Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g13770 Schrenkiella parvula HOM05D007708 ORTHO05D009506 6.1e-58 227.3 113 100.0
Thhalv10021811m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 1.4e-49 199.5 105 94.3
A05p33900 Brassica napus HOM05D007708 ORTHO05D009506 1.2e-48 196.4 104 93.3
BraA05t22212Z Brassica rapa HOM05D007708 ORTHO05D009506 1.2e-48 196.4 104 93.3
BcaC05g28966 Brassica carinata HOM05D007708 ORTHO05D009506 2.0e-48 195.7 104 93.3
C05p51610 Brassica napus HOM05D007708 ORTHO05D009506 2.0e-48 195.7 104 93.3
BolC5t33849H Brassica oleracea HOM05D007708 ORTHO05D009506 2.0e-48 195.7 104 93.3
AL3G28090 Arabidopsis lyrata HOM05D007708 ORTHO05D009506 6.3e-47 190.7 105 89.5
BcaB06g29586 Brassica carinata HOM05D007708 ORTHO05D009506 8.2e-47 190.3 101 92.1
AT3G15518 Arabidopsis thaliana HOM05D007708 ORTHO05D009506 1.4e-46 189.5 105 88.6
CARHR090570 Cardamine hirsuta HOM05D007708 ORTHO05D009506 3.1e-46 188.3 105 88.6
Carub.0003s1524 Capsella rubella HOM05D007708 ORTHO05D009506 2.7e-45 185.3 106 85.8
BcaC09g48516 Brassica carinata HOM05D007708 ORTHO05D009506 5.5e-43 177.6 105 86.7
BcaC09g48517 Brassica carinata HOM05D007708 ORTHO05D009506 5.5e-43 177.6 105 86.7
BcaB04g20921 Brassica carinata HOM05D007708 ORTHO05D009506 2.1e-42 175.6 102 86.3
BolC1t04856H Brassica oleracea HOM05D007708 ORTHO05D009506 4.7e-42 174.5 105 85.7
BcaC09g48515 Brassica carinata HOM05D007708 ORTHO05D009506 6.5e-36 154.1 105 76.2
Thhalv10012270m.g Eutrema salsugineum HOM05D007708 ORTHO05D009506 3.0e-33 145.2 104 72.1
THA.LOC104810490 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 4.0e-33 144.8 112 67.0
THA.LOC104818058 Tarenaya hassleriana HOM05D007708 ORTHO05D009506 6.8e-33 144.1 109 65.1
Aa31LG10G2210 Aethionema arabicum HOM05D007708 ORTHO05D009506 4.4e-32 141.4 107 68.2
Aa31LG8G2750 Aethionema arabicum HOM05D007708 ORTHO05D009506 9.8e-32 140.2 103 68.9
A06p01470 Brassica napus HOM05D007708 ORTHO05D009506 8.6e-28 127.1 104 65.4
BraA06t23368Z Brassica rapa HOM05D007708 ORTHO05D009506 8.6e-28 127.1 104 65.4
BcaC08g43472 Brassica carinata HOM05D007708 ORTHO05D009506 2.5e-27 125.6 104 64.4
C06p08550 Brassica napus HOM05D007708 ORTHO05D009506 2.5e-27 125.6 104 64.4
BolC6t35934H Brassica oleracea HOM05D007708 ORTHO05D009506 2.5e-27 125.6 104 64.4
BcaB07g33383 Brassica carinata HOM05D007708 ORTHO05D009506 4.3e-27 124.8 89 70.8
Sp1g39450 Schrenkiella parvula HOM05D000067 ORTHO05D000097 9.5e-27 123.6 96 66.7
Cfa020536 Carpinus fangiana HOM05D007708 ORTHO05D009506 1.6e-18 96.3 66 66.7
Haze_09495 Corylus avellana HOM05D007708 ORTHO05D009506 2.1e-18 95.9 116 45.7
Lalb_Chr07g0181711 Lupinus albus HOM05D007708 ORTHO05D009506 2.1e-18 95.9 71 66.2
QL08p019254 Quercus lobata HOM05D007708 ORTHO05D009506 2.1e-18 95.9 112 45.5
Glyma.12G221200 Glycine max HOM05D007708 ORTHO05D009506 6.2e-18 94.4 71 63.4
Manes.03G114400 Manihot esculenta HOM05D007708 ORTHO05D009506 6.2e-18 94.4 88 56.8
Potri.001G404500 Populus trichocarpa HOM05D007708 ORTHO05D009506 6.2e-18 94.4 87 56.3
TPR.G38977 Trifolium pratense HOM05D007708 ORTHO05D009506 6.2e-18 94.4 71 60.6
Ca_01817_v3 Cicer arietinum L. HOM05D007708 ORTHO05D009506 8.0e-18 94.0 71 62.0
Potri.011G123600 Populus trichocarpa HOM05D007708 ORTHO05D009506 1.1e-17 93.6 87 56.3
Lj3g0000986 Lotus japonicus HOM05D007708 ORTHO05D009506 2.3e-17 92.4 71 62.0
Medtr2g080030 Medicago truncatula HOM05D007708 ORTHO05D009506 8.9e-17 90.5 71 60.6
Phvul.005G084800 Phaseolus vulgaris HOM05D007708 ORTHO05D009506 1.5e-16 89.7 71 60.6
VMungo1080G0096 Vigna mungo HOM05D007708 ORTHO05D009506 1.5e-16 89.7 71 60.6
