Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g13400 Schrenkiella parvula HOM05D006014 ORTHO05D007608 1.5e-99 366.3 207 100.0
A05p34280 Brassica napus HOM05D006014 ORTHO05D007608 5.7e-86 321.2 208 91.3
BraA05t22249Z Brassica rapa HOM05D006014 ORTHO05D007608 7.4e-86 320.9 207 91.3
C05p52040 Brassica napus HOM05D006014 ORTHO05D007608 9.7e-86 320.5 208 89.9
BraA03t13069Z Brassica rapa HOM05D006014 ORTHO05D007608 2.4e-84 315.8 210 89.0
BcaB06g29543 Brassica carinata HOM05D006014 ORTHO05D007608 5.3e-84 314.7 208 90.4
AT3G15190 Arabidopsis thaliana HOM05D006014 ORTHO05D007608 1.3e-82 310.1 208 87.0
A03p39200 Brassica napus HOM05D006014 ORTHO05D007608 1.7e-82 309.7 209 88.0
Carub.0003s1484 Capsella rubella HOM05D006014 ORTHO05D007608 1.7e-82 309.7 208 87.0
Thhalv10021521m.g Eutrema salsugineum HOM05D006014 ORTHO05D007608 6.5e-82 307.8 210 87.1
CARHR090180 Cardamine hirsuta HOM05D006014 ORTHO05D007608 1.1e-81 307.0 207 87.9
A01p38830 Brassica napus HOM05D006014 ORTHO05D007608 1.9e-81 306.2 208 87.5
BraA01t03929Z Brassica rapa HOM05D006014 ORTHO05D007608 1.9e-81 306.2 208 87.5
BcaB04g20944 Brassica carinata HOM05D006014 ORTHO05D007608 2.1e-80 302.8 209 85.6
BolC1t04895H Brassica oleracea HOM05D006014 ORTHO05D007608 2.7e-80 302.4 208 87.5
AL3G27580 Arabidopsis lyrata HOM05D006014 ORTHO05D007608 3.6e-80 302.0 209 86.6
C01p49380 Brassica napus HOM05D006014 ORTHO05D007608 4.7e-80 301.6 208 88.0
Aa31LG8G2390 Aethionema arabicum HOM05D006014 ORTHO05D007608 4.5e-67 258.5 201 76.6
THA.LOC104815561 Tarenaya hassleriana HOM05D006014 ORTHO05D007608 5.9e-67 258.1 199 75.4
C03p47570 Brassica napus HOM05D006014 ORTHO05D007608 2.3e-55 219.5 146 88.4
BolC3t17032H Brassica oleracea HOM05D006014 ORTHO05D007608 6.8e-55 218.0 135 92.6
BcaC01g03887 Brassica carinata HOM05D006014 ORTHO05D007608 1.5e-54 216.9 135 91.9
BcaC09g48477 Brassica carinata HOM05D006014 ORTHO05D007608 2.0e-54 216.5 151 88.1
TAR626G1430 Trochodendron aralioides HOM05D006014 ORTHO05D007608 2.5e-49 199.5 188 63.8
MD11G1253300 Malus domestica HOM05D006014 ORTHO05D007608 3.3e-49 199.1 201 62.2
Ciclev10009636m.g Citrus clementina HOM05D006014 ORTHO05D007608 1.2e-48 197.2 195 63.6
Thecc.07G096300 Theobroma cacao HOM05D006014 ORTHO05D007608 2.1e-48 196.4 204 62.7
CSS0037767 Camellia sinensis var. sinensis HOM05D006014 ORTHO05D007608 1.0e-47 194.1 200 62.5
Hma1.2p1_1411F.1_g281760 Hydrangea macrophylla HOM05D006014 ORTHO05D007608 1.0e-47 194.1 202 62.4
Duzib170G0605 Durio zibethinus HOM05D006014 ORTHO05D007608 3.0e-47 192.6 203 62.6
Nitab4.5_0013317g0010 Nicotiana tabacum HOM05D006014 ORTHO05D007608 8.9e-47 191.0 191 64.4
Nitab4.5_0003033g0060 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.2e-46 190.7 196 61.2
