Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g13510 Schrenkiella parvula HOM05D003240 ORTHO05D009426 3.9e-69 265.0 169 100.0
Thhalv10022293m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 1.8e-61 239.6 169 83.4
AL3G27700 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 2.9e-56 222.2 131 87.0
Thhalv10012399m.g Eutrema salsugineum HOM05D003240 ORTHO05D009426 1.2e-52 210.3 131 79.4
BcaB04g20937 Brassica carinata HOM05D000882 ORTHO05D009426 5.7e-52 208.0 120 85.0
CARHR043350 Cardamine hirsuta HOM05D003240 ORTHO05D009426 1.3e-51 206.8 132 78.8
BcaB07g33356 Brassica carinata HOM05D003240 ORTHO05D009426 5.3e-50 201.4 131 77.1
AT1G53130 Arabidopsis thaliana HOM05D003240 ORTHO05D009426 7.0e-50 201.1 132 76.5
Carub.0003s1496 Capsella rubella HOM05D003240 ORTHO05D009426 2.7e-49 199.1 132 78.0
Sp1g39680 Schrenkiella parvula HOM05D003240 ORTHO05D009426 2.7e-49 199.1 133 76.7
A06p01190 Brassica napus HOM05D003240 ORTHO05D009426 3.5e-49 198.7 131 76.3
AL1G61490 Arabidopsis lyrata HOM05D003240 ORTHO05D009426 4.5e-49 198.4 126 75.4
BraA06t23346Z Brassica rapa HOM05D003240 ORTHO05D009426 4.5e-49 198.4 131 75.6
Carub.0001s4229 Capsella rubella HOM05D003240 ORTHO05D009426 3.8e-48 195.3 133 73.7
BcaC08g43498 Brassica carinata HOM05D003240 ORTHO05D009426 2.5e-47 192.6 131 74.8
C06p08830 Brassica napus HOM05D003240 ORTHO05D009426 2.5e-47 192.6 131 74.8
BolC6t35961H Brassica oleracea HOM05D003240 ORTHO05D017503 2.5e-47 192.6 131 74.8
Aa31LG10G2000 Aethionema arabicum HOM05D003240 ORTHO05D009426 9.4e-47 190.7 132 74.2
BcaC09g48486 Brassica carinata HOM05D003240 ORTHO05D009426 1.7e-40 169.9 124 69.4
THA.LOC104818082 Tarenaya hassleriana HOM05D003240 ORTHO05D009426 1.2e-36 157.1 132 65.9
BcaNung07375 Brassica carinata HOM05D003240 ORTHO05D009426 2.6e-36 156.0 124 64.5
CiPaw.12G118800 Carya illinoinensis HOM05D003240 ORTHO05D009426 8.6e-24 114.4 123 48.8
PGR083G0779 Punica granatum HOM05D003240 ORTHO05D009426 8.0e-22 107.8 115 51.3
TWI38G1889 Tripterygium wilfordii HOM05D003240 ORTHO05D009426 5.2e-21 105.1 159 59.7
Thecc.07G091300 Theobroma cacao HOM05D003240 ORTHO05D009426 6.8e-21 104.8 126 46.8
CANSAT56G1752 Cannabis sativa HOM05D003240 ORTHO05D009426 8.9e-21 104.4 88 55.7
Nitab4.5_0001336g0090 Nicotiana tabacum HOM05D003240 ORTHO05D009426 8.9e-21 104.4 168 57.7
Sabra16G0261800 Salix brachista HOM05D003240 ORTHO05D009426 8.9e-21 104.4 118 47.5
Duzib213G1023 Durio zibethinus HOM05D003240 ORTHO05D009426 3.4e-20 102.4 154 58.4
Oeu019313.1 Olea europaea HOM05D003240 ORTHO05D009426 4.4e-20 102.1 121 44.6
Gohir.D05G352500 Gossypium hirsutum HOM05D003240 ORTHO05D009426 5.8e-20 101.7 160 57.5
Gorai.009G384600 Gossypium raimondii HOM05D003240 ORTHO05D009426 5.8e-20 101.7 160 57.5
Nitab4.5_0001241g0070 Nicotiana tabacum HOM05D003240 ORTHO05D009426 7.5e-20 101.3 168 54.8
Gohir.A04G032100 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.3e-19 100.5 160 57.5
