Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g14230 Schrenkiella parvula HOM05D007527 ORTHO05D009523 9.8e-66 253.4 140 100.0
BcaC09g48568 Brassica carinata HOM05D007527 ORTHO05D009523 3.0e-54 215.3 141 87.2
C01p48470 Brassica napus HOM05D007527 ORTHO05D009523 3.0e-54 215.3 141 87.2
BolC1t04807H Brassica oleracea HOM05D007527 ORTHO05D009523 3.0e-54 215.3 141 87.2
A01p38200 Brassica napus HOM05D007527 ORTHO05D009523 3.3e-53 211.8 141 85.8
BraA01t03878Z Brassica rapa HOM05D007527 ORTHO05D009523 3.3e-53 211.8 141 85.8
BcaB04g20897 Brassica carinata HOM05D007527 ORTHO05D009523 4.3e-53 211.5 141 85.1
Thhalv10021721m.g Eutrema salsugineum HOM05D007527 ORTHO05D009523 3.6e-52 208.4 139 84.9
AT3G15900 Arabidopsis thaliana HOM05D007527 ORTHO05D009523 1.2e-47 193.4 126 84.9
AL3G28550 Arabidopsis lyrata HOM05D007527 ORTHO05D009523 6.0e-47 191.0 141 76.6
Carub.0003s1564 Capsella rubella HOM05D007527 ORTHO05D009523 1.1e-43 180.3 122 80.3
Aa31LG8G3080 Aethionema arabicum HOM05D007527 ORTHO05D009523 6.4e-33 144.4 111 73.9
Gohir.D09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 4.0e-19 98.6 137 48.9
Atru.chr1.2902 Acer truncatum HOM05D007527 ORTHO05D009523 6.9e-19 97.8 144 45.1
Gorai.006G101400 Gossypium raimondii HOM05D007527 ORTHO05D009523 6.9e-19 97.8 137 48.9
Gohir.A09G085400 Gossypium hirsutum HOM05D007527 ORTHO05D009523 2.6e-18 95.9 137 48.2
COL.COLO4_11916 Corchorus olitorius HOM05D007527 ORTHO05D009523 1.3e-17 93.6 136 47.1
Manes.04G111800 Manihot esculenta HOM05D007527 ORTHO05D009523 4.9e-17 91.7 133 45.9
Manes.11G058100 Manihot esculenta HOM05D007527 ORTHO05D009523 1.1e-16 90.5 146 43.8
Thecc.06G029900 Theobroma cacao HOM05D007527 ORTHO05D009523 1.1e-16 90.5 133 45.9
CARHR091020 Cardamine hirsuta HOM05D007527 ORTHO05D009523 1.9e-16 89.7 80 66.2
MSTRG.5063 Avicennia marina HOM05D007527 ORTHO05D009523 7.1e-16 87.8 58 77.6
Migut.N01835 Erythranthe guttata HOM05D007527 ORTHO05D009523 7.1e-16 87.8 85 55.3
CAN.G407.74 Capsicum annuum HOM05D007527 ORTHO05D009523 1.2e-15 87.0 127 44.1
Ciclev10026543m.g Citrus clementina HOM05D007527 ORTHO05D009523 2.1e-15 86.3 135 44.4
vmacro16881 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 2.1e-15 86.3 133 43.6
Eucgr.B02436 Eucalyptus grandis HOM05D007527 ORTHO05D009523 2.7e-15 85.9 86 57.0
Potri.001G202000 Populus trichocarpa HOM05D007527 ORTHO05D009523 4.6e-15 85.1 58 72.4
CDE03G0516 Ceratophyllum demersum HOM05D007527 ORTHO05D009523 1.0e-14 84.0 64 57.8
Peaxi162Scf00332g00530 Petunia axillaris HOM05D007527 ORTHO05D009523 1.8e-14 83.2 130 43.8
CARHR091010 Cardamine hirsuta HOM05D007527 ORTHO05D009523 2.3e-14 82.8 46 89.1
PGR102G2450 Punica granatum HOM05D007527 ORTHO05D009523 2.3e-14 82.8 119 42.9
Duzib160G0519 Durio zibethinus HOM05D007527 ORTHO05D009523 3.9e-14 82.0 111 47.7
