Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g09210 Schrenkiella parvula HOM05D012263 ORTHO05D000900 2.0e-184 649.0 353 100.0
BcaC05g29405 Brassica carinata HOM05D012263 ORTHO05D000900 1.1e-92 344.4 350 62.3
C05p57200 Brassica napus HOM05D012263 ORTHO05D000900 1.1e-92 344.4 350 62.3
BolC5t34381H Brassica oleracea HOM05D012263 ORTHO05D000900 1.1e-92 344.4 350 62.3
AL3G22400 Arabidopsis lyrata HOM05D012263 ORTHO05D000900 5.3e-92 342.0 351 61.8
Thhalv10021043m.g Eutrema salsugineum HOM05D012263 ORTHO05D000900 1.7e-90 337.0 353 59.8
Carub.0003s1013 Capsella rubella HOM05D012263 ORTHO05D000900 7.7e-83 311.6 354 57.3
AT3G10880 Arabidopsis thaliana HOM05D012263 ORTHO05D000900 7.2e-81 305.1 334 59.0
A05p38350 Brassica napus HOM05D012263 ORTHO05D000900 4.1e-76 289.3 350 56.0
BraA05t22625Z Brassica rapa HOM05D012263 ORTHO05D000900 5.7e-70 268.9 350 53.7
BcaB06g25654 Brassica carinata HOM05D012263 ORTHO05D000900 6.5e-66 255.4 358 54.7
BcaB06g25659 Brassica carinata HOM05D012263 ORTHO05D000900 1.4e-55 221.1 358 50.0
CARHR085470 Cardamine hirsuta HOM05D012263 ORTHO05D000900 6.0e-35 152.5 143 61.5
Sp6g37650 Schrenkiella parvula HOM05D000592 ORTHO05D000900 8.9e-31 138.7 388 34.3
CARHR208080 Cardamine hirsuta HOM05D000592 ORTHO05D000900 5.4e-28 129.4 446 31.4
THA.LOC104816506 Tarenaya hassleriana HOM05D000592 ORTHO05D000900 1.0e-26 125.2 544 28.1
BolC3t12808H Brassica oleracea HOM05D000592 ORTHO05D000900 7.3e-17 92.4 225 34.7
Thhalv10013570m.g Eutrema salsugineum HOM05D000592 ORTHO05D000900 1.2e-16 91.7 473 27.7
Carub.0006s0411 Capsella rubella HOM05D000592 ORTHO05D000900 2.8e-16 90.5 459 26.8
A03p02220 Brassica napus HOM05D000592 ORTHO05D000900 4.7e-16 89.7 100 51.0
BraA03t09586Z Brassica rapa HOM05D000592 ORTHO05D000900 1.8e-15 87.8 100 50.0
Hma1.2p1_0264F.1_g105920 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 2.4e-15 87.4 285 29.1
Hma1.2p1_1805F.1_g303110 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 2.4e-15 87.4 285 29.1
Lj1g0022472 Lotus japonicus HOM05D000592 ORTHO05D000900 2.6e-14 84.0 185 36.2
Aa31LG11G6030 Aethionema arabicum HOM05D000592 ORTHO05D000900 7.6e-14 82.4 457 28.2
AL6G15020 Arabidopsis lyrata HOM05D000592 ORTHO05D000900 2.2e-13 80.9 413 26.6
Atru.chr12.190 Acer truncatum HOM05D000592 ORTHO05D000900 1.1e-12 78.6 199 31.7
GSVIVG01032654001 Vitis vinifera HOM05D000592 ORTHO05D000900 1.1e-12 78.6 218 32.6
PSO017G4207 Papaver somniferum HOM05D000592 ORTHO05D000900 5.4e-12 76.3 240 31.7
Cc02_g05180 Coffea canephora HOM05D000592 ORTHO05D000900 2.1e-11 74.3 268 30.6
Dinv21860 Davidia involucrata HOM05D000592 ORTHO05D000900 2.1e-11 74.3 216 30.6
Hund13435 Selenicereus undatus HOM05D000592 ORTHO05D000900 2.1e-11 74.3 213 32.4
