Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.1e-36 156.0 73 100.0
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 4.2e-36 154.1 73 98.6
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 4.2e-36 154.1 73 98.6
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 2.7e-35 151.4 73 95.9
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 3.6e-35 151.0 73 97.3
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 3.6e-35 151.0 73 97.3
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 3.6e-35 151.0 73 97.3
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 3.6e-35 151.0 73 97.3
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 1.4e-34 149.1 73 94.5
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 1.4e-34 149.1 73 94.5
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 1.8e-34 148.7 73 97.3
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 1.8e-34 148.7 73 93.2
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 4.0e-34 147.5 73 90.4
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 6.8e-34 146.7 73 93.2
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 3.4e-33 144.4 73 93.2
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 3.4e-33 144.4 73 87.7
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 5.7e-33 143.7 73 86.3
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 9.7e-33 142.9 73 91.8
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 1.3e-32 142.5 73 90.4
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 2.8e-32 141.4 73 91.8
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 2.8e-32 141.4 73 91.8
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 3.7e-32 141.0 73 90.4
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 4.8e-32 140.6 73 90.4
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 8.3e-32 139.8 73 89.0
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 8.3e-32 139.8 73 89.0
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 8.3e-32 139.8 73 89.0
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 8.3e-32 139.8 73 89.0
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 8.3e-32 139.8 73 89.0
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 1.1e-31 139.4 73 89.0
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 1.4e-31 139.0 73 89.0
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 3.1e-31 137.9 73 89.0
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 5.3e-31 137.1 73 87.7
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 2.0e-30 135.2 94 73.4
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 1.0e-29 132.9 73 80.8
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 1.3e-29 132.5 73 82.2
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.7e-29 132.1 73 82.2
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 3.8e-29 131.0 73 83.6
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 3.8e-29 131.0 73 83.6
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 5.0e-29 130.6 73 82.2
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 5.0e-29 130.6 73 79.5
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 5.0e-29 130.6 73 80.8
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 8.5e-29 129.8 73 82.2
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.1e-28 129.4 73 79.5
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 1.1e-28 129.4 73 78.1
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 1.5e-28 129.0 73 79.5
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 1.9e-28 128.6 73 80.8
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 2.5e-28 128.3 73 80.8
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 2.5e-28 128.3 73 79.5
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 4.2e-28 127.5 73 79.5
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 5.5e-28 127.1 73 79.5
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 5.5e-28 127.1 73 80.8
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 5.5e-28 127.1 73 80.8
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 9.4e-28 126.3 73 76.7
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 9.4e-28 126.3 73 79.5
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 1.2e-27 125.9 73 78.1
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 1.2e-27 125.9 73 76.7
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 1.2e-27 125.9 73 75.3
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 1.6e-27 125.6 73 75.3
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 1.6e-27 125.6 73 76.7
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 2.1e-27 125.2 73 74.0
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 3.6e-27 124.4 73 75.3
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 3.6e-27 124.4 73 78.1
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 3.6e-27 124.4 73 72.6
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 3.6e-27 124.4 73 75.3
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 4.7e-27 124.0 73 75.3
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 4.7e-27 124.0 70 80.0
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 6.1e-27 123.6 73 75.3
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 8.0e-27 123.2 73 74.0
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 1.4e-26 122.5 73 72.6
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 1.8e-26 122.1 71 74.6
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 2.3e-26 121.7 73 76.7
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 3.0e-26 121.3 73 72.6
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 3.0e-26 121.3 73 74.0
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 4.0e-26 120.9 73 74.0
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 4.0e-26 120.9 73 74.0
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 4.0e-26 120.9 73 72.6
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 4.0e-26 120.9 73 72.6
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 4.0e-26 120.9 73 71.2
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 4.0e-26 120.9 73 74.0
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 5.2e-26 120.6 73 75.3
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 6.8e-26 120.2 73 72.6
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 6.8e-26 120.2 73 74.0
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 6.8e-26 120.2 73 71.2
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 6.8e-26 120.2 73 76.7
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 8.8e-26 119.8 73 72.6
