Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.2e-238 828.2 460 100.0
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 7.6e-208 727.2 460 84.1
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 7.7e-192 674.1 461 79.0
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 1.1e-190 670.2 461 77.4
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.9e-190 669.5 461 78.7
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 2.5e-190 669.1 460 77.4
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.2e-190 668.3 461 78.5
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 4.6e-189 664.8 461 76.6
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.5e-187 659.8 457 77.2
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 2.6e-187 659.1 459 76.7
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.2e-186 656.0 456 78.1
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 7.0e-169 597.8 462 70.6
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.5e-150 537.0 463 62.9
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.5e-150 536.2 465 62.6
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 5.7e-147 525.0 446 63.0
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 7.5e-147 524.6 464 62.3
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.0e-144 516.5 459 62.7
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 5.9e-144 515.0 459 62.3
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 3.9e-143 512.3 464 60.3
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 3.7e-138 495.7 461 59.4
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 1.6e-136 490.3 461 58.8
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.3e-135 487.3 461 58.8
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.1e-134 484.2 461 59.2
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 3.0e-127 459.5 465 59.8
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 6.6e-127 458.4 460 61.7
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 6.4e-114 415.2 481 51.8
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 8.4e-114 414.8 422 59.2
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.7e-106 390.6 468 49.8
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 6.4e-106 388.7 475 49.9
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 6.0e-104 382.1 471 48.2
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 4.3e-102 375.9 471 47.1
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 7.4e-102 375.2 473 46.9
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 2.8e-101 373.2 479 48.0
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 4.8e-101 372.5 476 46.0
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 4.8e-101 372.5 479 45.9
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 8.1e-101 371.7 473 46.3
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 1.4e-100 370.9 477 46.8
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.8e-100 370.5 478 46.2
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 2.4e-100 370.2 480 46.7
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.1e-100 369.8 474 46.0
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.1e-100 369.8 474 46.0
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 5.3e-100 369.0 469 47.5
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 6.9e-100 368.6 478 46.0
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.2e-99 367.9 477 45.7
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 1.2e-99 367.9 468 47.0
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 3.4e-99 366.3 461 47.9
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 4.5e-99 365.9 475 46.1
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 5.8e-99 365.5 469 47.3
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 5.8e-99 365.5 463 45.6
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 1.7e-98 364.0 478 44.4
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 2.2e-98 363.6 474 47.3
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 6.4e-98 362.1 475 46.7
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 8.4e-98 361.7 476 44.3
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.1e-97 361.3 482 46.7
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 2.4e-97 360.1 476 44.1
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 9.3e-97 358.2 460 46.5
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 4.6e-96 355.9 476 45.6
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 1.0e-95 354.8 474 47.0
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 1.3e-95 354.4 477 46.1
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 2.3e-95 353.6 484 44.6
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.0e-95 353.2 475 46.7
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 5.1e-95 352.4 465 46.9
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.1e-94 351.3 469 47.1
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.5e-94 350.1 468 44.4
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 4.3e-94 349.4 469 45.2
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 7.4e-94 348.6 479 45.5
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 1.3e-93 347.8 475 46.7
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.6e-93 347.4 470 44.3
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 3.7e-93 346.3 474 45.6
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 4.8e-93 345.9 477 45.1
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 6.2e-93 345.5 472 43.6
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 6.2e-93 345.5 478 45.2
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.1e-92 344.7 474 46.0
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 1.8e-92 344.0 460 45.4
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 3.1e-92 343.2 473 44.4
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.9e-92 342.0 467 43.9
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 6.9e-92 342.0 460 45.2
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 6.9e-92 342.0 485 45.6
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 1.5e-91 340.9 473 44.8
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 2.6e-91 340.1 486 44.4
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 3.4e-91 339.7 467 43.5
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.0e-90 338.2 477 45.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.7e-90 337.4 467 43.3
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.7e-90 337.4 476 42.9
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 9.3e-89 331.6 472 44.7
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 2.7e-88 330.1 468 44.4
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 6.0e-88 328.9 480 44.0
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 6.0e-88 328.9 465 43.2
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.3e-85 321.2 471 44.2
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 8.2e-85 318.5 507 41.6
