Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 0.0e+00 2200.2 1185 100.0
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 0.0e+00 2112.0 1186 94.3
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 0.0e+00 2098.2 1185 93.6
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 0.0e+00 2090.1 1185 93.4
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 0.0e+00 2078.9 1185 93.2
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 0.0e+00 2072.7 1185 92.7
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 2050.8 1187 91.5
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 2033.5 1215 89.3
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 2033.1 1229 88.4
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 0.0e+00 2029.2 1229 88.2
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 2029.2 1229 88.2
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 0.0e+00 2027.3 1210 89.3
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1991.9 1185 91.4
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 0.0e+00 1986.1 1189 89.3
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1984.1 1175 91.4
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 0.0e+00 1963.7 1175 89.6
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 0.0e+00 1875.5 1185 83.4
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1718.7 1164 80.7
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 0.0e+00 1546.2 1230 69.6
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 0.0e+00 1535.0 1250 67.5
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1521.1 1221 68.4
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1517.7 1220 68.5
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1515.0 1216 68.3
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1507.7 1255 68.1
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1478.8 1227 66.5
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 0.0e+00 1477.2 1227 66.9
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1474.9 1226 66.4
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1466.4 1212 66.7
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 0.0e+00 1459.1 1228 67.4
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 0.0e+00 1458.7 1214 66.9
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 0.0e+00 1453.0 1208 66.3
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1452.2 1211 67.3
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 0.0e+00 1447.6 1204 67.7
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 0.0e+00 1445.6 1202 68.0
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 0.0e+00 1442.2 1217 65.7
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 0.0e+00 1436.8 1215 65.5
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 0.0e+00 1434.9 1221 66.0
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 0.0e+00 1429.5 1206 65.8
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 0.0e+00 1428.7 1209 66.2
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1420.6 1153 67.0
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 0.0e+00 1419.8 1217 64.4
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 0.0e+00 1419.4 1206 65.0
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 0.0e+00 1417.5 1210 65.5
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 0.0e+00 1416.0 1202 66.1
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 0.0e+00 1414.8 1139 67.2
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 0.0e+00 1407.9 1216 63.6
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 0.0e+00 1401.7 1197 64.9
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 0.0e+00 1400.2 1197 64.0
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 0.0e+00 1399.4 1202 63.8
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 0.0e+00 1394.0 1233 63.4
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1392.9 1156 65.1
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 0.0e+00 1388.6 1213 63.5
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 0.0e+00 1385.2 1216 63.6
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 0.0e+00 1372.1 1207 63.5
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 0.0e+00 1369.4 1150 64.3
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1368.6 1219 62.3
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 0.0e+00 1367.4 1213 62.9
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1365.9 1158 65.4
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 0.0e+00 1360.9 1209 62.6
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1360.9 1157 64.6
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1360.5 1219 61.9
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 0.0e+00 1359.7 1154 64.9
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1355.5 1219 61.9
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1355.1 1143 65.4
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 0.0e+00 1354.3 1152 64.8
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 0.0e+00 1352.8 1205 61.8
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 0.0e+00 1352.0 1202 64.3
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 0.0e+00 1351.7 1208 61.9
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1347.8 1219 61.7
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 0.0e+00 1341.6 1151 64.7
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 0.0e+00 1341.3 1141 63.8
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1338.6 1217 61.0
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1336.6 1222 61.9
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 0.0e+00 1336.6 1222 61.9
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 0.0e+00 1331.2 1151 64.1
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 0.0e+00 1329.3 1136 64.3
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 0.0e+00 1322.4 1217 63.2
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 0.0e+00 1317.0 1222 60.4
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 0.0e+00 1316.6 1199 61.5
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 0.0e+00 1305.8 1212 60.6
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1299.6 1155 61.6
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 0.0e+00 1297.7 1176 61.9
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 0.0e+00 1296.2 1348 56.9
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 0.0e+00 1293.5 1157 61.5
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 0.0e+00 1291.6 1222 59.6
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1288.1 1233 60.0
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 0.0e+00 1288.1 1416 53.8
