Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 6.2e-174 614.0 301 100.0
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 1.2e-145 520.0 301 84.7
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 5.6e-143 511.1 301 84.4
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 1.6e-142 509.6 301 83.7
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 1.6e-142 509.6 301 83.7
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 4.9e-139 498.0 297 82.5
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 3.2e-138 495.4 301 81.1
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 1.2e-137 493.4 301 80.4
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 1.8e-136 489.6 291 84.5
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 4.0e-133 478.4 301 80.7
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.2e-131 472.6 276 82.2
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.2e-124 450.3 298 77.9
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.2e-118 429.5 272 76.5
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 4.5e-116 421.8 277 72.9
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 6.9e-109 397.9 277 68.6
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.3e-104 382.9 225 81.8
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.0e-99 367.5 287 68.3
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.1e-98 364.0 294 67.7
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 3.9e-96 355.5 294 61.2
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 6.7e-96 354.8 292 59.9
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 1.1e-95 354.0 318 55.3
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 9.7e-95 350.9 296 59.8
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 9.7e-95 350.9 295 60.0
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 3.7e-94 349.0 291 59.8
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 3.1e-93 345.9 294 57.8
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 3.1e-93 345.9 299 58.2
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 4.1e-93 345.5 294 57.8
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.2e-92 344.0 294 57.5
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.2e-92 344.0 295 57.3
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 1.6e-92 343.6 293 58.4
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 1.6e-92 343.6 285 58.9
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 1.6e-92 343.6 289 57.1
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 3.5e-92 342.4 285 59.3
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 4.5e-92 342.0 283 59.0
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 4.5e-92 342.0 284 60.9
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 1.1e-90 337.4 291 63.9
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.2e-90 335.9 294 57.8
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 4.2e-90 335.5 284 57.0
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 4.2e-90 335.5 284 57.0
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 7.2e-90 334.7 290 57.2
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 1.2e-89 334.0 309 55.3
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 2.1e-89 333.2 287 58.5
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 2.7e-89 332.8 285 55.8
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 3.6e-89 332.4 276 58.7
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 1.8e-88 330.1 293 56.0
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 1.8e-88 330.1 294 55.1
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 4.0e-88 328.9 299 55.9
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 6.7e-88 328.2 293 56.7
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 2.0e-87 326.6 284 57.4
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 2.6e-87 326.2 276 58.0
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 2.6e-87 326.2 293 54.9
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 1.7e-86 323.6 296 54.7
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 1.7e-86 323.6 287 54.4
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 2.8e-86 322.8 294 54.8
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.4e-85 320.5 294 54.1
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 3.1e-85 319.3 285 55.8
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 4.1e-85 318.9 288 56.6
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 5.3e-85 318.5 191 78.5
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 5.3e-85 318.5 286 55.2
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 1.2e-84 317.4 296 53.7
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.6e-84 317.0 303 53.8
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 2.0e-84 316.6 304 53.3
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 2.7e-84 316.2 288 55.2
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 2.7e-84 316.2 280 55.7
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 7.7e-84 314.7 275 56.4
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 7.7e-84 314.7 298 54.0
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 1.0e-83 314.3 281 56.6
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.7e-83 313.5 283 55.5
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.7e-83 313.5 283 55.8
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.2e-83 313.2 283 55.5
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 5.0e-83 312.0 280 56.1
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 6.5e-83 311.6 280 55.7
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-82 310.8 281 56.2
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 1.5e-82 310.5 294 53.4
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 1.5e-82 310.5 294 53.4
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 1.5e-82 310.5 300 52.0
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 1.9e-82 310.1 271 57.2
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 3.2e-82 309.3 286 54.9
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 4.2e-82 308.9 288 52.8
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 5.5e-82 308.5 288 52.4
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 2.7e-81 306.2 289 53.3
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 3.6e-81 305.8 290 59.7
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 3.6e-81 305.8 313 50.5
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 5.2e-80 302.0 289 51.6
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 5.2e-80 302.0 286 53.1
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 2.6e-79 299.7 286 54.9
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 4.4e-79 298.9 287 53.0
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 7.5e-79 298.1 293 53.6
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 7.5e-79 298.1 351 47.3
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 2.2e-78 296.6 296 53.4
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 8.3e-78 294.7 292 57.2
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.7e-76 288.1 246 57.3
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 1.0e-75 287.7 213 65.7
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 3.8e-75 285.8 291 49.5
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 4.0e-72 275.8 284 49.3
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 1.5e-71 273.9 294 49.3
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 1.5e-71 273.9 292 48.3
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 1.8e-69 266.9 242 55.8
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 2.4e-69 266.5 282 47.5
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 7.0e-69 265.0 281 50.2
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 3.5e-68 262.7 295 47.8
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 5.9e-68 261.9 291 48.5
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 5.9e-68 261.9 269 49.8
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 3.8e-67 259.2 263 48.7
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.5e-66 257.3 289 48.4
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 2.1e-65 253.4 288 46.5
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 3.6e-65 252.7 187 69.5
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 8.0e-65 251.5 251 51.8
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 2.2e-62 243.4 213 55.4
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 7.0e-61 238.4 211 54.5
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 6.0e-60 235.3 216 53.7
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 7.8e-60 235.0 213 53.5
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 5.0e-59 232.3 286 46.2
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 8.6e-59 231.5 312 42.6
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 5.2e-56 222.2 270 43.3
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 3.5e-52 209.5 269 49.4
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 1.0e-51 208.0 224 50.4
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 6.2e-49 198.7 308 38.6
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 1.4e-45 187.6 300 36.7
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 2.4e-45 186.8 281 37.7
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 4.1e-45 186.0 173 53.8
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 1.6e-44 184.1 212 45.3
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 6.0e-44 182.2 303 37.0
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 2.3e-43 180.3 213 48.8
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.5e-42 177.6 300 36.3
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 1.6e-41 174.1 136 59.6
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 9.9e-39 164.9 163 52.8
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 9.9e-39 164.9 131 60.3
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 2.9e-38 163.3 168 47.6
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 3.8e-38 162.9 99 77.8
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 4.9e-38 162.5 107 74.8
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 1.1e-32 144.8 163 49.1
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 3.1e-32 143.3 174 46.6
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 1.0e-27 128.3 106 59.4
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 5.1e-27 125.9 106 59.4
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 1.6e-25 120.9 118 50.0
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 2.6e-23 113.6 249 34.1
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 1.3e-22 111.3 61 88.5
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 1.3e-22 111.3 61 88.5
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 4.9e-22 109.4 156 37.8
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 4.3e-18 96.3 83 60.2
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 2.8e-17 93.6 100 49.0
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 3.4e-15 86.7 344 25.3
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.1e-13 81.6 61 67.2
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 7.1e-13 79.0 58 62.1
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 4.6e-12 76.3 106 42.5
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 3.9e-11 73.2 209 28.2
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 4.0e-08 63.2 45 66.7
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.3e-06 58.2 218 25.7
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 2.2e-06 57.4 160 30.0
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 3.8e-06 56.6 143 29.4


User provided reference genes

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