Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 9.4e-98 360.1 177 100.0
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 3.7e-78 295.0 175 85.7
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 1.8e-77 292.7 178 86.0
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 9.2e-77 290.4 175 84.6
BcaB04g21229 Brassica carinata HOM05D002916 ORTHO05D003152 1.0e-75 287.0 178 83.1
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 1.7e-75 286.2 183 80.3
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 5.0e-75 284.6 177 84.2
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 6.6e-75 284.3 183 79.8
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 1.1e-74 283.5 177 84.7
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 2.5e-74 282.3 177 83.6
AT3G10120 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 5.6e-74 281.2 180 81.1
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 1.6e-73 279.6 175 83.4
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 2.8e-73 278.9 175 82.9
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 4.0e-72 275.0 183 78.7
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 3.3e-66 255.4 184 72.8
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 9.8e-63 243.8 149 84.6
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 9.8e-63 243.8 149 84.6
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 4.9e-46 188.3 186 59.7
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 7.1e-45 184.5 186 59.1
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 7.1e-45 184.5 186 59.1
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 9.3e-45 184.1 180 60.6
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 1.2e-44 183.7 185 60.5
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 4.6e-44 181.8 180 60.6
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 4.6e-44 181.8 180 60.6
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 7.8e-44 181.0 184 59.2
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 7.8e-44 181.0 181 58.0
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 1.7e-43 179.9 181 60.2
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 2.3e-43 179.5 184 58.2
Aa31LG3G2650 Aethionema arabicum HOM05D002916 ORTHO05D003152 3.3e-42 175.6 200 54.0
THA.LOC104816397 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 3.3e-42 175.6 187 54.5
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 3.6e-41 172.2 187 56.7
BcaC06g32092 Brassica carinata HOM05D002916 ORTHO05D003152 1.3e-38 163.7 177 57.1
Sp6g38840 Schrenkiella parvula HOM05D002916 ORTHO05D003152 1.3e-38 163.7 179 56.4
BcaB01g05762 Brassica carinata HOM05D002916 ORTHO05D003152 1.7e-38 163.3 176 54.5
BolC3t12736H Brassica oleracea HOM05D002916 ORTHO05D003152 7.3e-34 147.9 153 59.5
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 2.0e-31 139.8 179 45.3
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 4.5e-31 138.7 178 44.4
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 1.3e-30 137.1 175 46.3
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 4.9e-30 135.2 179 45.8
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 8.4e-30 134.4 177 45.8
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 3.2e-29 132.5 179 44.7
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.4e-29 131.7 177 45.2
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 5.4e-29 131.7 180 41.7
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 9.3e-29 131.0 176 43.8
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 2.7e-28 129.4 176 44.3
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 3.9e-27 125.6 179 44.1
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 5.1e-27 125.2 180 40.0
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.1e-27 125.2 180 45.0
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 5.1e-27 125.2 180 42.2
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 8.7e-27 124.4 174 39.1
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.5e-26 122.9 176 40.9
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.3e-26 122.1 176 40.3
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 4.3e-26 122.1 181 42.5
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 7.4e-26 121.3 181 39.8
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.3e-25 120.6 171 40.9
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.6e-25 120.2 176 38.1
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 1.6e-25 120.2 174 39.7
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.1e-25 119.8 176 40.3
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 2.1e-25 119.8 179 42.5
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 2.8e-25 119.4 181 40.3
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 1.1e-24 117.5 175 38.9
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.8e-24 116.7 176 39.8
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.8e-24 116.7 135 48.1
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.8e-24 116.7 177 42.4
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 2.4e-24 116.3 179 40.8
THA.LOC104826943 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 4.0e-24 115.5 180 42.8
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 5.3e-24 115.2 176 38.6
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 6.9e-24 114.8 174 38.5
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 1.2e-23 114.0 182 42.9
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 2.6e-23 112.8 176 38.6
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 5.8e-23 111.7 177 38.4
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 5.8e-23 111.7 193 35.2
CANSAT64G0492 Cannabis sativa HOM05D002916 ORTHO05D003152 7.6e-23 111.3 194 41.8
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 1.3e-22 110.5 179 38.5
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 1.7e-22 110.2 176 40.3
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 2.2e-22 109.8 176 42.0
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 2.9e-22 109.4 176 39.8
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 2.9e-22 109.4 178 36.5
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 2.9e-22 109.4 178 40.4
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 6.5e-22 108.2 178 35.4
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 8.4e-22 107.8 177 38.4
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 8.4e-22 107.8 177 39.0
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 1.1e-21 107.5 176 33.0
