Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g12060 Schrenkiella parvula HOM05D006504 ORTHO05D007867 8.2e-58 226.9 116 100.0
Thhalv10022201m.g Eutrema salsugineum HOM05D006504 ORTHO05D007867 1.5e-22 109.8 83 71.1
THA.LOC104822636 Tarenaya hassleriana HOM05D006504 ORTHO05D007867 4.2e-22 108.2 82 65.9
Sp1g40740 Schrenkiella parvula HOM05D006504 ORTHO05D007867 8.8e-20 100.5 89 59.6
AL1G63070 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 1.5e-19 99.8 103 53.4
AT1G55080 Arabidopsis thaliana HOM05D006504 ORTHO05D007867 1.5e-19 99.8 111 51.4
Carub.0001s4357 Capsella rubella HOM05D006504 ORTHO05D007867 5.7e-19 97.8 90 56.7
FAN09G0296 Fragaria x ananassa HOM05D006504 ORTHO05D007867 3.7e-18 95.1 87 58.6
FAN02G0681 Fragaria x ananassa HOM05D006504 ORTHO05D007867 4.8e-18 94.7 83 61.4
FvH4_6g33500 Fragaria vesca HOM05D006504 ORTHO05D007867 6.3e-18 94.4 79 62.0
FAN14G5793 Fragaria x ananassa HOM05D006504 ORTHO05D007867 6.3e-18 94.4 79 62.0
BcaC08g44177 Brassica carinata HOM05D001264 ORTHO05D001167 4.1e-17 91.7 87 59.8
A08p01030 Brassica napus HOM05D001264 ORTHO05D007867 4.1e-17 91.7 79 60.8
C03p92210 Brassica napus HOM05D001264 ORTHO05D007867 4.1e-17 91.7 79 60.8
C06p15780 Brassica napus HOM05D001264 ORTHO05D001167 4.1e-17 91.7 87 58.6
BraA08t32155Z Brassica rapa HOM05D006504 ORTHO05D007867 4.1e-17 91.7 88 58.0
Prupe.3G049000 Prunus persica HOM05D006504 ORTHO05D007867 4.1e-17 91.7 79 60.8
A05p17670 Brassica napus HOM05D006504 ORTHO05D007867 5.3e-17 91.3 99 54.5
FAN21G2275 Fragaria x ananassa HOM05D006504 ORTHO05D007867 5.3e-17 91.3 78 60.3
Cpa.g.sc25.42 Carica papaya HOM05D006504 ORTHO05D007867 1.2e-16 90.1 79 58.2
BolC3t21536H Brassica oleracea HOM05D006504 ORTHO05D007867 1.6e-16 89.7 88 56.8
CARHR044670 Cardamine hirsuta HOM05D006504 ORTHO05D007867 1.6e-16 89.7 98 54.1
BolC6t36770H Brassica oleracea HOM05D006504 ORTHO05D007867 2.0e-16 89.4 81 59.3
MD09G1192700 Malus domestica HOM05D006504 ORTHO05D007867 2.0e-16 89.4 79 59.5
RcHm_v2.0_Chr2g0143361 Rosa chinensis HOM05D006504 ORTHO05D007867 2.0e-16 89.4 80 57.5
BcaC01g01455 Brassica carinata HOM05D006504 ORTHO05D007867 3.5e-16 88.6 88 55.7
BraA05t20659Z Brassica rapa HOM05D006504 ORTHO05D007867 3.5e-16 88.6 99 52.5
BcaB04g17003 Brassica carinata HOM05D006504 ORTHO05D007867 4.5e-16 88.2 88 55.7
MELO3C030574.2 Cucumis melo HOM05D006504 ORTHO05D007867 1.0e-15 87.0 83 53.0
Lj5A44T119 Lonicera japonica HOM05D006504 ORTHO05D007867 1.0e-15 87.0 110 50.0
Nn8g38840 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.0e-15 87.0 80 58.8
CsaV3_3G043850 Cucumis sativus L. HOM05D006504 ORTHO05D007867 1.3e-15 86.7 82 53.7
Hma1.2p1_0388F.1_g142400 Hydrangea macrophylla HOM05D006504 ORTHO05D007867 1.3e-15 86.7 80 57.5
Nn8g38837 Nelumbo nucifera HOM05D006504 ORTHO05D007867 1.7e-15 86.3 81 58.0
Medtr8g017180 Medicago truncatula HOM05D006504 ORTHO05D007867 2.2e-15 85.9 80 56.2
Cc05_g02540 Coffea canephora HOM05D006504 ORTHO05D007867 2.9e-15 85.5 80 55.0
Nn5g26799 Nelumbo nucifera HOM05D006504 ORTHO05D007867 3.8e-15 85.1 81 56.8