C03p02560 Brassica napus HOM05D000592 ORTHO05D000900 2.7e-11 73.9 220 30.9
Gohir.D05G107700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 2.7e-11 73.9 207 34.8
Ciclev10000625m.g Citrus clementina HOM05D000592 ORTHO05D000900 3.5e-11 73.6 183 32.8
Solyc03g095600.1 Solanum lycopersicum HOM05D000592 ORTHO05D000900 4.6e-11 73.2 206 33.0
PGSC0003DMG400022957 Solanum tuberosum HOM05D000592 ORTHO05D000900 6.0e-11 72.8 212 31.1
Gohir.A05G107500 Gossypium hirsutum HOM05D000592 ORTHO05D000900 7.8e-11 72.4 185 36.8
vmacro06905 Vaccinium macrocarpon HOM05D000592 ORTHO05D000900 7.8e-11 72.4 202 32.2
CDE12G0881 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 1.0e-10 72.0 388 27.1
Manes.02G210800 Manihot esculenta HOM05D000592 ORTHO05D000900 1.0e-10 72.0 193 27.5
Sopen03g025550 Solanum pennellii HOM05D000592 ORTHO05D000900 1.0e-10 72.0 214 32.2
AT5G05180 Arabidopsis thaliana HOM05D000592 ORTHO05D000900 1.7e-10 71.2 451 25.3
PSO170G4625 Papaver somniferum HOM05D000592 ORTHO05D000900 2.3e-10 70.9 212 30.2
BcaB01g05720 Brassica carinata HOM05D000592 ORTHO05D000900 3.0e-10 70.5 78 50.0
Gorai.009G111800 Gossypium raimondii HOM05D000592 ORTHO05D000900 3.9e-10 70.1 207 33.8
Lj6g0013783 Lotus japonicus HOM05D000592 ORTHO05D000900 3.9e-10 70.1 197 32.5
BcaC06g32227 Brassica carinata HOM05D000592 ORTHO05D000900 5.1e-10 69.7 211 30.8
CiPaw.13G062900 Carya illinoinensis HOM05D000592 ORTHO05D000900 5.1e-10 69.7 157 36.3
CSS0047619 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D000900 6.6e-10 69.3 188 35.1
MD00G1192700 Malus domestica HOM05D000592 ORTHO05D000900 6.6e-10 69.3 231 29.4
CSS0036597 Camellia sinensis var. sinensis HOM05D000592 ORTHO05D000900 8.7e-10 68.9 98 42.9
Prupe.2G266000 Prunus persica HOM05D000592 ORTHO05D000900 8.7e-10 68.9 231 29.0
TAR633G2344 Trochodendron aralioides HOM05D000592 ORTHO05D000900 1.1e-09 68.6 214 30.8
unitig_26.g10224 Utricularia gibba HOM05D000592 ORTHO05D000900 1.1e-09 68.6 188 28.7
MD07G1236600 Malus domestica HOM05D000592 ORTHO05D000900 1.5e-09 68.2 233 30.9
Peaxi162Scf00073g02222 Petunia axillaris HOM05D000592 ORTHO05D000900 1.5e-09 68.2 89 46.1
Ca_25477_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 2.5e-09 67.4 201 30.8
Ca_29869_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 2.5e-09 67.4 201 30.8
Nitab4.5_0005979g0020 Nicotiana tabacum HOM05D000592 ORTHO05D000900 2.5e-09 67.4 123 39.0
PSO302G0198 Papaver somniferum HOM05D031600 ORTHO05D000900 2.5e-09 67.4 216 31.0
MD01G1170000 Malus domestica HOM05D000592 ORTHO05D000900 3.3e-09 67.0 187 30.5
FAN06G2529 Fragaria x ananassa HOM05D000592 ORTHO05D000900 4.3e-09 66.6 223 28.3
PSO017G2726 Papaver somniferum HOM05D000592 ORTHO05D000900 4.3e-09 66.6 100 39.0
