Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 8.4e-137 490.3 246 100.0
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 4.5e-122 441.4 247 87.0
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 2.2e-121 439.1 247 87.0
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 2.2e-121 439.1 247 87.0
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 2.2e-121 439.1 247 87.0
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 2.9e-121 438.7 247 87.4
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 3.2e-120 435.3 247 86.6
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 2.7e-119 432.2 247 87.9
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 1.3e-118 429.9 247 87.4
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 1.3e-118 429.9 247 87.4
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 6.7e-118 427.6 243 85.6
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 1.1e-117 426.8 243 85.6
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 1.5e-117 426.4 242 85.1
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 1.5e-117 426.4 242 85.1
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 1.5e-117 426.4 242 85.1
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 4.3e-117 424.9 247 87.9
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 2.0e-114 416.0 247 85.8
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 7.2e-112 407.5 247 84.2
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 1.6e-103 379.8 254 76.4
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 3.1e-99 365.5 248 77.8
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 1.4e-94 350.1 246 71.5
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 5.9e-90 334.7 227 73.1
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 5.9e-90 334.7 228 73.2
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.0e-89 334.0 223 73.5
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 3.8e-89 332.0 227 71.4
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 5.0e-89 331.6 230 70.0
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 6.5e-89 331.3 227 71.8
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.1e-88 330.5 228 70.6
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 1.5e-88 330.1 239 70.7
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 1.5e-88 330.1 243 67.5
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 3.2e-88 328.9 245 67.3
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 4.2e-88 328.6 217 74.2
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 5.5e-88 328.2 225 72.9
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 7.2e-88 327.8 230 73.9
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 7.2e-88 327.8 244 70.5
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 7.2e-88 327.8 218 74.8
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 9.4e-88 327.4 216 75.0
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.2e-87 327.0 218 73.4
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 1.6e-87 326.6 225 72.4
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 2.1e-87 326.2 223 70.0
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 2.7e-87 325.9 223 71.7
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 3.6e-87 325.5 215 72.6
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 3.6e-87 325.5 247 65.6
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.6e-87 325.5 225 72.4
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 3.6e-87 325.5 225 72.4
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 3.6e-87 325.5 238 67.6
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 4.7e-87 325.1 242 67.8
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 4.7e-87 325.1 218 73.4
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 8.0e-87 324.3 231 71.4
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 1.0e-86 323.9 213 75.6
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 1.0e-86 323.9 245 67.8
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 1.0e-86 323.9 242 68.2
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 1.4e-86 323.6 225 71.6
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 1.4e-86 323.6 242 68.2
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 1.4e-86 323.6 238 68.9
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 1.8e-86 323.2 225 69.3
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 1.8e-86 323.2 242 67.4
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 3.0e-86 322.4 244 67.6
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 3.0e-86 322.4 227 69.6
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 4.0e-86 322.0 213 75.1
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 4.0e-86 322.0 247 64.8
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 5.2e-86 321.6 216 72.7
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 8.8e-86 320.9 219 71.7
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 8.8e-86 320.9 245 68.6
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 8.8e-86 320.9 218 72.0
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 1.1e-85 320.5 245 65.7
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 1.1e-85 320.5 246 67.5
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 1.5e-85 320.1 216 73.1
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 1.5e-85 320.1 244 66.4
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 2.6e-85 319.3 225 71.6
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 2.6e-85 319.3 241 67.2
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 3.3e-85 318.9 244 67.2
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 4.4e-85 318.5 242 66.1
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.4e-85 318.5 225 72.0
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 1.3e-84 317.0 214 72.4
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 1.3e-84 317.0 218 72.0
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 1.7e-84 316.6 237 66.7
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 2.8e-84 315.8 253 67.6
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 3.7e-84 315.5 216 72.2
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 4.8e-84 315.1 242 65.7
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 8.2e-84 314.3 241 64.3
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 8.2e-84 314.3 250 66.0
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 8.2e-84 314.3 252 63.9
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 1.4e-83 313.5 216 71.3
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 5.3e-83 311.6 223 67.7
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 5.3e-83 311.6 219 69.9
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 9.1e-83 310.8 216 71.8
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 1.2e-82 310.5 219 69.9
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 2.0e-82 309.7 228 67.1
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 3.5e-82 308.9 217 70.5
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 3.5e-82 308.9 219 68.9
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 7.7e-82 307.8 241 64.7
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.0e-81 307.4 232 65.9
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 1.3e-81 307.0 245 64.1
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 1.3e-81 307.0 232 66.4
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 8.5e-81 304.3 245 64.9
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 3.2e-80 302.4 241 62.7
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 3.2e-80 302.4 228 64.9
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 1.2e-79 300.4 241 63.5
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 1.6e-79 300.1 215 66.0
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 2.1e-79 299.7 216 67.6
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 3.6e-79 298.9 236 62.3
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 1.0e-78 297.4 216 69.0
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 3.0e-78 295.8 216 65.7
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 4.0e-78 295.4 219 64.4
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 7.5e-77 291.2 245 60.0
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 3.7e-76 288.9 232 60.3
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 4.1e-75 285.4 211 64.9
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 7.0e-75 284.6 213 64.8
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 9.1e-75 284.3 204 67.6
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 5.5e-72 275.0 241 58.5
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 7.2e-72 274.6 214 62.6
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 1.2e-71 273.9 232 60.3
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 2.1e-71 273.1 236 57.2
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 8.0e-71 271.2 238 56.7
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 6.3e-68 261.5 179 70.9
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 7.0e-67 258.1 225 58.2
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 6.8e-62 241.5 241 55.2
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 3.0e-57 226.1 190 60.5
SEGI_21458 Sequoiadendron giganteum HOM05D006345 ORTHO05D007428 1.4e-54 217.2 160 66.9
Cre01.g036750 Chlamydomonas reinhardtii HOM05D006345 ORTHO05D007428 1.4e-43 180.6 215 44.7
CAN.G1126.44 Capsicum annuum HOM05D006345 ORTHO05D007428 5.1e-41 172.2 161 55.9
Zm00001eb141630 Zea mays HOM05D006345 ORTHO05D007428 1.1e-40 171.0 144 61.8
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 5.6e-40 168.7 112 69.6
Potri.003G157201 Populus trichocarpa HOM05D006345 ORTHO05D007428 1.2e-34 151.0 115 66.1
MCO02G297 Micromonas commoda HOM05D006345 ORTHO05D007428 3.1e-30 136.3 170 43.5
Sabra03G0114100 Salix brachista HOM05D000029 ORTHO05D000854 1.2e-26 124.4 189 39.2
Zm00001eb356470 Zea mays HOM05D006345 ORTHO05D007428 3.3e-24 116.3 105 57.1
ATR0006G036 Amborella trichopoda HOM05D006345 ORTHO05D007428 6.0e-10 68.9 48 64.6
Cfa025913 Carpinus fangiana HOM05D006345 ORTHO05D007428 1.9e-08 63.9 218 25.2
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 4.3e-08 62.8 47 57.4


User provided reference genes

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