Atru.chr1.3757 Acer truncatum HOM05D006504 ORTHO05D007867 5.0e-15 84.7 79 58.2
Duzib235G1492 Durio zibethinus HOM05D006504 ORTHO05D007867 5.0e-15 84.7 79 57.0
VMungo0331G1418 Vigna mungo HOM05D006504 ORTHO05D007867 5.0e-15 84.7 80 56.2
GSVIVG01016863001 Vitis vinifera HOM05D006504 ORTHO05D007867 5.0e-15 84.7 79 59.5
TPR.G37598 Trifolium pratense HOM05D006504 ORTHO05D007867 6.5e-15 84.3 80 55.0
Lalb_Chr25g0280741 Lupinus albus HOM05D006504 ORTHO05D007867 8.5e-15 84.0 80 55.0
Thecc.06G112500 Theobroma cacao HOM05D006504 ORTHO05D007867 8.5e-15 84.0 79 55.7
TAR383G0025 Trochodendron aralioides HOM05D006504 ORTHO05D007867 1.1e-14 83.6 78 56.4
Glyma.07G009300 Glycine max HOM05D006504 ORTHO05D007867 1.5e-14 83.2 80 55.0
Lj3g0009120 Lotus japonicus HOM05D006504 ORTHO05D007867 1.5e-14 83.2 80 53.8
HPP92_023888 Vanilla planifolia HOM05D006504 ORTHO05D007867 1.5e-14 83.2 79 54.4
CSS0018438 Camellia sinensis var. sinensis HOM05D006504 ORTHO05D007867 1.9e-14 82.8 78 53.8
Carub.0001s2784 Capsella rubella HOM05D006504 ORTHO05D007867 1.9e-14 82.8 107 46.7
TWI31G0577 Tripterygium wilfordii HOM05D006504 ORTHO05D007867 2.5e-14 82.4 79 55.7
Eucgr.F03135 Eucalyptus grandis HOM05D006504 ORTHO05D007867 3.2e-14 82.0 80 53.8
Aqoxy5G00309 Aquilegia oxysepala HOM05D006504 ORTHO05D007867 4.2e-14 81.6 79 55.7
Potri.003G037200 Populus trichocarpa HOM05D006504 ORTHO05D007867 4.2e-14 81.6 79 55.7
arahy.Tifrunner.gnm1.ann1.2CYW67 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.5e-14 81.3 80 53.8
arahy.Tifrunner.gnm1.ann1.S1QT98 Arachis hypogaea HOM05D006504 ORTHO05D007867 5.5e-14 81.3 80 53.8
Glyma.08G192500 Glycine max HOM05D006504 ORTHO05D007867 7.2e-14 80.9 80 53.8
Psat4g188440 Pisum sativum HOM05D006504 ORTHO05D007867 7.2e-14 80.9 80 53.8
CiPaw.01G224400 Carya illinoinensis HOM05D006504 ORTHO05D007867 9.4e-14 80.5 90 50.0
PSO210G6889 Papaver somniferum HOM05D006504 ORTHO05D007867 9.4e-14 80.5 79 54.4
BcaB03g13872 Brassica carinata HOM05D006504 ORTHO05D007867 1.2e-13 80.1 77 57.1
Gohir.A05G135200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.2e-13 80.1 78 52.6
Gohir.D05G137200 Gossypium hirsutum HOM05D006504 ORTHO05D007867 1.2e-13 80.1 78 52.6
Gorai.009G141600 Gossypium raimondii HOM05D006504 ORTHO05D007867 1.2e-13 80.1 78 52.6
HanXRQChr12g0360501 Helianthus annuus HOM05D006504 ORTHO05D007867 1.6e-13 79.7 80 51.2
PSO210G7829 Papaver somniferum HOM05D006504 ORTHO05D007867 1.6e-13 79.7 79 54.4
arahy.Tifrunner.gnm1.ann1.Y1EG1J Arachis hypogaea HOM05D006504 ORTHO05D007867 2.1e-13 79.3 80 52.5
Gohir.D10G060350 Gossypium hirsutum HOM05D006504 ORTHO05D007867 2.7e-13 79.0 80 52.5
Gorai.011G064600 Gossypium raimondii HOM05D006504 ORTHO05D007867 3.6e-13 78.6 80 52.5
Lsat_1_v5_gn_5_135100 Lactuca sativa HOM05D006504 ORTHO05D007867 3.6e-13 78.6 80 50.0
BcaC06g35444 Brassica carinata HOM05D006504 ORTHO05D007867 4.7e-13 78.2 86 51.2
C07p16100 Brassica napus HOM05D006504 ORTHO05D007867 4.7e-13 78.2 86 51.2
BolC7t42095H Brassica oleracea HOM05D006504 ORTHO05D007867 4.7e-13 78.2 86 51.2