Prupe.4G180300 Prunus persica HOM05D003240 ORTHO05D009426 1.3e-19 100.5 120 44.2
Potri.001G399200 Populus trichocarpa HOM05D003240 ORTHO05D009426 2.2e-19 99.8 122 45.9
CAN.G162.53 Capsicum annuum HOM05D003240 ORTHO05D009426 2.9e-19 99.4 161 57.1
Cpa.g.sc80.73 Carica papaya HOM05D003240 ORTHO05D009426 2.9e-19 99.4 88 54.5
Haze_09435 Corylus avellana HOM05D003240 ORTHO05D009426 4.9e-19 98.6 154 59.7
Potri.011G118600 Populus trichocarpa HOM05D003240 ORTHO05D009426 4.9e-19 98.6 122 41.8
Haze_09433 Corylus avellana HOM05D003240 ORTHO05D009426 1.1e-18 97.4 138 62.3
Eucgr.F01147 Eucalyptus grandis HOM05D003240 ORTHO05D009426 1.1e-18 97.4 120 47.5
FvH4_3g19820 Fragaria vesca HOM05D003240 ORTHO05D009426 1.1e-18 97.4 123 43.1
RcHm_v2.0_Chr5g0033251 Rosa chinensis HOM05D003240 ORTHO05D009426 1.1e-18 97.4 121 42.1
Ciclev10010456m.g Citrus clementina HOM05D003240 ORTHO05D009426 1.4e-18 97.1 119 43.7
FAN21G1097 Fragaria x ananassa HOM05D003240 ORTHO05D009426 1.4e-18 97.1 123 42.3
FAN25G3490 Fragaria x ananassa HOM05D003240 ORTHO05D009426 2.4e-18 96.3 123 42.3
Migut.M00801 Erythranthe guttata HOM05D003240 ORTHO05D009426 3.2e-18 95.9 163 57.1
MBI06_g23076_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 5.4e-18 95.1 88 52.3
Hma1.2p1_0458F.1_g157060 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 7.0e-18 94.7 122 43.4
Phvul.005G072700 Phaseolus vulgaris HOM05D003240 ORTHO05D009426 1.2e-17 94.0 124 41.1
SGA_v2.0_scaffold73G24260 Striga asiatica HOM05D003240 ORTHO05D009426 1.2e-17 94.0 110 71.8
Atru.chr2.2486 Acer truncatum HOM05D003240 ORTHO05D009426 1.6e-17 93.6 127 41.7
FAN16G0971 Fragaria x ananassa HOM05D003240 ORTHO05D009426 2.1e-17 93.2 122 42.6
Nn1g06519 Nelumbo nucifera HOM05D003240 ORTHO05D009426 2.7e-17 92.8 122 41.0
Sopen07g031280 Solanum pennellii HOM05D003240 ORTHO05D009426 2.7e-17 92.8 163 55.8
VMungo1080G0324 Vigna mungo HOM05D003240 ORTHO05D009426 2.7e-17 92.8 127 39.4
PGSC0003DMG400012465 Solanum tuberosum HOM05D003240 ORTHO05D009426 3.5e-17 92.4 157 59.2
MD03G1228400 Malus domestica HOM05D003240 ORTHO05D009426 4.6e-17 92.0 160 56.2
Lj3g0021284 Lotus japonicus HOM05D003240 ORTHO05D009426 6.0e-17 91.7 129 43.4
Gohir.A04G031760 Gossypium hirsutum HOM05D003240 ORTHO05D009426 7.8e-17 91.3 122 45.1
Gohir.A04G031920 Gossypium hirsutum HOM05D003240 ORTHO05D009426 7.8e-17 91.3 122 45.1
Gorai.009G384700 Gossypium raimondii HOM05D003240 ORTHO05D009426 7.8e-17 91.3 122 45.1
Gorai.009G384900 Gossypium raimondii HOM05D003240 ORTHO05D009426 7.8e-17 91.3 122 45.1
Gohir.D05G352600 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.0e-16 90.9 122 45.1
Gohir.D05G352700 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.3e-16 90.5 122 41.8
Gorai.009G385100 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.3e-16 90.5 122 45.1
Hma1.2p1_0458F.1_g157090 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 1.3e-16 90.5 90 53.3
