Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g14100 Schrenkiella parvula HOM05D007722 ORTHO05D009730 6.7e-55 217.2 120 100.0
Thhalv10021781m.g Eutrema salsugineum HOM05D007722 ORTHO05D009730 1.3e-45 186.4 120 88.3
CARHR090870 Cardamine hirsuta HOM05D007722 ORTHO05D009730 6.7e-39 164.1 120 73.3
Carub.0003s1552 Capsella rubella HOM05D007722 ORTHO05D009730 9.7e-38 160.2 120 78.3
BcaB04g20904 Brassica carinata HOM05D007722 ORTHO05D009730 2.2e-37 159.1 125 84.0
BcaC09g48556 Brassica carinata HOM05D007722 ORTHO05D009730 4.5e-35 151.4 125 78.4
A01p38330 Brassica napus HOM05D007722 ORTHO05D009730 1.0e-34 150.2 125 80.0
BraA01t03884Z Brassica rapa HOM05D007722 ORTHO05D009730 1.7e-34 149.4 125 71.2
A05p33600 Brassica napus HOM05D000020 ORTHO05D000543 4.7e-32 141.4 120 74.2
C01p48660 Brassica napus HOM05D000771 ORTHO05D001963 8.8e-31 137.1 115 77.4
BcaC05g28932 Brassica carinata HOM05D000020 ORTHO05D000543 2.0e-30 136.0 120 72.5
C05p50590 Brassica napus HOM05D000020 ORTHO05D000543 2.0e-30 136.0 120 72.5
BolC1t04820H Brassica oleracea HOM05D000771 ORTHO05D001963 9.7e-30 133.7 112 76.8
BolC5t33806H Brassica oleracea HOM05D007722 ORTHO05D009730 9.7e-30 133.7 105 80.0
BraA05t22184Z Brassica rapa HOM05D000771 ORTHO05D001963 6.5e-26 120.9 104 76.9
Aa31LG8G2980 Aethionema arabicum HOM05D007722 ORTHO05D009730 1.9e-25 119.4 134 59.0
AL3G28440 Arabidopsis lyrata HOM05D007722 ORTHO05D009730 2.7e-24 115.5 120 65.8
AT3G15780 Arabidopsis thaliana HOM05D007722 ORTHO05D009730 6.7e-23 110.9 120 64.2
THA.LOC104810506 Tarenaya hassleriana HOM05D007722 ORTHO05D009730 3.3e-22 108.6 131 58.0
BcaB06g25688 Brassica carinata HOM05D000020 ORTHO05D001963 2.2e-18 95.9 116 57.8
AT1G52550 Arabidopsis thaliana HOM05D007722 ORTHO05D009730 2.9e-18 95.5 134 53.0
AL1G60800 Arabidopsis lyrata HOM05D007722 ORTHO05D009730 3.8e-18 95.1 133 55.6
THA.LOC104818136 Tarenaya hassleriana HOM05D007722 ORTHO05D009730 1.6e-16 89.7 134 53.0
CARHR042660 Cardamine hirsuta HOM05D007722 ORTHO05D009730 8.0e-16 87.4 133 51.9
Carub.0001s4151 Capsella rubella HOM05D007722 ORTHO05D009730 1.8e-15 86.3 135 51.1
COL.COLO4_12955 Corchorus olitorius HOM05D007722 ORTHO05D009730 8.3e-13 77.4 117 40.2
Thhalv10011859m.g Eutrema salsugineum HOM05D007722 ORTHO05D009730 1.4e-12 76.6 131 46.6
Duzib160G0092 Durio zibethinus HOM05D007722 ORTHO05D009730 2.7e-11 72.4 120 37.5
Potri.001G192500 Populus trichocarpa HOM05D007722 ORTHO05D009730 1.3e-10 70.1 50 62.0
Gohir.A10G073900 Gossypium hirsutum HOM05D007722 ORTHO05D009730 5.0e-10 68.2 112 41.1
Gohir.D10G075700 Gossypium hirsutum HOM05D007722 ORTHO05D009730 6.6e-10 67.8 112 41.1
MBI01_g35411_MAGBIO Magnolia biondii HOM05D007722 ORTHO05D009730 8.6e-10 67.4 111 42.3
Gorai.011G083600 Gossypium raimondii HOM05D007722 ORTHO05D009730 1.9e-09 66.2 47 61.7
TAR636G1020 Trochodendron aralioides HOM05D007722 ORTHO05D009730 2.5e-09 65.9 103 40.8
Psat7g256360 Pisum sativum HOM05D007722 ORTHO05D009730 5.5e-09 64.7 117 38.5
Sc10g0005890 Simmondsia chinensis HOM05D007722 ORTHO05D009730 5.5e-09 64.7 44 61.4
FvH4_6g29860 Fragaria vesca HOM05D007722 ORTHO05D009730 7.2e-09 64.3 122 40.2
FAN14G1239 Fragaria x ananassa HOM05D007722 ORTHO05D009730 7.2e-09 64.3 122 40.2
CSS0036618 Camellia sinensis var. sinensis HOM05D007722 ORTHO05D009730 9.5e-09 63.9 70 47.1
Prupe.3G085400 Prunus persica HOM05D007722 ORTHO05D009730 1.2e-08 63.5 125 36.8