Manes.04G140200 Manihot esculenta HOM05D006504 ORTHO05D007867 6.1e-13 77.8 80 51.2
Ah.08g216230 Amaranthus hybridus HOM05D006504 ORTHO05D007867 8.0e-13 77.4 80 53.8
ATR0800G060 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.0e-12 77.0 90 45.6
A07p10460 Brassica napus HOM05D006504 ORTHO05D007867 1.4e-12 76.6 86 51.2
BraA07t28846Z Brassica rapa HOM05D006504 ORTHO05D007867 1.4e-12 76.6 86 51.2
HPP92_023833 Vanilla planifolia HOM05D006504 ORTHO05D007867 1.4e-12 76.6 74 52.7
Ciclev10026403m.g Citrus clementina HOM05D006504 ORTHO05D007867 1.8e-12 76.3 79 51.9
Solyc02g069520.2 Solanum lycopersicum HOM05D006504 ORTHO05D007867 1.8e-12 76.3 80 48.8
Sopen02g018660 Solanum pennellii HOM05D006504 ORTHO05D007867 1.8e-12 76.3 80 48.8
MSTRG.22579 Avicennia marina HOM05D006504 ORTHO05D007867 2.3e-12 75.9 77 51.9
CAN.G675.25 Capsicum annuum HOM05D006504 ORTHO05D007867 2.3e-12 75.9 80 50.0
Manes.11G025900 Manihot esculenta HOM05D006504 ORTHO05D007867 3.0e-12 75.5 84 50.0
QL05p000757 Quercus lobata HOM05D006504 ORTHO05D007867 3.0e-12 75.5 78 52.6
Aa31LG8G1010 Aethionema arabicum HOM05D006504 ORTHO05D007867 5.2e-12 74.7 119 40.3
QL05p000665 Quercus lobata HOM05D006504 ORTHO05D007867 6.8e-12 74.3 78 51.3
ECA234G1551 Erigeron canadensis HOM05D000001 ORTHO05D009948 8.8e-12 73.9 80 46.2
PGR102G0591 Punica granatum HOM05D006504 ORTHO05D007867 1.2e-11 73.6 82 47.6
Aa31LG10G870 Aethionema arabicum HOM05D006504 ORTHO05D007867 1.5e-11 73.2 136 39.0
ATR0661G108 Amborella trichopoda HOM05D006504 ORTHO05D007867 1.5e-11 73.2 94 44.7
Peaxi162Scf00195g00313 Petunia axillaris HOM05D006504 ORTHO05D007867 1.5e-11 73.2 77 49.4
CDE04G1380 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 2.0e-11 72.8 87 47.1
CDE06G0601 Ceratophyllum demersum HOM05D006504 ORTHO05D007867 3.4e-11 72.0 83 48.2
Migut.I01030 Erythranthe guttata HOM05D006504 ORTHO05D007867 4.4e-11 71.6 78 50.0
Os01g0501000 Oryza sativa ssp. japonica HOM05D006504 ORTHO05D007867 4.4e-11 71.6 78 47.4
Sc12g0010270 Simmondsia chinensis HOM05D006504 ORTHO05D007867 5.7e-11 71.2 64 56.2
COL.COLO4_30670 Corchorus olitorius HOM05D006504 ORTHO05D007867 7.5e-11 70.9 78 51.3
Cfa003580 Carpinus fangiana HOM05D006504 ORTHO05D007867 1.7e-10 69.7 68 55.9
arahy.Tifrunner.gnm1.ann1.IBA4C6 Arachis hypogaea HOM05D006504 ORTHO05D007867 1.8e-09 66.2 68 52.9
AL1G43430 Arabidopsis lyrata HOM05D006504 ORTHO05D007867 2.4e-09 65.9 75 50.7
ClCG07G013760 Citrullus lanatus HOM05D006504 ORTHO05D007867 2.7e-08 62.4 115 37.4
PGSC0003DMG400021202 Solanum tuberosum HOM05D006504 ORTHO05D007867 5.9e-08 61.2 80 43.8
Mapoly0004s0244 Marchantia polymorpha HOM05D006504 ORTHO05D007867 1.3e-07 60.1 96 40.6
Rhsim12G0206400 Rhododendron simsii HOM05D006504 ORTHO05D007867 5.0e-07 58.2 100 41.0
SEGI_28258 Sequoiadendron giganteum HOM05D006504 ORTHO05D007867 4.2e-06 55.1 80 42.5
SGA_v2.0_scaffold127G34055 Striga asiatica HOM05D006504 ORTHO05D007867 7.2e-06 54.3 88 39.8


User provided reference genes

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