Dinv30616 Davidia involucrata HOM05D007527 ORTHO05D009523 5.1e-14 81.6 92 53.3
Cpa.g.sc67.40 Carica papaya HOM05D007527 ORTHO05D009523 6.7e-14 81.3 134 41.0
Rhsim12G0190600 Rhododendron simsii HOM05D007527 ORTHO05D009523 6.7e-14 81.3 133 40.6
Sabra03G0018000 Salix brachista HOM05D007527 ORTHO05D009523 1.1e-13 80.5 130 40.8
CSS0000513 Camellia sinensis var. sinensis HOM05D007527 ORTHO05D009523 1.5e-13 80.1 123 43.9
CANSAT56G2488 Cannabis sativa HOM05D007527 ORTHO05D009523 1.5e-13 80.1 57 68.4
TAR383G1076 Trochodendron aralioides HOM05D007527 ORTHO05D009523 1.5e-13 80.1 137 40.9
GSVIVG01017356001 Vitis vinifera HOM05D007527 ORTHO05D009523 1.5e-13 80.1 97 46.4
MBI15_g00959_MAGBIO Magnolia biondii HOM05D007527 ORTHO05D009523 1.9e-13 79.7 64 62.5
Nitab4.5_0003463g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 1.9e-13 79.7 127 44.1
ECA234G1859 Erigeron canadensis HOM05D007527 ORTHO05D009523 2.5e-13 79.3 63 60.3
TWI12G0113 Tripterygium wilfordii HOM05D007527 ORTHO05D009523 2.5e-13 79.3 82 50.0
Actinidia15754 Actinidia chinensis HOM05D007527 ORTHO05D009523 3.3e-13 79.0 134 39.6
CDE04G3040 Ceratophyllum demersum HOM05D002695 ORTHO05D002964 3.3e-13 79.0 81 49.4
Haze_16571 Corylus avellana HOM05D007527 ORTHO05D009523 3.3e-13 79.0 138 39.1
Nn8g39533 Nelumbo nucifera HOM05D007527 ORTHO05D009523 4.3e-13 78.6 62 59.7
SGA_v2.0_scaffold43G16304 Striga asiatica HOM05D007527 ORTHO05D009523 4.3e-13 78.6 98 48.0
Cc04_g04490 Coffea canephora HOM05D007527 ORTHO05D009523 7.4e-13 77.8 144 36.8
Hma1.2p1_0242F.1_g100670 Hydrangea macrophylla HOM05D007527 ORTHO05D009523 7.4e-13 77.8 58 69.0
Sopen03g035730 Solanum pennellii HOM05D007527 ORTHO05D009523 7.4e-13 77.8 91 50.5
CiPaw.01G249100 Carya illinoinensis HOM05D007527 ORTHO05D009523 9.6e-13 77.4 117 41.0
CsaV3_4G001960 Cucumis sativus L. HOM05D007527 ORTHO05D009523 9.6e-13 77.4 80 53.8
Nitab4.5_0008560g0010 Nicotiana tabacum HOM05D007527 ORTHO05D009523 9.6e-13 77.4 144 39.6
arahy.Tifrunner.gnm1.ann1.HBF5UW Arachis hypogaea HOM05D007527 ORTHO05D009523 1.3e-12 77.0 110 48.2
arahy.Tifrunner.gnm1.ann1.JM0XW1 Arachis hypogaea HOM05D007527 ORTHO05D009523 1.3e-12 77.0 110 48.2
Lsat_1_v5_gn_5_131420 Lactuca sativa HOM05D007527 ORTHO05D009523 1.3e-12 77.0 122 42.6
Ah.01g006590 Amaranthus hybridus HOM05D007527 ORTHO05D009523 1.6e-12 76.6 96 47.9
MELO3C017840.2 Cucumis melo HOM05D007527 ORTHO05D009523 1.6e-12 76.6 65 56.9
HanXRQChr10g0302821 Helianthus annuus HOM05D007527 ORTHO05D009523 1.6e-12 76.6 93 50.5
Sed0020992 Sechium edule HOM05D007527 ORTHO05D009523 1.6e-12 76.6 65 56.9
ClCG07G012200 Citrullus lanatus HOM05D007527 ORTHO05D009523 2.1e-12 76.3 80 52.5
Solyc03g116800.4 Solanum lycopersicum HOM05D007527 ORTHO05D009523 2.1e-12 76.3 58 63.8
