
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 3.8e-07 59.3 174 28.2
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 3.8e-07 59.3 184 27.7
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 3.2e-06 56.2 185 29.7
MCO11G203 Micromonas commoda HOM05D026393 ORTHO05D028829 3.2e-06 56.2 202 30.7
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 7.2e-06 55.1 169 26.6
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 9.4e-06 54.7 150 30.0


User provided reference genes

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