Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 0.0e+00 1234.2 679 100.0
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 1.5e-289 999.2 690 83.8
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 3.3e-244 848.6 694 73.9
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 3.7e-235 818.5 704 73.3
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 2.7e-225 785.8 699 72.0
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.4e-210 736.1 699 66.5
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 6.8e-197 691.4 692 66.2
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 9.9e-196 687.6 689 66.0
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 1.7e-192 676.8 689 65.9
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 1.7e-192 676.8 689 65.9
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.3e-190 670.6 643 65.3
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 3.6e-190 669.1 693 65.5
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 2.2e-171 606.7 614 63.2
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 5.1e-168 595.5 614 62.7
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 6.7e-168 595.1 614 62.9
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 3.5e-132 476.5 421 73.6
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 2.3e-128 463.8 540 58.9
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.3e-126 458.0 812 42.1
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 2.7e-108 397.1 772 42.1
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 2.7e-108 397.1 793 43.0
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 1.1e-106 391.7 767 40.2
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 1.5e-106 391.3 788 39.2
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 6.2e-105 386.0 764 41.5
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 8.0e-105 385.6 786 41.2
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-104 384.8 748 42.2
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 5.2e-104 382.9 777 39.1
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 1.5e-103 381.3 785 41.5
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 3.4e-103 380.2 753 42.5
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.7e-102 377.9 756 42.3
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 7.0e-101 372.5 775 40.3
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 9.2e-101 372.1 789 40.8
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.2e-100 371.7 770 41.7
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 2.0e-100 370.9 785 40.9
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 7.8e-100 369.0 771 39.9
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.5e-98 364.8 759 40.7
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 9.5e-98 362.1 748 40.1
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 2.1e-97 360.9 798 39.3
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 4.7e-97 359.8 786 39.1
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 6.2e-97 359.4 783 40.5
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.1e-96 358.6 746 39.8
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 1.1e-96 358.6 781 38.8
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 4.0e-96 356.7 791 39.2
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 5.2e-96 356.3 789 40.1
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 2.6e-95 354.0 766 39.8
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 5.8e-95 352.8 773 40.5
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.3e-94 351.7 752 40.0
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 1.1e-93 348.6 808 39.1
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.9e-93 347.8 780 39.2
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 2.4e-93 347.4 759 38.9
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 4.1e-93 346.7 789 37.9
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 2.1e-92 344.4 755 38.3
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 3.9e-91 340.1 758 41.3
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 6.6e-91 339.3 770 39.7
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.5e-90 337.4 769 39.7
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 2.5e-90 337.4 742 38.8
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 3.3e-90 337.0 715 40.0
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 5.6e-90 336.3 728 40.5
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-89 335.1 644 41.3
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 8.1e-89 332.4 745 38.4
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 5.2e-88 329.7 779 39.0
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.2e-87 328.6 787 38.0
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 1.5e-87 328.2 768 40.6
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 5.8e-87 326.2 769 39.5
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 1.3e-86 325.1 835 36.9
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 6.4e-86 322.8 860 36.9
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 1.9e-85 321.2 768 39.2
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.9e-85 321.2 736 38.2
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 7.1e-85 319.3 821 37.1
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 2.7e-84 317.4 686 39.9
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 7.8e-84 315.8 728 39.7
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 1.6e-81 308.1 745 36.8
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 2.1e-81 307.8 802 36.5
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.4e-80 305.1 758 37.3
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 5.2e-80 303.1 772 38.1
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 6.8e-80 302.8 680 41.6
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 2.6e-79 300.8 753 36.8
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.3e-78 298.5 750 36.7
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 2.2e-78 297.7 751 39.5
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 2.9e-78 297.4 816 36.3
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 4.9e-78 296.6 718 39.6
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.4e-78 296.2 594 41.6
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.9e-77 294.7 708 37.6
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 9.3e-77 292.4 720 38.2
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.1e-76 291.2 678 37.5
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.7e-76 290.8 671 39.2
