Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 2.2e-154 548.9 276 100.0
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.0e-127 460.3 277 84.1
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 3.8e-114 415.2 278 79.9
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 5.2e-103 378.3 278 73.4
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 9.8e-102 374.0 278 74.8
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 1.3e-101 373.6 278 71.6
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.3e-101 373.6 284 70.8
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.3e-98 363.6 287 68.3
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.7e-98 363.2 285 69.5
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 4.3e-97 358.6 280 70.4
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 2.1e-96 356.3 285 67.7
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 4.7e-96 355.1 287 67.9
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 7.5e-94 347.8 285 66.7
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 7.5e-94 347.8 285 66.7
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 3.7e-93 345.5 264 70.1
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.2e-92 342.4 270 68.1
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 4.6e-91 338.6 285 64.6
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 1.9e-89 333.2 277 66.4
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 4.9e-85 318.5 285 63.9
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.9e-84 316.6 290 59.0
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 6.0e-83 311.6 194 82.5
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 2.3e-82 309.7 268 62.3
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 6.6e-82 308.1 290 58.6
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.4e-79 300.4 220 70.9
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.8e-79 300.1 286 55.9
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 2.4e-79 299.7 289 57.1
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.0e-79 298.9 286 55.9
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.0e-79 298.9 286 55.9
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.5e-78 297.0 279 58.4
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 2.0e-78 296.6 290 56.9
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 3.4e-78 295.8 286 56.3
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.4e-78 295.8 286 56.3
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 1.7e-77 293.5 300 54.7
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 2.9e-77 292.7 290 55.9
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 2.9e-77 292.7 289 55.4
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 4.9e-77 292.0 294 54.1
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 4.9e-77 292.0 290 56.2
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 4.9e-77 292.0 294 57.1
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 8.4e-77 291.2 293 55.6
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.9e-76 290.0 292 54.8
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.9e-76 290.0 289 54.3
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 2.4e-76 289.7 282 54.3
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 2.4e-76 289.7 293 55.3
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 4.2e-76 288.9 292 55.1
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.4e-76 288.5 292 56.2
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 1.6e-75 287.0 292 54.5
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 2.1e-75 286.6 279 55.9
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 6.0e-75 285.0 292 53.1
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 7.8e-75 284.6 306 52.0
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.3e-74 283.9 289 53.3
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.3e-74 283.9 281 55.2
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.3e-74 283.1 295 54.9
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 3.9e-74 282.3 285 55.1
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 3.9e-74 282.3 277 56.3
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 8.7e-74 281.2 293 54.3
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 1.1e-73 280.8 293 52.9
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.5e-73 280.4 282 54.3
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 2.5e-73 279.6 270 55.9
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 3.3e-73 279.3 289 50.9
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 4.3e-73 278.9 290 53.1
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 5.6e-73 278.5 249 65.1
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 7.3e-73 278.1 289 50.5
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 1.3e-72 277.3 288 52.8
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 1.6e-72 276.9 291 51.9
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 1.6e-72 276.9 291 51.9
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.6e-72 276.9 291 52.6
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 2.1e-72 276.6 292 51.7
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 2.8e-72 276.2 293 51.9
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 2.8e-72 276.2 288 52.8
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 6.2e-72 275.0 289 52.2
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 6.2e-72 275.0 281 52.3
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 8.1e-72 274.6 294 51.7
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 8.1e-72 274.6 291 50.5
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 3.1e-71 272.7 280 54.3
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 6.9e-71 271.6 295 53.6
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 6.9e-71 271.6 291 50.5
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 1.5e-70 270.4 292 51.7
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 2.6e-70 269.6 293 50.5
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 3.4e-70 269.2 295 53.6
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 5.8e-70 268.5 297 52.2
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 5.8e-70 268.5 282 53.2
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 7.6e-70 268.1 293 50.9
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 7.6e-70 268.1 293 50.9
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 9.9e-70 267.7 292 51.7
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.3e-69 267.3 297 51.5
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 1.3e-69 267.3 294 52.0
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.7e-69 266.9 294 50.7
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 2.2e-69 266.5 300 50.7
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 2.2e-69 266.5 293 50.5
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 2.9e-69 266.2 281 54.4
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 9.3e-68 261.2 332 46.4
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 3.5e-67 259.2 331 47.4
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 1.3e-66 257.3 284 48.6
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 5.1e-66 255.4 201 64.2
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.3e-65 252.3 249 54.2
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 8.1e-64 248.1 289 49.5
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 8.1e-64 248.1 286 48.3
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 1.1e-63 247.7 188 68.1
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.6e-62 241.5 270 51.1
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.7e-61 240.4 276 46.0
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 3.8e-61 239.2 235 57.0
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 1.4e-60 237.3 267 50.2
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 1.8e-58 230.3 286 47.2
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 4.3e-57 225.7 234 51.3
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.3e-56 224.2 283 47.0
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 2.1e-56 223.4 293 46.8
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 1.1e-55 221.1 262 48.1
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 3.1e-55 219.5 217 55.3
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 6.9e-55 218.4 282 46.1
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.3e-50 204.1 290 45.2
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 3.0e-50 203.0 294 44.6
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 4.3e-49 199.1 216 52.8
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 2.2e-48 196.8 307 39.7
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 3.7e-48 196.1 219 48.9
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 1.1e-47 194.5 212 51.4
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 2.0e-46 190.3 269 43.1
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 3.2e-44 183.0 208 48.1
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 2.1e-43 180.3 308 37.7
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 6.1e-43 178.7 228 47.8
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 7.9e-43 178.3 181 56.9
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 3.9e-42 176.0 309 35.6
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 8.8e-42 174.9 280 39.6
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 4.3e-41 172.6 273 38.5
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.3e-40 171.0 305 37.4
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 2.0e-38 163.7 159 54.7
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 4.5e-38 162.5 196 48.0
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 5.1e-34 149.1 133 55.6
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 9.7e-33 144.8 170 51.2
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 5.3e-31 139.0 135 54.8
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.0e-29 134.8 167 43.7
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 1.1e-28 131.3 138 52.9
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 2.7e-27 126.7 127 55.9
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.8e-26 124.0 122 57.4
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.9e-26 122.9 106 60.4
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 2.0e-22 110.5 97 62.9
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 2.0e-22 110.5 245 32.2
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 1.8e-18 97.4 119 46.2
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 3.1e-15 86.7 347 25.6
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 3.8e-13 79.7 69 63.8
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 1.5e-12 77.8 157 34.4
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 5.5e-12 75.9 222 28.8
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 7.2e-12 75.5 60 70.0
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 7.2e-12 75.5 60 70.0
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.2e-11 74.7 62 61.3
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 6.1e-11 72.4 97 42.3
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 4.4e-09 66.2 59 52.5
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 1.3e-08 64.7 111 43.2
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 3.7e-08 63.2 46 63.0
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 8.3e-08 62.0 153 31.4
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 3.1e-07 60.1 219 27.4
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 7.0e-07 58.9 182 26.9
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 9.1e-07 58.5 143 29.4
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 2.7e-06 57.0 180 26.1
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 5.9e-06 55.8 129 30.2
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 7.7e-06 55.5 148 29.1
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 7.7e-06 55.5 109 31.2


User provided reference genes

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