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 0.0e+00 1283.1 1151 64.7
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 0.0e+00 1275.4 1153 61.2
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 0.0e+00 1267.7 1241 58.7
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 0.0e+00 1258.0 1153 60.6
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 0.0e+00 1200.3 1142 59.8
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 0.0e+00 1179.1 1021 63.0
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 0.0e+00 1147.5 1197 55.2
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 0.0e+00 1144.4 693 91.9
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 0.0e+00 1143.3 1061 60.3
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 0.0e+00 1119.8 1123 55.7
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 0.0e+00 1107.8 1182 56.4
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 0.0e+00 1103.6 1064 57.6
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 0.0e+00 1082.0 671 85.8
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 1.7e-307 1059.7 1150 54.3
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 9.2e-306 1053.9 821 69.4
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 1.0e-304 1050.4 974 59.8
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 1.2e-302 1043.5 1202 52.2
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 1.6e-286 989.9 1147 50.4
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 1.5e-276 956.8 1192 50.4
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 3.2e-266 922.5 1097 49.2
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.7e-249 866.3 799 62.0
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 6.7e-248 861.7 680 67.8
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 4.0e-245 852.4 946 51.9
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 1.9e-239 833.6 744 61.4
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 7.4e-231 805.1 1212 43.2
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.9e-224 782.7 670 63.6
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 5.3e-221 772.3 632 65.2
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 1.3e-219 767.7 1253 41.2
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 3.1e-213 746.5 585 69.9
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.9e-210 737.3 665 61.4
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 8.0e-201 705.3 1157 40.5
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 4.0e-200 703.0 614 62.9
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 6.0e-180 636.0 1105 38.5
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 2.8e-177 627.1 582 60.0
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 7.8e-164 582.4 518 61.8
Solyc06g042960.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 1.4e-144 518.5 455 62.4
Nitab4.5_0005137g0010 Nicotiana tabacum HOM05D004065 ORTHO05D004806 1.3e-142 511.9 454 63.0
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 8.1e-137 492.7 1459 29.3
Peaxi162Scf00658g00725 Petunia axillaris HOM05D004065 ORTHO05D004806 2.5e-133 481.1 425 62.8
Cpa.g.sc1.377 Carica papaya HOM05D004065 ORTHO05D004806 1.0e-123 449.1 387 65.9
QL08p059051 Quercus lobata HOM05D004065 ORTHO05D004806 4.1e-112 410.6 402 64.2
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 1.8e-107 395.2 260 80.4
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 1.3e-94 352.4 419 50.6
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 1.4e-91 342.4 306 58.8
Ah.16g107250 Amaranthus hybridus HOM05D004065 ORTHO05D004806 1.2e-90 339.3 342 56.7
Psat6g236080 Pisum sativum HOM05D004065 ORTHO05D004806 4.7e-84 317.4 313 57.2
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.0e-83 314.3 266 60.9
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.5e-82 312.4 242 73.6
FAN06G4849 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.3e-81 307.0 398 47.2
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-77 296.2 303 51.5
Nn8g40630 Nelumbo nucifera HOM05D004065 ORTHO05D004806 3.0e-62 245.0 211 61.6
Hma1.2p1_1137F.1_g260730 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 2.6e-58 231.9 202 62.9
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 8.1e-52 210.3 125 85.6
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 1.7e-49 202.6 182 58.8
Hma1.2p1_0067F.1_g037070 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 3.1e-43 181.8 159 60.4
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.0e-43 181.4 211 48.3
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.6e-42 178.7 209 48.3
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 9.9e-42 176.8 166 62.7
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-41 175.6 204 49.0
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.9e-41 174.5 208 47.6
FAN01G0794 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-35 156.4 172 52.3
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.8e-33 148.3 134 52.2
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 8.4e-33 147.1 127 66.1
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 9.3e-32 143.7 131 51.9
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 4.6e-31 141.4 150 47.3
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 3.0e-30 138.7 130 51.5
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 8.1e-28 130.6 118 55.1
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.7e-23 115.5 129 50.4
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.9e-23 114.0 111 49.5
AagrBONN_evm.TU.Sc2ySwM_344.348 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.3e-21 108.6 227 34.4
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 1.8e-19 102.8 64 78.1
SHI22581 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-16 93.6 174 40.8
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 3.2e-16 92.0 57 82.5
Gohir.A12G155100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.1e-13 83.6 64 64.1
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 5.9e-10 71.2 253 26.1
BcaB04g18705 Brassica carinata HOM05D004065 ORTHO05D004806 1.3e-09 70.1 75 88.0
Nitab4.5_0001836g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.2e-09 69.3 101 48.5
Nitab4.5_0005137g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.2e-09 69.3 101 48.5
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 5.0e-09 68.2 123 33.3
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 2.5e-08 65.9 138 39.1
SHI22582 Sapria himalayana HOM05D004065 ORTHO05D004806 4.6e-07 61.6 83 41.0


User provided reference genes

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