Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 6.7e-134 480.7 247 100.0
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 8.2e-124 447.2 247 92.7
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 1.0e-121 440.3 245 90.6
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 8.5e-121 437.2 243 90.5
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.0e-118 430.3 250 89.6
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.3e-116 423.3 244 89.3
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 1.8e-115 419.5 252 86.9
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 4.1e-115 418.3 250 86.8
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 3.4e-114 415.2 248 87.1
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 4.5e-114 414.8 250 86.4
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 3.6e-111 405.2 244 86.1
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 2.0e-106 389.4 250 82.4
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 2.3e-94 349.4 238 76.5
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 2.3e-94 349.4 241 74.3
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 5.7e-93 344.7 238 74.8
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 1.3e-92 343.6 238 74.8
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 4.1e-91 338.6 241 73.4
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 4.1e-91 338.6 236 75.0
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 1.1e-88 330.5 236 72.9
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 1.1e-88 330.5 238 72.7
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.5e-88 330.1 240 74.6
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 1.8e-86 323.2 230 73.9
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 4.4e-85 318.5 230 73.0
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 4.4e-85 318.5 230 73.0
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 3.7e-84 315.5 244 71.3
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 4.1e-83 312.0 234 72.6
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 5.4e-83 311.6 238 70.6
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 2.7e-74 282.7 222 64.4
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 6.6e-73 278.1 223 64.6
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 1.6e-71 273.5 222 63.1
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 2.1e-71 273.1 231 60.2
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 2.8e-71 272.7 224 63.4
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 6.1e-71 271.6 226 61.1
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 1.0e-70 270.8 224 63.4
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 1.0e-70 270.8 226 62.8
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 1.8e-70 270.0 224 62.9
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 5.2e-70 268.5 233 60.1
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 1.2e-69 267.3 224 62.5
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 2.0e-69 266.5 227 61.7
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 3.4e-69 265.8 225 60.0
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 4.4e-69 265.4 220 62.3
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 7.5e-69 264.6 232 61.2
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 2.2e-68 263.1 226 60.2
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 2.9e-68 262.7 239 59.4
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 3.7e-68 262.3 238 59.7
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 8.3e-68 261.2 235 59.6
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 1.1e-67 260.8 232 61.2
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 1.9e-67 260.0 238 59.7
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 1.9e-67 260.0 236 61.4
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 2.4e-67 259.6 241 59.3
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 7.0e-67 258.1 221 61.5
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 9.2e-67 257.7 226 61.1
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 9.2e-67 257.7 228 59.2
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 9.2e-67 257.7 226 61.1
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 9.2e-67 257.7 223 61.0
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 1.2e-66 257.3 226 61.5
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 1.2e-66 257.3 242 59.1
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.5e-66 255.8 234 59.4
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 4.6e-66 255.4 247 56.7
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 7.8e-66 254.6 231 61.0
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 1.0e-65 254.2 216 63.4
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 1.0e-65 254.2 236 56.8
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 1.3e-65 253.8 225 60.0
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 1.3e-65 253.8 224 59.8
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.7e-65 253.4 222 59.9
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 1.7e-65 253.4 234 59.0
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 2.3e-65 253.1 219 61.6
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.1e-64 250.8 213 61.5
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 1.9e-64 250.0 244 57.0
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.9e-64 250.0 234 58.1
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 2.5e-64 249.6 262 53.8
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 5.6e-64 248.4 217 58.5
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 5.6e-64 248.4 239 58.6
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 2.8e-63 246.1 240 57.9
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 2.3e-62 243.0 221 58.8
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.3e-62 243.0 231 53.7
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 3.1e-62 242.7 228 58.3
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 2.0e-61 240.0 264 52.7
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 5.8e-61 238.4 228 56.6
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 7.5e-61 238.0 219 59.8
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 1.7e-60 236.9 215 58.1
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 3.7e-60 235.7 218 60.6
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.4e-59 233.8 232 54.7
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 2.4e-59 233.0 141 85.8
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.4e-59 233.0 218 57.3
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 2.4e-59 233.0 153 70.6
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 5.4e-59 231.9 172 63.4
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 7.1e-59 231.5 234 56.0
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 7.1e-59 231.5 153 72.5
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 7.1e-59 231.5 223 57.8
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 2.7e-58 229.6 195 61.0
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 4.6e-58 228.8 179 63.1
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.0e-57 227.6 256 50.4
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 1.7e-57 226.9 219 56.6
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 2.3e-57 226.5 202 59.4
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 2.3e-57 226.5 231 51.5
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 2.3e-57 226.5 230 52.6
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 5.6e-56 221.9 280 48.9
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 1.4e-54 217.2 210 53.8
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 5.2e-54 215.3 212 57.5
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 8.9e-54 214.5 242 50.8
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 2.9e-52 209.5 171 59.6
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 6.4e-52 208.4 169 60.4
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 7.8e-50 201.4 235 48.5
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 1.0e-49 201.1 152 64.5
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 8.6e-49 198.0 133 68.4
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 4.0e-46 189.1 145 62.1
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 2.0e-45 186.8 227 49.3
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 2.1e-42 176.8 186 49.5
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 6.0e-42 175.3 147 59.2
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 6.0e-42 175.3 139 60.4
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 2.3e-41 173.3 191 51.8
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 5.1e-41 172.2 226 46.5
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 1.3e-39 167.5 176 50.6
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.8e-38 163.7 157 57.3
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 2.6e-37 159.8 151 50.3
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 2.9e-36 156.4 113 64.6
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 7.1e-35 151.8 133 54.1
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 2.1e-31 140.2 181 47.5
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.8e-28 129.4 92 70.7
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 1.4e-27 127.5 74 74.3
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 5.5e-27 125.6 93 65.6
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 1.5e-24 117.5 119 53.8
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 2.0e-21 107.1 174 38.5
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 1.9e-19 100.5 59 74.6
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 2.1e-15 87.0 74 58.1
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 6.9e-14 82.0 54 70.4
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.5e-13 80.9 118 40.7
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 2.6e-13 80.1 106 41.5
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 1.3e-09 67.8 217 30.9
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 2.5e-08 63.5 128 28.9
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.8e-06 57.4 36 72.2


User provided reference genes

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