Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.4e-159 566.2 290 100.0
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 6.6e-157 557.4 290 97.6
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 8.6e-157 557.0 288 98.6
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 5.6e-156 554.3 290 96.9
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 5.6e-156 554.3 290 96.9
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 5.6e-156 554.3 290 96.9
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 7.3e-156 553.9 288 97.9
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.1e-155 552.4 288 97.6
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 6.2e-155 550.8 288 97.2
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 6.2e-155 550.8 288 97.6
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-154 550.1 288 97.2
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 1.4e-154 549.7 290 96.6
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 2.3e-154 548.9 291 96.6
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 4.0e-154 548.1 290 96.2
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 2.2e-152 542.3 290 95.5
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 7.1e-151 537.3 290 94.8
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 1.1e-148 530.0 282 96.1
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 1.5e-148 529.6 282 96.1
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 1.6e-147 526.2 282 95.4
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 1.1e-143 513.5 292 89.4
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 7.8e-134 480.7 293 84.6
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 6.2e-131 471.1 292 82.2
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 9.3e-127 457.2 291 80.8
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.6e-126 456.4 291 80.1
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.6e-126 456.4 291 80.1
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 2.3e-125 452.6 291 79.0
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 3.9e-125 451.8 295 77.3
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.1e-124 450.3 293 77.8
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.5e-124 449.9 291 79.4
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 7.4e-124 447.6 291 78.7
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 9.6e-124 447.2 291 78.7
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 2.1e-123 446.0 291 78.4
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 3.6e-123 445.3 296 76.4
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 1.4e-122 443.4 294 77.9
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 1.8e-122 443.0 291 77.3
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.1e-122 442.2 293 75.8
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 3.1e-122 442.2 291 77.3
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 4.0e-122 441.8 292 78.1
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 5.3e-122 441.4 294 77.6
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 5.3e-122 441.4 291 77.0
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 9.0e-122 440.7 294 77.2
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 1.2e-121 440.3 292 77.7
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 1.5e-121 439.9 292 77.4
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 1.3e-120 436.8 292 76.0
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 1.7e-120 436.4 296 75.0
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 2.2e-120 436.0 292 76.0
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 2.9e-120 435.6 299 75.3
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 3.8e-120 435.3 294 77.2
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 4.9e-120 434.9 292 75.7
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 6.4e-120 434.5 293 75.8
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 8.4e-120 434.1 293 76.8
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 8.4e-120 434.1 294 76.5
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 8.4e-120 434.1 294 76.9
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 8.4e-120 434.1 291 76.6
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 1.9e-119 433.0 293 76.8
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 3.2e-119 432.2 291 76.3
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 5.5e-119 431.4 297 75.8
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 7.1e-119 431.0 290 75.2
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 9.3e-119 430.6 297 75.4
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 3.5e-118 428.7 299 74.6
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 6.0e-118 427.9 290 75.9
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.3e-117 426.8 290 75.9
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.8e-117 426.4 298 75.5
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.8e-117 426.4 290 75.9
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 2.3e-117 426.0 291 76.3
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 3.9e-117 425.2 290 75.5
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 1.5e-116 423.3 292 73.3
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.5e-116 422.5 296 74.7
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.3e-116 422.2 290 75.2
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 4.3e-116 421.8 290 73.4
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 5.6e-116 421.4 290 75.2
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 1.3e-115 420.2 293 74.1
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.8e-115 419.1 291 73.9
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.8e-115 419.1 291 73.9
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 2.8e-115 419.1 293 73.4
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 6.2e-115 417.9 292 74.0
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 1.4e-114 416.8 292 74.3
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 2.4e-114 416.0 292 73.6
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 3.1e-114 415.6 282 76.6
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 4.0e-114 415.2 293 75.4
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 5.3e-114 414.8 290 72.4
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 5.3e-114 414.8 292 73.6
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 6.9e-114 414.5 292 74.7
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 6.9e-114 414.5 290 73.4
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 6.9e-114 414.5 291 73.9