Rhsim08G0213600 Rhododendron simsii HOM05D007722 ORTHO05D009730 1.2e-08 63.5 108 39.8
MD17G1210100 Malus domestica HOM05D007722 ORTHO05D009730 1.6e-08 63.2 122 36.9
Medtr4g010270 Medicago truncatula HOM05D007722 ORTHO05D009730 1.6e-08 63.2 53 50.9
Nn2g12058 Nelumbo nucifera HOM05D007722 ORTHO05D009730 2.1e-08 62.8 99 39.4
Sabra01G0149600 Salix brachista HOM05D007722 ORTHO05D009730 2.1e-08 62.8 41 63.4
Thecc.06G022100 Theobroma cacao HOM05D007722 ORTHO05D009730 2.8e-08 62.4 47 57.4
GSVIVG01017323001 Vitis vinifera HOM05D007722 ORTHO05D009730 2.8e-08 62.4 49 55.1
Sopen03g035570 Solanum pennellii HOM05D007722 ORTHO05D009730 3.6e-08 62.0 47 53.2
Nitab4.5_0007793g0010 Nicotiana tabacum HOM05D007722 ORTHO05D009730 4.7e-08 61.6 47 55.3
PGSC0003DMG401000617 Solanum tuberosum HOM05D007722 ORTHO05D009730 4.7e-08 61.6 47 53.2
ClCG09G002890 Citrullus lanatus HOM05D007722 ORTHO05D009730 6.1e-08 61.2 103 44.7
Solyc03g116660.3 Solanum lycopersicum HOM05D007722 ORTHO05D009730 6.1e-08 61.2 47 53.2
Haze_16545 Corylus avellana HOM05D007722 ORTHO05D009730 1.0e-07 60.5 49 57.1
QL05p029543 Quercus lobata HOM05D007722 ORTHO05D009730 1.0e-07 60.5 47 59.6
unitig_0.g1117 Utricularia gibba HOM05D007722 ORTHO05D009730 1.0e-07 60.5 47 59.6
FAN09G0448 Fragaria x ananassa HOM05D007722 ORTHO05D009730 1.4e-07 60.1 50 56.0
Cfa001975 Carpinus fangiana HOM05D007722 ORTHO05D009730 2.3e-07 59.3 47 57.4
ECA232G4504 Erigeron canadensis HOM05D000985 ORTHO05D000866 2.3e-07 59.3 46 56.5
Nitab4.5_0011590g0030 Nicotiana tabacum HOM05D007722 ORTHO05D009730 3.0e-07 58.9 46 52.2
Oeu045155.1 Olea europaea HOM05D007722 ORTHO05D009730 3.0e-07 58.9 47 53.2
Dinv30597 Davidia involucrata HOM05D007722 ORTHO05D009730 4.0e-07 58.5 47 55.3
Glyma.07G030600 Glycine max HOM05D007722 ORTHO05D009730 4.0e-07 58.5 54 48.1
VMungo0331G1522 Vigna mungo HOM05D007722 ORTHO05D009730 4.0e-07 58.5 122 40.2
CANSAT56G0372 Cannabis sativa HOM05D007722 ORTHO05D009730 5.2e-07 58.2 96 45.8
Gohir.A05G126200 Gossypium hirsutum HOM05D007722 ORTHO05D009730 6.8e-07 57.8 44 54.5
Gohir.D05G127100 Gossypium hirsutum HOM05D007722 ORTHO05D009730 6.8e-07 57.8 44 54.5
Gorai.009G131200 Gossypium raimondii HOM05D007722 ORTHO05D009730 6.8e-07 57.8 44 54.5
Lj3g0002989 Lotus japonicus HOM05D007722 ORTHO05D009730 6.8e-07 57.8 46 56.5
Phvul.010G155500 Phaseolus vulgaris HOM05D007722 ORTHO05D009730 6.8e-07 57.8 118 39.0
HanXRQChr16g0500401 Helianthus annuus HOM05D007722 ORTHO05D009730 8.9e-07 57.4 132 37.9
Lalb_Chr25g0279351 Lupinus albus HOM05D007722 ORTHO05D009730 8.9e-07 57.4 49 55.1
Glyma.08G212200 Glycine max HOM05D007722 ORTHO05D009730 1.2e-06 57.0 54 50.0
SGA_v2.0_scaffold37G14773 Striga asiatica HOM05D007722 ORTHO05D009730 1.2e-06 57.0 69 43.5
Migut.D01071 Erythranthe guttata HOM05D007722 ORTHO05D009730 1.5e-06 56.6 47 53.2
Peaxi162Scf00332g00773 Petunia axillaris HOM05D007722 ORTHO05D009730 1.5e-06 56.6 44 50.0
EL10Ac9g21908 Beta vulgaris HOM05D007722 ORTHO05D009730 2.6e-06 55.8 47 44.7
Manes.04G113466 Manihot esculenta HOM05D007722 ORTHO05D009730 2.6e-06 55.8 50 54.0
Manes.11G056000 Manihot esculenta HOM05D007722 ORTHO05D009730 7.5e-06 54.3 50 52.0
Os01g0392100 Oryza sativa ssp. japonica HOM05D007722 ORTHO05D009730 7.5e-06 54.3 42 52.4
Sed0026756 Sechium edule HOM05D007722 ORTHO05D009730 7.5e-06 54.3 49 53.1
Zm00001eb221290 Zea mays HOM05D007722 ORTHO05D009730 9.8e-06 53.9 42 54.8


User provided reference genes

Program Settings