Actinidia11628 Actinidia chinensis HOM05D000592 ORTHO05D000900 5.6e-09 66.2 150 36.0
FvH4_7g26161 Fragaria vesca HOM05D000592 ORTHO05D000900 5.6e-09 66.2 223 28.3
MD00G1193100 Malus domestica HOM05D000592 ORTHO05D000900 5.6e-09 66.2 98 39.8
Medtr8g032930 Medicago truncatula HOM05D009393 ORTHO05D012382 5.6e-09 66.2 192 30.7
QL08p065113 Quercus lobata HOM05D000592 ORTHO05D000900 5.6e-09 66.2 229 29.7
Solyc08g077680.3 Solanum lycopersicum HOM05D000592 ORTHO05D000900 5.6e-09 66.2 188 29.3
PGSC0003DMG400001834 Solanum tuberosum HOM05D000592 ORTHO05D000900 5.6e-09 66.2 98 37.8
Hma1.2p1_0161F.1_g072140 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 7.3e-09 65.9 169 34.9
Lj1P969T46 Lonicera japonica HOM05D000592 ORTHO05D000900 7.3e-09 65.9 88 46.6
Medtr6g082800 Medicago truncatula HOM05D000592 ORTHO05D000900 7.3e-09 65.9 203 30.5
Nn5g26826 Nelumbo nucifera HOM05D000592 ORTHO05D000900 7.3e-09 65.9 98 41.8
Sopen08g026190 Solanum pennellii HOM05D000592 ORTHO05D000900 7.3e-09 65.9 150 32.7
CAN.G1229.1 Capsicum annuum HOM05D000592 ORTHO05D000900 9.6e-09 65.5 213 30.0
ClCG11G005550 Citrullus lanatus HOM05D000592 ORTHO05D000900 9.6e-09 65.5 191 28.8
FAN01G3120 Fragaria x ananassa HOM05D000592 ORTHO05D000900 9.6e-09 65.5 223 27.8
MD07G1236900 Malus domestica HOM05D000592 ORTHO05D000900 9.6e-09 65.5 234 30.8
Os05g0168800 Oryza sativa ssp. japonica HOM05D000592 ORTHO05D000900 9.6e-09 65.5 126 33.3
Rhsim03G0153900 Rhododendron simsii HOM05D000592 ORTHO05D000900 9.6e-09 65.5 86 44.2
vmacro02870 Vaccinium macrocarpon HOM05D000592 ORTHO05D000900 9.6e-09 65.5 164 32.9
Zm00001eb345890 Zea mays HOM05D000592 ORTHO05D000900 9.6e-09 65.5 132 33.3
BcaNung05614 Brassica carinata HOM05D012263 ORTHO05D000900 1.2e-08 65.1 46 69.6
Cpa.g.sc19.38 Carica papaya HOM05D000592 ORTHO05D000900 1.2e-08 65.1 193 32.1
ECA248G1606 Erigeron canadensis HOM05D000592 ORTHO05D000900 1.2e-08 65.1 131 31.3
Manes.07G141800 Manihot esculenta HOM05D000592 ORTHO05D000900 1.2e-08 65.1 199 31.2
Rhsim13G0058700 Rhododendron simsii HOM05D000592 ORTHO05D000900 1.2e-08 65.1 189 31.7
MELO3C020482.2 Cucumis melo HOM05D000592 ORTHO05D000900 1.6e-08 64.7 167 35.3
Lsat_1_v5_gn_2_126640 Lactuca sativa HOM05D016672 ORTHO05D000900 1.6e-08 64.7 135 34.8
Manes.10G003500 Manihot esculenta HOM05D000592 ORTHO05D000900 1.6e-08 64.7 185 31.4
Zm00001eb281940 Zea mays HOM05D000592 ORTHO05D000900 1.6e-08 64.7 160 32.5
HanXRQChr07g0204871 Helianthus annuus HOM05D016672 ORTHO05D000900 2.1e-08 64.3 199 31.2
Sc10g0003080 Simmondsia chinensis HOM05D000592 ORTHO05D000900 2.1e-08 64.3 157 35.0
TPR.G24810 Trifolium pratense HOM05D009393 ORTHO05D000900 2.1e-08 64.3 203 29.6
Gorai.013G008700 Gossypium raimondii HOM05D000592 ORTHO05D000900 2.8e-08 63.9 131 34.4