Duzib268G1443 Durio zibethinus HOM05D007708 ORTHO05D009506 2.0e-16 89.4 107 51.4
Gohir.A01G066900 Gossypium hirsutum HOM05D007708 ORTHO05D009506 4.4e-16 88.2 90 57.8
Psat5g246000 Pisum sativum HOM05D007708 ORTHO05D009506 4.4e-16 88.2 71 59.2
Gorai.002G073900 Gossypium raimondii HOM05D007708 ORTHO05D009506 5.8e-16 87.8 90 57.8
Gohir.D01G054100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 7.5e-16 87.4 91 57.1
Glyma.13G280400 Glycine max HOM05D007708 ORTHO05D009506 9.8e-16 87.0 71 60.6
CiPaw.11G174300 Carya illinoinensis HOM05D007708 ORTHO05D009506 1.3e-15 86.7 86 55.8
Gohir.A04G028100 Gossypium hirsutum HOM05D007708 ORTHO05D009506 3.7e-15 85.1 92 51.1
Ciclev10009880m.g Citrus clementina HOM05D007708 ORTHO05D009506 6.4e-15 84.3 69 53.6
Gohir.D05G360000 Gossypium hirsutum HOM05D007708 ORTHO05D009506 6.4e-15 84.3 90 51.1
Gorai.009G432700 Gossypium raimondii HOM05D007708 ORTHO05D009506 6.4e-15 84.3 90 51.1
Eucgr.F03340 Eucalyptus grandis HOM05D007708 ORTHO05D009506 8.3e-15 84.0 89 51.7
TWI38G1724 Tripterygium wilfordii HOM05D007708 ORTHO05D009506 1.9e-14 82.8 89 53.9
Thecc.07G075600 Theobroma cacao HOM05D007708 ORTHO05D009506 9.2e-14 80.5 64 62.5
RcHm_v2.0_Chr5g0034861 Rosa chinensis HOM05D007708 ORTHO05D009506 3.5e-13 78.6 75 54.7
Atru.chr2.2769 Acer truncatum HOM05D007708 ORTHO05D009506 7.8e-13 77.4 103 45.6
FvH4_3g20710 Fragaria vesca HOM05D007708 ORTHO05D009506 3.9e-12 75.1 88 50.0
FAN11G2360 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.9e-12 75.1 88 50.0
FAN16G0929 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.9e-12 75.1 88 50.0
FAN25G1391 Fragaria x ananassa HOM05D007708 ORTHO05D009506 3.9e-12 75.1 88 50.0
Prupe.4G187200 Prunus persica HOM05D007708 ORTHO05D009506 3.9e-12 75.1 89 52.8
FAN21G3926 Fragaria x ananassa HOM05D007708 ORTHO05D009506 8.6e-12 73.9 88 48.9
Nn1g06676 Nelumbo nucifera HOM05D007708 ORTHO05D009506 5.6e-11 71.2 83 50.6
MD03G1222500 Malus domestica HOM05D007708 ORTHO05D009506 2.8e-10 68.9 71 53.5
MD11G1239800 Malus domestica HOM05D007708 ORTHO05D009506 6.2e-10 67.8 95 44.2
Glyma.06G249202 Glycine max HOM05D007708 ORTHO05D009506 8.1e-10 67.4 77 51.9
ClCG11G018300 Citrullus lanatus HOM05D007708 ORTHO05D009506 6.8e-09 64.3 84 46.4
CsaV3_3G044520 Cucumis sativus L. HOM05D007708 ORTHO05D009506 1.2e-08 63.5 84 46.4
COL.COLO4_09450 Corchorus olitorius HOM05D007708 ORTHO05D009506 1.5e-08 63.2 47 61.7
MELO3C018234.2 Cucumis melo HOM05D007708 ORTHO05D009506 2.0e-08 62.8 81 46.9
Nitab4.5_0000662g0060 Nicotiana tabacum HOM05D007708 ORTHO05D009506 7.5e-08 60.8 82 37.8
Lsat_1_v5_gn_5_7381 Lactuca sativa HOM05D007708 ORTHO05D009506 2.9e-07 58.9 45 60.0
MBI02_g19253_MAGBIO Magnolia biondii HOM05D007708 ORTHO05D009506 2.9e-07 58.9 76 50.0
Rhsim06G0195000 Rhododendron simsii HOM05D007708 ORTHO05D009506 2.9e-07 58.9 57 54.4
PGSC0003DMG400040761 Solanum tuberosum HOM05D007708 ORTHO05D009506 2.9e-07 58.9 49 53.1
Aqoxy1G02627 Aquilegia oxysepala HOM05D007708 ORTHO05D009506 3.7e-07 58.5 53 54.7
Sed0019748 Sechium edule HOM05D007708 ORTHO05D009506 4.9e-07 58.2 35 77.1
Cc05_g12520 Coffea canephora HOM05D007708 ORTHO05D009506 6.4e-07 57.8 44 63.6
CSS0032536 Camellia sinensis var. sinensis HOM05D007708 ORTHO05D009506 8.3e-07 57.4 108 38.9
DCAR_013081 Daucus carota HOM05D007708 ORTHO05D009506 1.9e-06 56.2 48 56.2
Nitab4.5_0001610g0030 Nicotiana tabacum HOM05D007708 ORTHO05D009506 1.9e-06 56.2 45 51.1
Sed0014711 Sechium edule HOM05D007708 ORTHO05D009506 1.9e-06 56.2 35 74.3
TAR626G1828 Trochodendron aralioides HOM05D007708 ORTHO05D009506 2.4e-06 55.8 116 36.2


User provided reference genes

Program Settings