Aqoxy7G01859 Aquilegia oxysepala HOM05D007527 ORTHO05D009523 2.8e-12 75.9 106 47.2
PGSC0003DMG400000643 Solanum tuberosum HOM05D007527 ORTHO05D009523 2.8e-12 75.9 110 41.8
Lj3g0017680 Lotus japonicus HOM05D007527 ORTHO05D009523 8.2e-12 74.3 70 57.1
vmacro07515 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.1e-11 73.9 133 41.4
PSO017G1806 Papaver somniferum HOM05D007527 ORTHO05D009523 1.4e-11 73.6 57 64.9
Sc07g0004280 Simmondsia chinensis HOM05D007527 ORTHO05D009523 1.8e-11 73.2 59 61.0
ATR0716G018 Amborella trichopoda HOM05D007527 ORTHO05D009523 2.4e-11 72.8 60 61.7
Cfa001953 Carpinus fangiana HOM05D007527 ORTHO05D009523 2.4e-11 72.8 149 35.6
MD17G1213600 Malus domestica HOM05D007527 ORTHO05D009523 2.4e-11 72.8 145 38.6
DCAR_021351 Daucus carota HOM05D002695 ORTHO05D002964 3.1e-11 72.4 110 44.5
Lalb_Chr24g0395451 Lupinus albus HOM05D007527 ORTHO05D009523 5.3e-11 71.6 58 63.8
Phvul.005G178900 Phaseolus vulgaris HOM05D007527 ORTHO05D009523 5.3e-11 71.6 89 50.6
Glyma.15G006800 Glycine max HOM05D007527 ORTHO05D009523 6.9e-11 71.2 58 63.8
Medtr2g104040 Medicago truncatula HOM05D007527 ORTHO05D009523 6.9e-11 71.2 84 51.2
Os02g0804400 Oryza sativa ssp. japonica HOM05D007527 ORTHO05D009523 9.0e-11 70.9 67 53.7
PSO170G5637 Papaver somniferum HOM05D007527 ORTHO05D009523 9.0e-11 70.9 115 43.5
VMungo1080G0810 Vigna mungo HOM05D007527 ORTHO05D009523 9.0e-11 70.9 89 50.6
Psat5g303480 Pisum sativum HOM05D007527 ORTHO05D009523 1.5e-10 70.1 88 51.1
Hund06552 Selenicereus undatus HOM05D007527 ORTHO05D009523 2.6e-10 69.3 128 39.1
Prupe.3G089500 Prunus persica HOM05D007527 ORTHO05D009523 4.5e-10 68.6 145 35.2
RcHm_v2.0_Chr2g0134671 Rosa chinensis HOM05D007527 ORTHO05D009523 5.9e-10 68.2 62 53.2
FvH4_6g29470 Fragaria vesca HOM05D007527 ORTHO05D009523 1.0e-09 67.4 90 43.3
FAN02G0939 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.0e-09 67.4 90 43.3
FAN14G2734 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.0e-09 67.4 92 42.4
vmacro16888 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 1.3e-09 67.0 84 46.4
RcHm_v2.0_Chr2g0134751 Rosa chinensis HOM05D007527 ORTHO05D009523 1.7e-09 66.6 98 41.8
FAN09G0177 Fragaria x ananassa HOM05D007527 ORTHO05D009523 3.8e-09 65.5 90 44.4
RcHm_v2.0_Chr2g0134971 Rosa chinensis HOM05D007527 ORTHO05D009523 8.5e-09 64.3 60 53.3
HPP92_017057 Vanilla planifolia HOM05D007527 ORTHO05D009523 8.5e-09 64.3 58 51.7
FAN05G4324 Fragaria x ananassa HOM05D007527 ORTHO05D009523 1.9e-08 63.2 129 40.3
Zm00001eb192090 Zea mays HOM05D007527 ORTHO05D009523 3.6e-07 58.9 94 40.4
vmacro16886 Vaccinium macrocarpon HOM05D007527 ORTHO05D009523 4.6e-07 58.5 45 64.4
Mapoly0006s0085 Marchantia polymorpha HOM05D007527 ORTHO05D009523 6.7e-06 54.7 114 39.5


User provided reference genes

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