Gorai.013G009500 Gossypium raimondii HOM05D000592 ORTHO05D000900 2.8e-08 63.9 178 32.0
Sabra19G0075300 Salix brachista HOM05D000592 ORTHO05D000900 2.8e-08 63.9 217 28.6
Gohir.D13G008266 Gossypium hirsutum HOM05D000592 ORTHO05D000900 3.6e-08 63.5 101 38.6
Gorai.013G008900 Gossypium raimondii HOM05D000125 ORTHO05D000900 3.6e-08 63.5 144 34.0
TPR.G13969 Trifolium pratense HOM05D009393 ORTHO05D012382 3.6e-08 63.5 195 29.7
arahy.Tifrunner.gnm1.ann1.18PYAU Arachis hypogaea HOM05D000592 ORTHO05D000900 4.7e-08 63.2 221 27.1
Glyma.04G223600 Glycine max HOM05D009393 ORTHO05D000900 4.7e-08 63.2 83 43.4
Cpa.g.sc2.288 Carica papaya HOM05D000592 ORTHO05D000900 6.2e-08 62.8 182 30.8
Phvul.009G042500 Phaseolus vulgaris HOM05D009393 ORTHO05D000900 6.2e-08 62.8 92 42.4
Sabra19G0127600 Salix brachista HOM05D000592 ORTHO05D000900 6.2e-08 62.8 165 30.9
Potri.019G131000 Populus trichocarpa HOM05D000592 ORTHO05D000900 8.1e-08 62.4 203 28.1
RcHm_v2.0_Chr1g0372621 Rosa chinensis HOM05D000592 ORTHO05D000900 8.1e-08 62.4 254 29.1
EL10Ac2g02670 Beta vulgaris HOM05D000592 ORTHO05D000900 1.1e-07 62.0 184 33.7
Ca_27035_v3 Cicer arietinum L. HOM05D000592 ORTHO05D000900 1.8e-07 61.2 186 30.6
FAN10G3566 Fragaria x ananassa HOM05D000592 ORTHO05D000900 1.8e-07 61.2 223 27.8
Gohir.D13G008700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 1.8e-07 61.2 96 39.6
MD07G1236000 Malus domestica HOM05D000592 ORTHO05D000900 1.8e-07 61.2 158 31.0
ECA238G3344 Erigeron canadensis HOM05D016672 ORTHO05D000900 2.4e-07 60.8 205 30.7
ECA247G3974 Erigeron canadensis HOM05D000592 ORTHO05D000900 2.4e-07 60.8 221 27.6
PSO732G0509 Papaver somniferum HOM05D031600 ORTHO05D000900 2.4e-07 60.8 93 41.9
Ah.12g064480 Amaranthus hybridus HOM05D000592 ORTHO05D000900 3.1e-07 60.5 155 29.7
Ciclev10031096m.g Citrus clementina HOM05D000592 ORTHO05D000900 3.1e-07 60.5 219 27.4
MELO3C022108.2 Cucumis melo HOM05D000592 ORTHO05D000900 3.1e-07 60.5 185 28.1
Dinv28735 Davidia involucrata HOM05D000592 ORTHO05D000900 3.1e-07 60.5 229 27.1
SGA_v2.0_scaffold20G09285 Striga asiatica HOM05D000592 ORTHO05D000900 3.1e-07 60.5 156 30.8
Lalb_Chr23g0272131 Lupinus albus HOM05D000592 ORTHO05D000900 4.0e-07 60.1 90 41.1
Medtr3g093770 Medicago truncatula HOM05D009393 ORTHO05D000900 4.0e-07 60.1 147 32.0
Psat1g034400 Pisum sativum HOM05D009393 ORTHO05D000900 5.2e-07 59.7 200 30.5
Psat5g069440 Pisum sativum HOM05D009393 ORTHO05D012382 5.2e-07 59.7 166 31.3
Zm00001eb123210 Zea mays HOM05D000592 ORTHO05D000900 5.2e-07 59.7 138 31.2
Phvul.008G246300 Phaseolus vulgaris HOM05D000592 ORTHO05D000900 6.9e-07 59.3 146 31.5
Hund28036 Selenicereus undatus HOM05D000592 ORTHO05D000900 6.9e-07 59.3 234 28.6
