Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 2.0e-53 212.2 111 100.0
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 2.1e-47 192.2 117 89.7
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 9.6e-40 166.8 114 82.5
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 1.3e-39 166.4 118 84.7
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 2.1e-39 165.6 118 84.7
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 2.1e-39 165.6 118 84.7
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 2.1e-39 165.6 118 84.7
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 2.1e-39 165.6 118 84.7
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 1.1e-38 163.3 111 82.0
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 2.4e-38 162.2 116 78.4
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 1.5e-37 159.5 114 79.8
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 1.5e-37 159.5 115 77.4
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 2.2e-36 155.6 116 77.6
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 4.6e-34 147.9 124 73.4
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 1.3e-33 146.4 101 79.2
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 7.1e-27 124.0 87 74.7
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 5.8e-21 104.4 120 55.0
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 5.5e-11 71.2 104 45.2
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 4.6e-10 68.2 103 43.7
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 4.6e-10 68.2 68 55.9
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 7.9e-10 67.4 103 46.6
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 1.0e-09 67.0 102 47.1
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 1.8e-09 66.2 63 61.9
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 2.3e-09 65.9 89 47.2
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 6.7e-09 64.3 82 47.6
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 6.7e-09 64.3 70 51.4
C05p54700 Brassica napus HOM05D003402 ORTHO05D003939 8.8e-09 63.9 50 76.0
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 8.8e-09 63.9 104 42.3
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 8.8e-09 63.9 68 54.4
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.1e-08 63.5 58 53.4
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.1e-08 63.5 105 42.9
BraA05t22435Z Brassica rapa HOM05D003402 ORTHO05D003939 1.5e-08 63.2 52 73.1
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 1.5e-08 63.2 73 52.1
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.5e-08 63.2 95 44.2
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 1.9e-08 62.8 55 63.6
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 1.9e-08 62.8 90 45.6
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.3e-08 62.0 73 49.3
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 3.3e-08 62.0 95 43.2
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 3.3e-08 62.0 95 43.2
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 3.3e-08 62.0 78 46.2
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 3.3e-08 62.0 71 53.5
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 4.3e-08 61.6 84 45.2
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 4.3e-08 61.6 68 57.4
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 9.7e-08 60.5 71 46.5
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 9.7e-08 60.5 70 47.1
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 9.7e-08 60.5 89 43.8
A05p36350 Brassica napus HOM05D003402 ORTHO05D003939 1.3e-07 60.1 54 68.5
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.3e-07 60.1 85 47.1
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 1.3e-07 60.1 104 39.4
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.3e-07 60.1 96 41.7
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 1.3e-07 60.1 89 43.8
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 1.7e-07 59.7 102 41.2
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 1.7e-07 59.7 105 40.0
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 1.7e-07 59.7 105 40.0
TAR624G0725 Trochodendron aralioides HOM05D008067 ORTHO05D010226 1.7e-07 59.7 70 45.7
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 2.2e-07 59.3 73 49.3
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 2.2e-07 59.3 47 68.1
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 2.8e-07 58.9 106 39.6
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 2.8e-07 58.9 94 41.5
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.8e-07 58.9 52 61.5
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 2.8e-07 58.9 84 48.8
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 2.8e-07 58.9 90 42.2
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 3.7e-07 58.5 56 62.5
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 6.3e-07 57.8 57 52.6
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 6.3e-07 57.8 58 55.2
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 6.3e-07 57.8 98 41.8
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 8.2e-07 57.4 100 40.0
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 8.2e-07 57.4 56 62.5
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 8.2e-07 57.4 95 44.2
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 8.2e-07 57.4 98 41.8
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.1e-06 57.0 58 55.2
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 1.1e-06 57.0 58 55.2
Lsat_1_v5_gn_5_122340 Lactuca sativa HOM05D006736 ORTHO05D008459 1.1e-06 57.0 85 42.4
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 1.4e-06 56.6 46 60.9
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 1.8e-06 56.2 73 46.6
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 1.8e-06 56.2 80 46.2
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 1.8e-06 56.2 100 39.0
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.4e-06 55.8 99 42.4
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 2.4e-06 55.8 99 42.4
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 3.1e-06 55.5 72 40.3
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 3.1e-06 55.5 81 44.4
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 4.1e-06 55.1 96 42.7
Manes.03G019700 Manihot esculenta HOM05D008067 ORTHO05D010226 4.1e-06 55.1 77 44.2
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 4.1e-06 55.1 51 56.9
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 4.1e-06 55.1 70 45.7
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 5.3e-06 54.7 104 38.5
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 5.3e-06 54.7 56 57.1
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 6.9e-06 54.3 99 39.4
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 6.9e-06 54.3 90 40.0
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 6.9e-06 54.3 76 43.4
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 6.9e-06 54.3 59 54.2
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 6.9e-06 54.3 59 54.2
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 6.9e-06 54.3 90 38.9
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 6.9e-06 54.3 70 42.9
DCAR_028716 Daucus carota HOM05D008067 ORTHO05D010226 9.1e-06 53.9 49 55.1


User provided reference genes

Program Settings