FAN21G0470 Fragaria x ananassa HOM05D006014 ORTHO05D007608 2.6e-46 189.5 202 62.9
QL08p024005 Quercus lobata HOM05D006014 ORTHO05D007608 2.6e-46 189.5 192 63.0
MD03G1232600 Malus domestica HOM05D006014 ORTHO05D007608 3.4e-46 189.1 200 61.5
MELO3C025609.2 Cucumis melo HOM05D006014 ORTHO05D007608 4.4e-46 188.7 191 60.7
FvH4_3g19430 Fragaria vesca HOM05D006014 ORTHO05D007608 4.4e-46 188.7 202 62.9
FAN11G2300 Fragaria x ananassa HOM05D006014 ORTHO05D007608 4.4e-46 188.7 202 62.9
GSVIVG01014290001 Vitis vinifera HOM05D006014 ORTHO05D007608 4.4e-46 188.7 187 61.0
Peaxi162Scf00069g01737 Petunia axillaris HOM05D006014 ORTHO05D007608 9.8e-46 187.6 200 61.0
PGR083G0398 Punica granatum HOM05D006014 ORTHO05D007608 1.7e-45 186.8 195 62.1
CsaV3_4G033460 Cucumis sativus L. HOM05D006014 ORTHO05D007608 2.2e-45 186.4 191 60.2
Prupe.4G176000 Prunus persica HOM05D006014 ORTHO05D007608 2.2e-45 186.4 197 59.4
Solyc07g062870.3 Solanum lycopersicum HOM05D006014 ORTHO05D007608 2.8e-45 186.0 192 62.0
Sopen07g031070 Solanum pennellii HOM05D006014 ORTHO05D007608 2.8e-45 186.0 192 62.0
Manes.15G089600 Manihot esculenta HOM05D006014 ORTHO05D007608 3.7e-45 185.7 194 60.8
ClCG11G017820 Citrullus lanatus HOM05D006014 ORTHO05D007608 4.9e-45 185.3 187 61.5
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 4.9e-45 185.3 147 72.1
Dinv14938 Davidia involucrata HOM05D006014 ORTHO05D007608 4.9e-45 185.3 194 59.8
RcHm_v2.0_Chr5g0032711 Rosa chinensis HOM05D006014 ORTHO05D007608 4.9e-45 185.3 198 62.1
COL.COLO4_03477 Corchorus olitorius HOM05D006014 ORTHO05D007608 6.3e-45 184.9 204 61.3
FAN25G0078 Fragaria x ananassa HOM05D006014 ORTHO05D007608 6.3e-45 184.9 202 61.9
Nn1g04203 Nelumbo nucifera HOM05D006014 ORTHO05D007608 1.4e-44 183.7 196 58.2
Eucgr.F01167 Eucalyptus grandis HOM05D006014 ORTHO05D007608 2.4e-44 183.0 188 63.8
PGSC0003DMG400012405 Solanum tuberosum HOM05D006014 ORTHO05D007608 4.1e-44 182.2 192 60.9
Cc05_g11740 Coffea canephora HOM05D006014 ORTHO05D007608 7.0e-44 181.4 194 58.8
Migut.H01957 Erythranthe guttata HOM05D006014 ORTHO05D007608 9.2e-44 181.0 200 58.0
Gorai.009G375600 Gossypium raimondii HOM05D006014 ORTHO05D007608 1.2e-43 180.6 205 59.0
Gohir.D05G347800 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.6e-43 180.3 205 59.0
CDE10G1292 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 2.0e-43 179.9 150 67.3
PSO675G1148 Papaver somniferum HOM05D006014 ORTHO05D007608 3.5e-43 179.1 193 59.1
TAR624G0768 Trochodendron aralioides HOM05D006014 ORTHO05D007608 3.5e-43 179.1 141 73.0
Gohir.A04G035600 Gossypium hirsutum HOM05D006014 ORTHO05D007608 4.5e-43 178.7 205 59.5
Sed0004006 Sechium edule HOM05D006014 ORTHO05D007608 1.0e-42 177.6 178 62.9
PSO541G1420 Papaver somniferum HOM05D006014 ORTHO05D007608 1.3e-42 177.2 193 58.5
