Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 2.5e-184 648.7 331 100.0
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.0e-153 547.0 331 84.6
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 4.9e-148 528.1 331 82.8
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 1.4e-147 526.6 332 82.2
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 1.2e-146 523.5 328 81.1
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 7.3e-144 514.2 330 82.1
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 8.1e-143 510.8 330 81.2
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 2.2e-140 502.7 330 79.1
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 4.9e-140 501.5 330 80.0
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 2.1e-138 496.1 329 81.2
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 2.1e-138 496.1 329 81.2
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 3.0e-137 492.3 328 81.1
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 2.5e-136 489.2 329 80.5
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 7.3e-136 487.6 322 80.1
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 1.6e-135 486.5 330 79.4
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 6.4e-124 448.0 338 72.2
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 2.3e-105 386.3 330 67.0
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 2.0e-101 373.2 346 59.2
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 2.6e-101 372.9 237 80.2
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 2.7e-74 283.1 344 49.4
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 9.7e-72 274.6 325 48.6
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 2.4e-70 270.0 325 48.0
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 4.1e-70 269.2 345 44.9
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 5.3e-70 268.9 347 47.0
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 7.7e-69 265.0 344 46.2
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 2.9e-68 263.1 331 48.6
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 6.5e-68 261.9 338 47.9
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 6.5e-68 261.9 340 45.9
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 3.2e-67 259.6 348 45.4
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 3.2e-67 259.6 341 46.3
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 7.2e-67 258.5 345 43.5
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 9.4e-67 258.1 341 45.5
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 2.7e-66 256.5 345 44.9
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 2.7e-66 256.5 338 42.0
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 4.7e-66 255.8 345 44.6
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 6.1e-66 255.4 340 45.3
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 8.0e-66 255.0 345 45.5
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 1.0e-65 254.6 344 44.8
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 6.8e-65 251.9 346 45.7
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 8.8e-65 251.5 342 44.2
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 8.8e-65 251.5 338 41.1
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 2.6e-64 250.0 345 44.1
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 2.6e-64 250.0 345 44.3
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 4.4e-64 249.2 337 44.8
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 7.5e-64 248.4 338 43.2
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 7.5e-64 248.4 349 44.7
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 2.8e-63 246.5 342 43.6
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 3.7e-63 246.1 345 44.9
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 6.3e-63 245.4 348 44.0
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 1.1e-62 244.6 345 44.3
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 1.8e-62 243.8 331 42.9
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 4.1e-62 242.7 332 41.9
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 7.0e-62 241.9 344 43.3
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 9.1e-62 241.5 351 41.9
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 1.6e-61 240.7 347 42.9
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 3.5e-61 239.6 348 42.5
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 4.5e-61 239.2 343 42.6
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 1.7e-60 237.3 350 42.6
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 6.5e-60 235.3 345 40.0
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 4.2e-59 232.6 344 43.0
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 5.5e-59 232.3 349 43.0
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 6.1e-58 228.8 343 39.7
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 8.0e-58 228.4 345 41.4
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.0e-57 228.0 343 42.9
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 3.0e-57 226.5 343 42.0
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 3.0e-57 226.5 331 43.8
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 5.2e-57 225.7 327 42.2
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 1.7e-55 220.7 342 41.2
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 3.7e-55 219.5 343 41.1
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 4.9e-55 219.2 347 42.1
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 6.3e-55 218.8 341 39.0
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 1.1e-54 218.0 344 41.3
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 1.4e-54 217.6 347 38.0
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 1.4e-54 217.6 390 39.5
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 2.0e-53 213.8 347 41.2
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 1.3e-52 211.1 363 37.2
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 5.0e-52 209.1 324 40.7
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 1.1e-51 208.0 332 40.7
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 4.3e-51 206.1 343 38.2
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 5.6e-51 205.7 335 38.2
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 4.7e-50 202.6 345 37.4
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.0e-49 201.4 330 37.6
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.3e-49 200.3 338 38.2
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.7e-47 193.0 259 46.3
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 3.7e-47 193.0 386 37.0
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 4.9e-47 192.6 343 38.5
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.1e-46 191.4 328 38.4
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 1.1e-46 191.4 340 39.1
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 1.8e-46 190.7 332 39.2
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 2.4e-46 190.3 311 40.5
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 4.6e-45 186.0 319 37.0
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 2.3e-44 183.7 310 37.7
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 4.3e-43 179.5 193 49.2
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 5.6e-43 179.1 329 36.5
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 1.6e-42 177.6 353 34.0
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 2.8e-42 176.8 237 43.0
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 4.7e-42 176.0 342 31.9
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 1.0e-41 174.9 354 36.4
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 1.8e-41 174.1 277 36.8
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 4.0e-41 172.9 330 36.7
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 9.8e-40 168.3 372 36.0
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 1.7e-39 167.5 305 38.0
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 3.7e-39 166.4 260 41.2
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 8.3e-39 165.2 448 30.4
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 3.2e-38 163.3 196 45.4
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 3.0e-36 156.8 304 34.5
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 3.9e-36 156.4 266 36.8
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 6.6e-36 155.6 352 31.8
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 1.9e-35 154.1 305 34.4
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 1.2e-34 151.4 259 40.2
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 2.1e-34 150.6 99 78.8
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 4.7e-34 149.4 305 34.8
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 5.8e-32 142.5 337 32.9
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 1.4e-30 137.9 282 34.8
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 5.4e-30 136.0 198 39.4
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 4.6e-29 132.9 218 39.0
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 5.2e-25 119.4 200 39.0
BcaB04g18591 Brassica carinata HOM05D000144 ORTHO05D006884 3.4e-24 116.7 275 35.6
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 4.6e-21 106.3 119 47.1
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 6.0e-21 105.9 399 25.6
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 1.8e-17 94.4 375 24.0
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 2.4e-17 94.0 263 32.7
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 2.4e-17 94.0 263 32.7
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 2.4e-17 94.0 263 32.7
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 3.1e-17 93.6 216 31.9
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 2.6e-16 90.5 173 31.8
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 7.6e-16 89.0 243 31.7
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 3.8e-15 86.7 223 29.6
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 1.9e-14 84.3 218 33.0
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 9.3e-14 82.0 134 36.6
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 2.1e-13 80.9 93 45.2
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 3.3e-11 73.6 146 32.9
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 7.3e-11 72.4 90 35.6
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 9.9e-08 62.0 60 53.3
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.7e-07 61.2 69 52.2
SEGI_30577 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 1.7e-07 61.2 101 35.6
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 4.9e-07 59.7 60 51.7
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 5.4e-06 56.2 39 64.1


User provided reference genes

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