Hund28038 Selenicereus undatus HOM05D000592 ORTHO05D000900 6.9e-07 59.3 234 28.6
TWI79G0473 Tripterygium wilfordii HOM05D000592 ORTHO05D000900 6.9e-07 59.3 90 38.9
Dinv12285 Davidia involucrata HOM05D000592 ORTHO05D000900 9.0e-07 58.9 184 32.1
Glyma.02G236600 Glycine max HOM05D000592 ORTHO05D000900 9.0e-07 58.9 176 29.5
Gohir.D03G139900 Gossypium hirsutum HOM05D000592 ORTHO05D000900 9.0e-07 58.9 143 33.6
Gohir.D13G008332 Gossypium hirsutum HOM05D000125 ORTHO05D000900 9.0e-07 58.9 144 32.6
Hma1.2p1_3788F.1_g337620 Hydrangea macrophylla HOM05D000592 ORTHO05D000900 9.0e-07 58.9 174 38.5
Glyma.06G141300 Glycine max HOM05D009393 ORTHO05D000900 1.2e-06 58.5 76 39.5
PGR102G2955 Punica granatum HOM05D000592 ORTHO05D000900 1.2e-06 58.5 151 32.5
SHI04236 Sapria himalayana HOM05D000592 ORTHO05D000900 1.2e-06 58.5 242 26.9
TPR.G13962 Trifolium pratense HOM05D009393 ORTHO05D012382 1.5e-06 58.2 167 29.9
TWI53G1016 Tripterygium wilfordii HOM05D000592 ORTHO05D000900 1.5e-06 58.2 244 27.5
Actinidia13636 Actinidia chinensis HOM05D000592 ORTHO05D000900 2.0e-06 57.8 74 43.2
Gorai.003G146700 Gossypium raimondii HOM05D000592 ORTHO05D000900 2.0e-06 57.8 186 30.6
SGA_v2.0_scaffold160G37742 Striga asiatica HOM05D000592 ORTHO05D000900 2.0e-06 57.8 213 29.1
VMungo1309G1617 Vigna mungo HOM05D000592 ORTHO05D000900 2.0e-06 57.8 187 27.8
CANSAT56G2503 Cannabis sativa HOM05D000592 ORTHO05D000900 2.6e-06 57.4 218 29.4
Cc00_g18900 Coffea canephora HOM05D000592 ORTHO05D000900 2.6e-06 57.4 183 31.7
COL.COLO4_19478 Corchorus olitorius HOM05D000592 ORTHO05D000900 2.6e-06 57.4 178 29.8
Os01g0168100 Oryza sativa ssp. japonica HOM05D000592 ORTHO05D000900 2.6e-06 57.4 98 34.7
Thecc.10G185300 Theobroma cacao HOM05D000592 ORTHO05D000900 2.6e-06 57.4 83 43.4
Migut.F01230 Erythranthe guttata HOM05D000592 ORTHO05D000900 3.4e-06 57.0 196 28.1
FAN25G3419 Fragaria x ananassa HOM05D000592 ORTHO05D000900 3.4e-06 57.0 145 32.4
PSO302G0277 Papaver somniferum HOM05D031600 ORTHO05D000900 3.4e-06 57.0 299 25.8
Manes.18G139900 Manihot esculenta HOM05D000592 ORTHO05D000900 4.4e-06 56.6 190 28.9
Nitab4.5_0000171g0300 Nicotiana tabacum HOM05D000592 ORTHO05D000900 4.4e-06 56.6 58 53.4
Gohir.A03G028700 Gossypium hirsutum HOM05D000592 ORTHO05D000900 5.8e-06 56.2 166 31.3
Sc12g0000060 Simmondsia chinensis HOM05D000592 ORTHO05D000900 5.8e-06 56.2 344 24.7
Sc12g0000070 Simmondsia chinensis HOM05D000592 ORTHO05D000900 5.8e-06 56.2 344 24.7
CDE07G1883 Ceratophyllum demersum HOM05D000592 ORTHO05D000900 7.6e-06 55.8 209 25.8
RcHm_v2.0_Chr5g0073401 Rosa chinensis HOM05D000592 ORTHO05D000900 9.9e-06 55.5 159 29.6
HPP92_001666 Vanilla planifolia HOM05D000592 ORTHO05D000900 9.9e-06 55.5 225 28.0


User provided reference genes

Program Settings