Gorai.009G385000 Gossypium raimondii HOM05D003240 ORTHO05D009426 1.7e-16 90.1 86 51.2
Hma1.2p1_0458F.1_g157080 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 1.7e-16 90.1 119 45.4
DCAR_013111 Daucus carota HOM05D003240 ORTHO05D009426 3.0e-16 89.4 84 52.4
DCAR_017136 Daucus carota HOM05D003240 ORTHO05D009426 3.0e-16 89.4 125 41.6
Glyma.12G225100 Glycine max HOM05D003240 ORTHO05D009426 3.0e-16 89.4 125 40.0
COL.COLO4_27180 Corchorus olitorius HOM05D003240 ORTHO05D009426 5.1e-16 88.6 160 52.5
Manes.15G087500 Manihot esculenta HOM05D003240 ORTHO05D009426 5.1e-16 88.6 120 43.3
Sabra11G0103500 Salix brachista HOM05D003240 ORTHO05D009426 8.6e-16 87.8 122 38.5
Gohir.A04G032000 Gossypium hirsutum HOM05D003240 ORTHO05D009426 1.1e-15 87.4 121 43.0
Cfa020576 Carpinus fangiana HOM05D003240 ORTHO05D009426 5.6e-15 85.1 116 43.1
Aqoxy1G02389 Aquilegia oxysepala HOM05D003240 ORTHO05D009426 7.3e-15 84.7 122 39.3
Cc05_g11970 Coffea canephora HOM05D003240 ORTHO05D009426 7.3e-15 84.7 159 57.2
Dinv14922 Davidia involucrata HOM05D003240 ORTHO05D009426 7.3e-15 84.7 122 36.1
Prupe.4G180400 Prunus persica HOM05D003240 ORTHO05D009426 7.3e-15 84.7 121 41.3
TAR627G0347 Trochodendron aralioides HOM05D003240 ORTHO05D009426 7.3e-15 84.7 81 48.1
Medtr2g085370 Medicago truncatula HOM05D003240 ORTHO05D009426 1.6e-14 83.6 125 38.4
CSS0038111 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 2.8e-14 82.8 126 37.3
Nn4g25258 Nelumbo nucifera HOM05D003240 ORTHO05D009426 2.8e-14 82.8 120 38.3
MBI07_g30192_MAGBIO Magnolia biondii HOM05D003240 ORTHO05D009426 6.2e-14 81.6 127 37.0
CSS0044584 Camellia sinensis var. sinensis HOM05D003240 ORTHO05D009426 8.1e-14 81.3 126 37.3
Hma1.2p1_0898F.1_g234470 Hydrangea macrophylla HOM05D003240 ORTHO05D009426 8.1e-14 81.3 113 38.9
Lj3g0010365 Lotus japonicus HOM05D003240 ORTHO05D009426 3.1e-13 79.3 128 38.3
Medtr2g085360 Medicago truncatula HOM05D003240 ORTHO05D009426 3.1e-13 79.3 90 44.4
Cfa020578 Carpinus fangiana HOM05D003240 ORTHO05D009426 1.2e-12 77.4 113 43.4
TPR.G38961 Trifolium pratense HOM05D003240 ORTHO05D009426 1.5e-12 77.0 77 51.9
ATR0737G149 Amborella trichopoda HOM05D003240 ORTHO05D009426 4.4e-12 75.5 56 55.4
TPR.G39028 Trifolium pratense HOM05D003240 ORTHO05D009426 4.4e-12 75.5 89 43.8
unitig_37.g12571 Utricularia gibba HOM05D003240 ORTHO05D009426 9.9e-12 74.3 63 47.6
PSO675G7736 Papaver somniferum HOM05D003240 ORTHO05D009426 3.7e-11 72.4 58 50.0
Glyma.13G276200 Glycine max HOM05D003240 ORTHO05D009426 4.9e-11 72.0 129 35.7
PSO541G3864 Papaver somniferum HOM05D003240 ORTHO05D009426 1.1e-10 70.9 58 48.3
Lalb_Chr03g0042631 Lupinus albus HOM05D003240 ORTHO05D009426 5.4e-10 68.6 119 37.0
Nn1g04123 Nelumbo nucifera HOM05D003240 ORTHO05D009426 3.5e-09 65.9 124 37.1
Rhsim06G0199500 Rhododendron simsii HOM05D003240 ORTHO05D009426 8.6e-08 61.2 58 44.8


User provided reference genes

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