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 1.5e-113 413.3 294 72.4
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 1.7e-112 409.8 283 73.1
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 6.5e-112 407.9 291 73.5
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 2.5e-111 406.0 291 73.5
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 4.2e-111 405.2 288 72.6
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 7.1e-111 404.4 295 72.5
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 7.1e-111 404.4 292 72.9
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 9.3e-111 404.1 291 71.5
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 2.1e-110 402.9 294 70.7
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 2.7e-110 402.5 293 71.0
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 2.7e-110 402.5 289 72.0
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 3.5e-110 402.1 289 73.0
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 4.6e-110 401.7 285 73.3
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 6.0e-110 401.4 289 70.6
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 6.0e-110 401.4 289 70.6
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.0e-109 400.6 291 72.2
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.3e-109 400.2 293 70.0
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 1.3e-109 400.2 294 70.1
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 2.3e-109 399.4 289 70.2
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 3.9e-109 398.7 297 72.4
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 6.7e-109 397.9 289 71.6
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 1.6e-107 393.3 292 69.2
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 2.8e-107 392.5 292 70.9
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 3.7e-107 392.1 289 70.6
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 6.3e-107 391.3 295 71.2
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 2.4e-106 389.4 292 70.9
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 3.1e-106 389.0 292 69.5
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 5.3e-106 388.3 295 71.5
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 9.0e-106 387.5 285 70.5
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 1.2e-105 387.1 296 70.3
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.2e-105 387.1 292 69.9
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 1.5e-105 386.7 278 73.4
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 3.4e-105 385.6 291 71.8
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 7.6e-105 384.4 295 68.5
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 1.0e-104 384.0 293 69.6
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 1.7e-104 383.3 282 70.9
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 6.5e-104 381.3 296 68.9
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 1.4e-103 380.2 289 69.6
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 1.8e-101 373.2 286 69.9
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 1.8e-101 373.2 295 66.1
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 9.7e-100 367.5 288 65.3
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 1.3e-99 367.1 273 68.9
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 1.8e-98 363.2 291 63.9
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 4.5e-97 358.6 292 66.8
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 7.7e-97 357.8 304 63.2
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 2.2e-96 356.3 294 63.6
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 4.2e-95 352.1 260 69.2
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 4.6e-94 348.6 295 64.4
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 3.9e-93 345.5 295 62.7
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 5.1e-93 345.1 291 65.6
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 1.5e-92 343.6 301 61.1
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 5.7e-92 341.7 303 62.0
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 1.7e-91 340.1 295 63.1
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 2.2e-91 339.7 303 61.4
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 4.8e-91 338.6 293 63.8
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 1.8e-90 336.7 293 63.5
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 3.8e-88 328.9 295 60.3
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 9.4e-87 324.3 291 59.8
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 6.7e-85 318.2 247 68.0
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 2.6e-84 316.2 278 59.7
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 2.8e-83 312.8 214 78.0
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 3.3e-76 289.3 279 57.0
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 6.3e-75 285.0 278 55.0
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 1.8e-69 266.9 267 56.9
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 3.4e-68 262.7 194 73.2
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 5.7e-60 235.3 143 80.4
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 1.2e-57 227.6 282 45.7
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 7.8e-57 224.9 278 50.4
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 3.0e-48 196.4 166 65.7
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.1e-47 194.5 126 73.0
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 1.5e-47 194.1 147 66.7
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 4.1e-42 176.0 145 67.6
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 1.7e-27 127.5 112 61.6
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 2.9e-27 126.7 100 67.0
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 3.5e-25 119.8 112 59.8
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 9.6e-23 111.7 332 29.2
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 2.1e-22 110.5 99 62.6
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 1.1e-21 108.2 72 76.4
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 5.4e-18 95.9 73 63.0
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 2.9e-11 73.6 55 65.5
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 1.9e-10 70.9 87 56.3
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 7.4e-07 58.9 167 31.1
MD16G1097300 Malus domestica HOM05D005748 ORTHO05D007123 2.1e-06 57.4 163 28.2
TWI18G0424 Tripterygium wilfordii HOM05D005748 ORTHO05D007123 8.1e-06 55.5 166 31.3


User provided reference genes

Program Settings