Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 1.0e-76 290.0 149 100.0
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 1.6e-66 256.1 154 85.7
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 6.8e-65 250.8 153 86.3
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.7e-63 246.1 154 83.1
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.7e-63 246.1 154 83.1
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.7e-63 246.1 154 83.1
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 3.7e-63 245.0 153 81.7
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 2.7e-61 238.8 153 79.7
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 7.8e-61 237.3 153 79.7
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 8.6e-60 233.8 147 84.4
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 8.0e-58 227.3 151 78.1
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 8.9e-57 223.8 146 81.5
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.5e-56 223.0 154 77.3
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.5e-56 223.0 154 77.3
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 2.0e-56 222.6 151 76.8
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 2.9e-55 218.8 147 78.2
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.5e-51 205.7 146 75.3
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.1e-49 200.3 119 81.5
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.8e-49 199.5 119 84.0
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.0e-48 196.1 119 80.7
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.3e-47 193.4 139 72.7
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.7e-47 193.0 139 70.5
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.2e-47 192.6 119 79.8
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 1.9e-46 189.5 122 76.2
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 2.4e-46 189.1 119 78.2
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.6e-45 186.4 168 57.7
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 3.7e-39 165.2 119 64.7
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 3.7e-39 165.2 120 65.0
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 8.3e-39 164.1 131 61.1
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 8.3e-39 164.1 131 61.1
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.9e-38 162.9 119 64.7
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.9e-38 162.9 119 64.7
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 4.1e-38 161.8 120 64.2
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 7.1e-38 161.0 119 63.0
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 9.2e-38 160.6 119 63.9
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 9.2e-38 160.6 119 63.9
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 9.2e-38 160.6 120 62.5
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 1.2e-37 160.2 126 59.5
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 1.2e-37 160.2 120 62.5
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.2e-37 160.2 119 63.9
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 1.2e-37 160.2 119 64.7
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.6e-37 159.8 129 58.1
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.6e-37 159.8 126 58.7
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 2.1e-37 159.5 119 64.7
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 2.7e-37 159.1 119 61.3
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 2.7e-37 159.1 119 62.2
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.7e-37 159.1 120 63.3
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 3.5e-37 158.7 119 68.1
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 3.5e-37 158.7 119 63.9
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 3.5e-37 158.7 119 63.9
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 4.6e-37 158.3 119 63.0
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 4.6e-37 158.3 119 63.0
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 6.0e-37 157.9 119 61.3
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 6.0e-37 157.9 119 62.2
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 6.0e-37 157.9 132 60.6
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.8e-37 157.5 119 62.2
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 1.0e-36 157.1 119 61.3
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 1.3e-36 156.8 120 60.8
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 1.3e-36 156.8 119 61.3
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.7e-36 156.4 132 58.3
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 2.3e-36 156.0 119 62.2
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 2.3e-36 156.0 119 60.5
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 3.0e-36 155.6 119 62.2
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 3.0e-36 155.6 117 62.4
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 3.0e-36 155.6 119 64.7
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.9e-36 155.2 122 59.0
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 3.9e-36 155.2 119 62.2
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 5.1e-36 154.8 119 63.9
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 5.1e-36 154.8 119 61.3
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 6.6e-36 154.5 119 60.5
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 8.6e-36 154.1 119 59.7
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 8.6e-36 154.1 119 61.3
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 8.6e-36 154.1 119 60.5
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.1e-35 153.7 119 60.5
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.5e-35 153.3 119 62.2
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 1.5e-35 153.3 119 62.2
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.5e-35 153.3 119 62.2
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.9e-35 152.9 119 60.5
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.9e-35 152.9 119 61.3
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 2.5e-35 152.5 119 59.7
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 2.5e-35 152.5 120 60.0
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 2.5e-35 152.5 119 62.2
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 2.5e-35 152.5 119 62.2
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 3.3e-35 152.1 121 61.2
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 3.3e-35 152.1 120 60.0
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 3.3e-35 152.1 119 59.7
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 3.3e-35 152.1 117 58.1
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 4.3e-35 151.8 119 61.3
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 5.6e-35 151.4 119 62.2