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 8.8e-26 119.8 73 72.6
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 1.2e-25 119.4 73 74.0
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 1.2e-25 119.4 72 73.6
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 1.2e-25 119.4 73 72.6
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 2.0e-25 118.6 73 72.6
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 2.6e-25 118.2 73 71.2
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 3.4e-25 117.9 73 69.9
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 4.4e-25 117.5 70 74.3
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 5.7e-25 117.1 70 78.6
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 7.5e-25 116.7 73 71.2
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 7.5e-25 116.7 73 71.2
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 7.5e-25 116.7 73 71.2
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 7.5e-25 116.7 73 72.6
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 9.8e-25 116.3 73 72.6
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 1.3e-24 115.9 73 71.2
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 1.3e-24 115.9 73 72.6
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 1.7e-24 115.5 73 68.5
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 2.2e-24 115.2 73 69.9
BcaB04g21171 Brassica carinata HOM05D004391 ORTHO05D005193 2.8e-24 114.8 52 98.1
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 2.8e-24 114.8 73 67.1
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 2.8e-24 114.8 73 68.5
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 3.7e-24 114.4 73 68.5
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 6.3e-24 113.6 73 68.5
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 6.3e-24 113.6 73 67.1
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 6.3e-24 113.6 73 67.1
Sed0004860 Sechium edule HOM05D004391 ORTHO05D005193 6.3e-24 113.6 73 69.9
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.1e-23 112.8 73 67.1
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.1e-23 112.8 73 67.1
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.1e-23 112.8 73 67.1
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.4e-23 112.5 56 89.3
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 1.8e-23 112.1 73 69.9
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 2.4e-23 111.7 73 68.5
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 2.4e-23 111.7 70 68.6
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 4.1e-23 110.9 73 69.9
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 5.4e-23 110.5 94 56.4
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 7.0e-23 110.2 71 67.6
Migut.D00804 Erythranthe guttata HOM05D004391 ORTHO05D005193 9.1e-23 109.8 73 67.1
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 9.1e-23 109.8 72 68.1
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 1.6e-22 109.0 73 67.1
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 2.0e-22 108.6 73 67.1
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 4.5e-22 107.5 73 64.4
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 4.5e-22 107.5 63 81.0
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 5.9e-22 107.1 73 64.4
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 7.7e-22 106.7 73 64.4
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 7.7e-22 106.7 56 85.7
CBR_g1035 Chara braunii HOM05D004391 ORTHO05D005193 1.0e-21 106.3 73 64.4
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 1.0e-21 106.3 56 87.5
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 3.8e-21 104.4 56 83.9
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 3.8e-21 104.4 73 64.4
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 8.6e-21 103.2 73 61.6
CsaV3_2G024700 Cucumis sativus L. HOM05D004391 ORTHO05D005193 1.5e-20 102.4 58 77.6
AagrBONN_evm.TU.Sc2ySwM_362.2485 Anthoceros agrestis HOM05D004391 ORTHO05D005193 1.9e-20 102.1 73 61.6
Potri.013G159700 Populus trichocarpa HOM05D004391 ORTHO05D005193 1.9e-20 102.1 56 80.4
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 2.5e-20 101.7 58 75.9
Pp3c7_21160 Physcomitrium patens HOM05D004391 ORTHO05D005193 4.2e-20 100.9 73 57.5
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 4.2e-20 100.9 56 78.6
VMungo0647G0523 Vigna mungo HOM05D004391 ORTHO05D005193 9.5e-20 99.8 56 78.6
Pp3c11_2590 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.2e-19 99.4 73 56.2
Pp3c1_1570 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.6e-19 99.0 73 56.2
BolC2t06197H Brassica oleracea HOM05D004391 ORTHO05D005193 2.1e-19 98.6 69 73.9
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 4.7e-19 97.4 103 49.5
SHI19278 Sapria himalayana HOM05D004391 ORTHO05D005193 6.8e-18 93.6 56 73.2
C02p02320 Brassica napus HOM05D004391 ORTHO05D005193 1.5e-17 92.4 66 72.7
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 4.4e-17 90.9 56 73.2
SGA_v2.0_scaffold122G33334 Striga asiatica HOM05D004391 ORTHO05D005193 4.4e-17 90.9 56 73.2
SGA_v2.0_scaffold129G34161 Striga asiatica HOM05D004391 ORTHO05D005193 5.4e-15 84.0 53 71.7
Lsat_1_v5_gn_9_13340 Lactuca sativa HOM05D004391 ORTHO05D005193 7.0e-15 83.6 52 73.1
Lsat_1_v5_gn_8_98921 Lactuca sativa HOM05D004391 ORTHO05D005193 2.0e-14 82.0 56 66.1
Lsat_1_v5_gn_8_98901 Lactuca sativa HOM05D004391 ORTHO05D005193 2.7e-14 81.6 52 73.1
Mapoly0022s0089 Marchantia polymorpha HOM05D004391 ORTHO05D005193 3.5e-14 81.3 65 49.2
BcaB05g21720 Brassica carinata HOM05D004391 ORTHO05D005193 1.7e-13 79.0 52 69.2
Mapoly0036s0032 Marchantia polymorpha HOM05D004391 ORTHO05D005193 8.6e-13 76.6 73 53.4
Pp3c13_7360 Physcomitrium patens HOM05D004391 ORTHO05D005193 8.6e-13 76.6 71 49.3
SEGI_31881 Sequoiadendron giganteum HOM05D004391 ORTHO05D005193 1.9e-12 75.5 54 51.9
SMO117G0077 Selaginella moellendorffii HOM05D004391 ORTHO05D005193 4.7e-11 70.9 66 51.5
Oeu007160.1 Olea europaea HOM05D004391 ORTHO05D005193 2.3e-10 68.6 55 60.0
DCAR_018583 Daucus carota HOM05D004391 ORTHO05D005193 4.0e-10 67.8 56 50.0
EL10Ac1g00726 Beta vulgaris HOM05D004391 ORTHO05D005193 4.4e-09 64.3 38 73.7
DCAR_023068 Daucus carota HOM05D004391 ORTHO05D005193 6.4e-08 60.5 74 43.2
PRCOL_00006067 Prasinoderma coloniale HOM05D004391 ORTHO05D005193 1.4e-07 59.3 73 37.0
MCO15G410 Micromonas commoda HOM05D004391 ORTHO05D005193 2.0e-06 55.5 73 37.0


User provided reference genes

Program Settings