Aqoxy1G02326 Aquilegia oxysepala HOM05D006014 ORTHO05D007608 1.7e-42 176.8 195 57.9
CiPaw.11G167800 Carya illinoinensis HOM05D006014 ORTHO05D007608 1.7e-42 176.8 181 61.9
DCAR_019570 Daucus carota HOM05D006014 ORTHO05D007608 2.3e-42 176.4 203 58.6
CANSAT35G1465 Cannabis sativa HOM05D006014 ORTHO05D007608 3.8e-42 175.6 179 63.1
Sabra16G0259700 Salix brachista HOM05D006014 ORTHO05D007608 6.6e-42 174.9 196 59.2
Potri.001G396600 Populus trichocarpa HOM05D006014 ORTHO05D007608 2.5e-41 172.9 196 58.7
Cfa020606 Carpinus fangiana HOM05D006014 ORTHO05D007608 3.3e-41 172.6 125 74.4
TPR.G28172 Trifolium pratense HOM05D006014 ORTHO05D007608 4.3e-41 172.2 173 61.3
TWI38G2086 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 4.3e-41 172.2 175 60.6
Lj3g0022855 Lotus japonicus HOM05D006014 ORTHO05D007608 7.3e-41 171.4 184 58.7
CDE10G0058 Ceratophyllum demersum HOM05D006014 ORTHO05D007608 9.5e-41 171.0 160 63.8
Ca_23028_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.6e-40 170.2 185 61.1
Ca_23030_v3 Cicer arietinum L. HOM05D006014 ORTHO05D007608 1.6e-40 170.2 185 61.1
Glyma.12G162300 Glycine max HOM05D006014 ORTHO05D007608 2.8e-40 169.5 193 59.1
Glyma.06G236200 Glycine max HOM05D006014 ORTHO05D007608 8.0e-40 167.9 193 59.6
Lsat_1_v5_gn_5_128220 Lactuca sativa HOM05D006014 ORTHO05D007608 1.0e-39 167.5 165 65.5
Nitab4.5_0002330g0100 Nicotiana tabacum HOM05D006014 ORTHO05D007608 1.0e-39 167.5 208 56.2
VMungo1127G0848 Vigna mungo HOM05D006014 ORTHO05D007608 1.4e-39 167.2 193 57.0
Actinidia35240 Actinidia chinensis HOM05D006014 ORTHO05D007608 1.8e-39 166.8 115 78.3
Medtr8g061350 Medicago truncatula HOM05D006014 ORTHO05D007608 4.0e-39 165.6 186 57.5
Oeu037371.1 Olea europaea HOM05D006014 ORTHO05D007608 5.2e-39 165.2 166 62.0
Oeu051088.1 Olea europaea HOM05D006014 ORTHO05D007608 6.8e-39 164.9 163 62.0
HanXRQChr10g0302621 Helianthus annuus HOM05D006014 ORTHO05D007608 2.6e-38 162.9 203 55.7
Psat4g136440 Pisum sativum HOM05D006014 ORTHO05D007608 4.4e-38 162.2 169 57.4
MSTRG.12894 Avicennia marina HOM05D006014 ORTHO05D007608 9.8e-38 161.0 194 56.7
Nitab4.5_0000332g0180 Nicotiana tabacum HOM05D006014 ORTHO05D007608 9.8e-38 161.0 196 55.1
Phvul.011G162800 Phaseolus vulgaris HOM05D006014 ORTHO05D007608 2.2e-37 159.8 193 55.4
Lalb_Chr07g0182891 Lupinus albus HOM05D006014 ORTHO05D007608 2.9e-37 159.5 183 59.0
TWI39G1175 Tripterygium wilfordii HOM05D006014 ORTHO05D007608 4.9e-37 158.7 126 68.3
Sc03g0010200 Simmondsia chinensis HOM05D006014 ORTHO05D007608 6.4e-37 158.3 198 55.1
ECA234G0345 Erigeron canadensis HOM05D006014 ORTHO05D007608 8.3e-37 157.9 191 56.5
Hund04492 Selenicereus undatus HOM05D006014 ORTHO05D007608 8.3e-37 157.9 202 55.4
MBI07_g30170_MAGBIO Magnolia biondii HOM05D006014 ORTHO05D007608 1.9e-36 156.8 181 55.8