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 4.6e-76 290.0 669 37.2
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 1.1e-74 285.4 801 37.7
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 7.3e-74 282.7 708 38.4
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 5.3e-72 276.6 768 36.2
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 4.4e-71 273.5 739 34.9
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 4.4e-71 273.5 714 36.8
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.2e-70 271.2 719 39.6
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 2.9e-70 270.8 716 34.8
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 3.8e-70 270.4 727 35.6
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.4e-69 268.5 775 35.2
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.4e-69 267.7 726 37.5
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.2e-68 265.4 677 35.2
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 3.5e-68 263.8 677 38.6
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 1.7e-67 261.5 726 37.5
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.7e-67 261.5 756 35.3
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 3.9e-67 260.4 710 36.6
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 8.7e-67 259.2 602 36.9
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.1e-66 258.8 732 35.4
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 1.9e-66 258.1 674 35.5
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 2.5e-66 257.7 783 33.7
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.3e-65 255.4 725 36.3
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 1.8e-64 251.5 735 35.1
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 9.0e-64 249.2 807 34.7
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 9.0e-64 249.2 742 34.4
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 2.6e-63 247.7 713 35.8
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 2.6e-63 247.7 708 36.6
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 2.6e-63 247.7 825 32.6
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 9.9e-63 245.7 730 37.7
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 1.1e-61 242.3 685 35.3
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 2.4e-61 241.1 693 34.9
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 1.6e-60 238.4 790 32.7
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.3e-59 234.6 655 35.9
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 3.3e-58 230.7 676 33.7
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 7.4e-58 229.6 802 34.8
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 2.8e-57 227.6 676 34.9
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 3.7e-57 227.3 588 36.9
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 1.8e-56 224.9 666 35.6
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.5e-55 221.9 701 35.1
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.7e-54 218.4 736 33.3
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 2.2e-54 218.0 819 31.7
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 3.8e-54 217.2 620 36.9
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 8.4e-54 216.1 734 33.0
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 1.1e-53 215.7 680 34.3
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.8e-51 208.4 745 33.0
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 5.7e-50 203.4 661 34.5
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 7.4e-50 203.0 777 32.4
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 4.1e-48 197.2 664 33.6
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.2e-47 195.7 723 31.1
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.3e-46 192.2 448 39.3
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 6.5e-46 189.9 538 36.6
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 8.4e-46 189.5 664 32.7
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.3e-43 182.2 654 32.3
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 3.9e-43 180.6 607 36.4
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 1.8e-40 171.8 657 32.4
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 1.8e-40 171.8 858 28.9
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 5.9e-39 166.8 843 29.1
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.8e-35 155.2 741 30.4
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 3.0e-35 154.5 663 32.1
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 8.8e-35 152.9 865 29.4
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.7e-33 148.7 791 29.5
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 8.2e-33 146.4 162 52.5
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.1e-32 144.1 358 39.4
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 4.5e-31 140.6 216 43.1
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 4.5e-31 140.6 656 29.0
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 1.9e-29 135.2 284 38.4
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 1.2e-28 132.5 286 38.5
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 5.1e-27 127.1 321 37.1
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 1.4e-24 119.0 184 46.7
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 2.4e-24 118.2 763 28.3
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 3.5e-23 114.4 144 49.3
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 5.9e-23 113.6 294 36.4
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 1.6e-20 105.5 221 40.7
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 6.1e-20 103.6 90 55.6
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 8.0e-20 103.2 217 40.6
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 1.8e-19 102.1 483 31.1
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.2e-17 95.1 184 35.9
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.2e-12 79.3 633 24.8
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 1.2e-12 79.3 158 43.0
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 2.1e-12 78.6 50 78.0
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 2.6e-10 71.6 228 30.3
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 7.5e-10 70.1 112 51.8
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 4.1e-08 64.3 125 47.2
PGR004G1454 Punica granatum HOM05D004499 ORTHO05D004928 3.5e-07 61.2 364 28.0
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 3.8e-06 57.8 325 25.5
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 5.0e-06 57.4 337 26.7


User provided reference genes

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