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 7.3e-35 151.0 120 58.3
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 1.2e-34 150.2 123 59.3
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.2e-34 150.2 119 60.5
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.2e-34 150.2 119 59.7
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.6e-34 149.8 119 60.5
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.6e-34 149.8 119 59.7
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.1e-34 149.4 119 58.8
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 2.1e-34 149.4 119 58.8
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.1e-34 149.4 119 59.7
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 2.8e-34 149.1 120 59.2
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 2.8e-34 149.1 119 59.7
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 3.6e-34 148.7 120 57.5
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 3.6e-34 148.7 119 59.7
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 3.6e-34 148.7 119 59.7
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 3.6e-34 148.7 119 59.7
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 4.7e-34 148.3 119 57.1
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 4.7e-34 148.3 119 60.5
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 6.2e-34 147.9 119 59.7
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 6.2e-34 147.9 122 56.6
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 6.2e-34 147.9 119 58.8
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 6.2e-34 147.9 125 56.0
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 6.2e-34 147.9 119 60.5
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 8.1e-34 147.5 119 56.3
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.1e-33 147.1 120 56.7
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.4e-33 146.7 119 58.8
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.4e-33 146.7 119 58.8
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.8e-33 146.4 119 60.5
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 1.8e-33 146.4 120 55.8
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.8e-33 146.4 117 59.0
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 2.4e-33 146.0 119 59.7
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 2.4e-33 146.0 119 60.5
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 3.1e-33 145.6 120 58.3
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.2e-33 144.8 119 59.7
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 6.8e-33 144.4 119 59.7
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 6.8e-33 144.4 119 56.3
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 8.9e-33 144.1 119 57.1
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 8.9e-33 144.1 119 58.0
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 8.9e-33 144.1 119 60.5
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 2.0e-32 142.9 119 57.1
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 3.4e-32 142.1 121 58.7
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 4.4e-32 141.7 140 52.9
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 7.6e-32 141.0 119 57.1
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.3e-31 140.2 120 55.8
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 6.4e-31 137.9 119 54.6
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 8.4e-31 137.5 115 58.3
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.1e-30 137.1 122 54.1
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.1e-30 137.1 139 49.6
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 1.1e-30 137.1 119 54.6
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.4e-30 136.0 98 63.3
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.4e-30 134.8 103 60.2
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 5.4e-30 134.8 119 52.9
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 7.1e-30 134.4 136 49.3
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 3.5e-29 132.1 120 54.2
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 4.6e-29 131.7 118 54.2
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.0e-28 130.6 103 60.2
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.3e-28 130.2 110 56.4
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.7e-28 129.8 120 56.7
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.7e-28 129.8 119 53.8
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 3.0e-28 129.0 103 59.2
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.9e-27 126.3 126 48.4
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 5.6e-27 124.8 120 50.0
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 2.1e-26 122.9 130 49.2
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.6e-26 122.1 109 55.0
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.2e-24 117.1 106 52.8
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.2e-24 117.1 117 48.7
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 2.6e-24 115.9 110 52.7
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 3.4e-24 115.5 119 50.4
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 5.8e-24 114.8 135 48.1
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 1.7e-20 103.2 82 62.2
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 3.6e-18 95.5 66 71.2
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 7.6e-16 87.8 56 64.3
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 4.9e-15 85.1 65 53.8
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.4e-14 83.6 53 66.0
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 1.9e-14 83.2 112 35.7
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 3.2e-14 82.4 65 60.0
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 7.1e-14 81.3 56 62.5
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 6.0e-13 78.2 70 54.3
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.5e-11 72.8 52 61.5
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.6e-10 70.1 61 59.0
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.6e-10 70.1 61 59.0
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.1e-10 69.7 48 62.5
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 4.8e-10 68.6 95 38.9
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.1e-09 67.4 82 47.6
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 1.2e-08 63.9 62 56.5
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 4.5e-08 62.0 62 53.2
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 5.8e-08 61.6 62 51.6
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.3e-07 60.5 61 52.5
CARHR086300 Cardamine hirsuta HOM05D003887 ORTHO05D004523 4.9e-07 58.5 54 57.4
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 3.2e-06 55.8 47 57.4


User provided reference genes

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