SalBow8G3070 Salvia bowleyana HOM05D006014 ORTHO05D007608 2.4e-36 156.4 192 56.2
ATR0737G141 Amborella trichopoda HOM05D006014 ORTHO05D007608 7.0e-36 154.8 114 74.6
Ah.06g184580 Amaranthus hybridus HOM05D006014 ORTHO05D007608 4.6e-35 152.1 200 53.0
arahy.Tifrunner.gnm1.ann1.FY4UJ9 Arachis hypogaea HOM05D006014 ORTHO05D007608 3.9e-34 149.1 235 49.4
AUR62019472 Chenopodium quinoa HOM05D006014 ORTHO05D007608 4.3e-33 145.6 194 52.1
EL10Ac4g08237 Beta vulgaris HOM05D006014 ORTHO05D007608 9.5e-33 144.4 193 52.3
AUR62036161 Chenopodium quinoa HOM05D006014 ORTHO05D007608 2.1e-32 143.3 194 53.1
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 2.8e-32 142.9 192 54.2
Sed0026173 Sechium edule HOM05D006014 ORTHO05D007608 3.1e-31 139.4 148 56.8
Rhsim04G0022600 Rhododendron simsii HOM05D006014 ORTHO05D007608 5.2e-31 138.7 184 53.8
SEGI_01083 Sequoiadendron giganteum HOM05D006014 ORTHO05D007608 4.9e-29 132.1 185 47.6
Lj8A154T77 Lonicera japonica HOM05D006014 ORTHO05D007608 9.2e-28 127.9 176 47.2
Lj3g0017472 Lotus japonicus HOM05D006014 ORTHO05D007608 9.2e-28 127.9 107 64.5
Mapoly0009s0159 Marchantia polymorpha HOM05D006014 ORTHO05D007608 1.2e-27 127.5 183 51.4
arahy.Tifrunner.gnm1.ann1.QT5AN8 Arachis hypogaea HOM05D006014 ORTHO05D007608 7.8e-27 124.8 288 38.2
Os01g0678600 Oryza sativa ssp. japonica HOM05D006014 ORTHO05D007608 3.9e-26 122.5 197 44.2
Pp3c20_13390 Physcomitrium patens HOM05D006014 ORTHO05D007608 5.6e-25 118.6 160 51.2
Zm00001eb360330 Zea mays HOM05D006014 ORTHO05D007608 2.1e-24 116.7 173 47.4
Pp3c24_17080 Physcomitrium patens HOM05D006014 ORTHO05D007608 8.9e-23 111.3 172 49.4
vmacro09523 Vaccinium macrocarpon HOM05D006014 ORTHO05D007608 3.7e-21 105.9 79 65.8
CBR_g30802 Chara braunii HOM05D006014 ORTHO05D007608 2.4e-20 103.2 116 51.7
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 9.2e-20 101.3 77 67.5
AagrBONN_evm.TU.Sc2ySwM_344.3794 Anthoceros agrestis HOM05D006014 ORTHO05D007608 3.3e-17 92.8 189 39.7
Cpa.g.sc131.85 Carica papaya HOM05D006014 ORTHO05D007608 1.2e-16 90.9 121 56.2
Gohir.A13G146850 Gossypium hirsutum HOM05D006014 ORTHO05D007608 1.2e-14 84.3 67 70.1
CBR_g39307 Chara braunii HOM05D006014 ORTHO05D007608 2.0e-14 83.6 86 53.5
Cre12.g494750 Chlamydomonas reinhardtii HOM05D006014 ORTHO05D007608 2.9e-13 79.7 106 49.1
Dinv20203 Davidia involucrata HOM05D006014 ORTHO05D007608 9.2e-12 74.7 121 49.6
Atru.chr2.2408 Acer truncatum HOM05D006014 ORTHO05D007608 1.9e-09 67.0 50 72.0
MCO10G118 Micromonas commoda HOM05D006014 ORTHO05D007608 1.9e-09 67.0 81 49.4
HPP92_010061 Vanilla planifolia HOM05D006014 ORTHO05D007608 5.6e-09 65.5 74 59.5
QL11p029078 Quercus lobata HOM05D006014 ORTHO05D013998 4.7e-08 62.4 40 82.5


User provided reference genes

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