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 1.8e-84 317.4 477 42.8
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 1.8e-84 317.4 475 43.6
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.8e-84 317.4 440 46.1
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 6.9e-84 315.5 338 54.4
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 3.4e-83 313.2 467 42.8
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 5.9e-83 312.4 525 40.6
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 1.0e-82 311.6 475 43.4
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.5e-82 308.9 501 39.5
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 8.5e-82 308.5 489 41.1
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 1.9e-81 307.4 601 36.4
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 5.5e-81 305.8 487 40.7
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 4.6e-80 302.8 313 50.8
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 6.1e-80 302.4 414 44.2
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 1.0e-79 301.6 458 42.4
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 3.9e-79 299.7 392 44.1
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 5.1e-79 299.3 473 41.4
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 8.7e-79 298.5 479 40.5
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 1.1e-78 298.1 496 37.9
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.5e-78 297.7 439 43.3
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 7.4e-78 295.4 307 52.4
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.3e-77 294.7 455 40.7
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.8e-77 293.5 466 42.7
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 2.8e-77 293.5 392 43.4
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 1.8e-76 290.8 392 44.9
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 2.4e-76 290.4 467 40.5
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 1.5e-75 287.7 468 40.8
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 2.0e-75 287.3 468 40.6
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.4e-75 286.6 456 40.1
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 2.5e-73 280.4 467 39.6
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 2.1e-72 277.3 446 40.1
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 2.7e-72 276.9 457 40.5
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.0e-71 275.0 478 39.5
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 1.8e-71 274.2 278 50.0
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.9e-71 273.1 433 42.3
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 7.4e-70 268.9 466 38.6
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 4.8e-69 266.2 470 38.7
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 6.3e-69 265.8 539 35.6
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 3.4e-67 260.0 472 39.2
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 5.9e-67 259.2 272 57.4
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.7e-66 257.7 397 42.1
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 5.5e-65 252.7 296 45.3
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 7.2e-65 252.3 357 40.3
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.6e-64 251.1 358 40.5
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 1.1e-62 245.0 407 40.8
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.6e-62 243.8 377 43.2
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 3.3e-62 243.4 208 59.1
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 5.3e-60 236.1 361 39.3
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 7.0e-60 235.7 229 52.8
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.5e-58 229.2 437 36.8
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.5e-57 228.0 385 43.4
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 1.9e-57 227.6 375 42.1
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 5.5e-57 226.1 438 36.1
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 5.5e-57 226.1 373 38.1
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 2.1e-56 224.2 334 39.5
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 6.7e-55 219.2 380 42.9
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 1.2e-54 218.4 453 35.1
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.5e-54 218.0 311 39.2
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.0e-54 217.6 311 39.2
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.8e-53 213.0 306 39.5
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 7.0e-52 209.1 310 39.0
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 5.9e-51 206.1 499 33.1
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 1.7e-50 204.5 351 40.5
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.5e-49 201.4 288 39.9
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 9.4e-49 198.7 191 52.4
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.0e-47 195.3 139 66.2
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 1.2e-46 191.8 231 45.0
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.6e-46 190.7 313 39.3
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 5.4e-44 183.0 222 47.7
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 2.0e-43 181.0 215 45.6
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 3.8e-42 176.8 190 48.4
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.7e-35 154.1 361 35.2
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 4.5e-35 153.3 373 33.2
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.3e-34 151.0 133 53.4
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.3e-33 147.1 402 28.9
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.6e-33 146.4 85 88.2
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.1e-32 144.4 201 40.8
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 6.8e-31 139.4 96 71.9
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 1.8e-28 131.3 162 42.6
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 1.2e-24 118.6 71 70.4
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.7e-24 116.7 169 40.2
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.3e-23 114.4 103 55.3
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.3e-21 108.6 195 37.4
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.1e-20 105.5 82 63.4
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 4.1e-20 103.6 208 36.1
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 7.8e-19 99.4 69 65.2
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 4.1e-12 77.0 63 58.7
BcaC07g36872 Brassica carinata HOM05D003737 ORTHO05D004640 3.9e-10 70.5 215 26.5
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 8.1e-08 62.8 52 55.8
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 3.4e-06 57.4 33 72.7


User provided reference genes

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