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 1.1e-21 107.5 176 39.2
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.1e-21 107.5 176 39.2
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 1.1e-21 107.5 180 38.3
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 1.4e-21 107.1 179 39.1
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 1.4e-21 107.1 177 40.1
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 2.5e-21 106.3 176 39.8
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 5.5e-21 105.1 177 37.3
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 9.3e-21 104.4 176 39.2
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 9.3e-21 104.4 176 36.4
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 1.2e-20 104.0 179 36.9
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 1.6e-20 103.6 177 39.5
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 1.6e-20 103.6 177 37.3
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 2.7e-20 102.8 176 36.9
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.7e-20 102.8 176 36.9
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 3.5e-20 102.4 187 34.8
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 6.0e-20 101.7 176 39.2
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 6.0e-20 101.7 195 34.4
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 1.0e-19 100.9 136 47.1
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 1.3e-19 100.5 179 34.6
A05p13670 Brassica napus HOM05D002916 ORTHO05D003152 1.8e-19 100.1 134 50.7
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 1.8e-19 100.1 176 39.8
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 3.9e-19 99.0 176 39.2
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 3.9e-19 99.0 177 34.5
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 6.7e-19 98.2 184 35.9
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 8.7e-19 97.8 176 31.2
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 4.3e-18 95.5 191 33.0
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 5.7e-18 95.1 177 30.5
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 9.6e-18 94.4 176 31.2
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 9.6e-18 94.4 148 41.9
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 9.6e-18 94.4 178 33.1
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 1.6e-17 93.6 179 36.3
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 1.6e-17 93.6 177 32.2
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 1.6e-17 93.6 176 27.8
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 2.1e-17 93.2 178 34.8
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 3.7e-17 92.4 178 35.4
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 4.8e-17 92.0 163 35.6
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 4.8e-17 92.0 163 35.6
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 6.2e-17 91.7 177 36.2
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 1.1e-16 90.9 176 30.1
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 1.1e-16 90.9 180 33.9
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 1.5e-15 87.0 169 34.3
PSO339G4347 Papaver somniferum HOM05D002916 ORTHO05D003152 2.0e-15 86.7 186 28.5
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 3.4e-15 85.9 179 34.6
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 4.5e-15 85.5 191 29.8
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 4.5e-15 85.5 191 29.8
Nitab4.5_0001712g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 8.4e-14 81.3 133 37.6
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 9.3e-13 77.8 177 31.6
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 1.6e-12 77.0 187 30.5
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 6.1e-12 75.1 125 36.8
BolC6t35258H Brassica oleracea HOM05D002916 ORTHO05D003152 1.0e-11 74.3 75 53.3
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 6.7e-11 71.6 177 29.4
CSS0010688 Camellia sinensis var. sinensis HOM05D002916 ORTHO05D003152 8.7e-11 71.2 122 40.2
Sopen09g004570 Solanum pennellii HOM05D002916 ORTHO05D003152 8.7e-11 71.2 181 28.7
BcaC05g24792 Brassica carinata HOM05D002916 ORTHO05D003152 1.1e-10 70.9 70 55.7
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 9.7e-10 67.8 114 38.6
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 1.3e-09 67.4 192 31.2
DCAR_008976 Daucus carota HOM05D002916 ORTHO05D003152 2.8e-09 66.2 190 27.9
C06p01440 Brassica napus HOM05D002916 ORTHO05D003152 3.7e-09 65.9 69 50.7
TPR.G23310 Trifolium pratense HOM05D002916 ORTHO05D003152 4.8e-09 65.5 176 31.2
Nitab4.5_0003610g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 8.2e-09 64.7 180 32.2
SEGI_19965 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 8.2e-09 64.7 184 29.9
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 1.1e-08 64.3 167 25.1
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 1.1e-08 64.3 168 25.6
Medtr7g104680 Medicago truncatula HOM05D002916 ORTHO05D003152 1.4e-08 63.9 178 26.4
PSO384G2526 Papaver somniferum HOM05D002916 ORTHO05D003152 1.4e-08 63.9 182 26.4
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 2.4e-08 63.2 186 28.5
Haze_00282 Corylus avellana HOM05D002916 ORTHO05D003152 4.1e-08 62.4 191 28.8
Nitab4.5_0000794g0180 Nicotiana tabacum HOM05D002916 ORTHO05D003152 4.1e-08 62.4 81 37.0
TAR623G0367 Trochodendron aralioides HOM05D002916 ORTHO05D003152 4.1e-08 62.4 133 33.8
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 4.5e-07 58.9 182 28.0
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.7e-07 58.2 184 26.6
RcHm_v2.0_Chr1g0382771 Rosa chinensis HOM05D002916 ORTHO05D003152 7.7e-07 58.2 195 26.2
TAR636G0145 Trochodendron aralioides HOM05D002916 ORTHO05D003152 1.0e-06 57.8 189 25.4
Atru.chr12.2401 Acer truncatum HOM05D002916 ORTHO05D003152 1.3e-06 57.4 178 25.3
BcaC08g42908 Brassica carinata HOM05D002916 ORTHO05D003152 1.7e-06 57.0 55 52.7
BraA05t21437Z Brassica rapa HOM05D002916 ORTHO05D003152 1.7e-06 57.0 53 56.6
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 1.7e-06 57.0 190 25.3
DCAR_020363 Daucus carota HOM05D002916 ORTHO05D003152 2.9e-06 56.2 193 26.9
Potri.012G022300 Populus trichocarpa HOM05D002916 ORTHO05D003152 2.9e-06 56.2 179 26.3
Sabra12G0011500 Salix brachista HOM05D002916 ORTHO05D003152 2.9e-06 56.2 178 28.7
Cfa016172 Carpinus fangiana HOM05D002916 ORTHO05D003152 3.8e-06 55.8 191 28.3
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 3.8e-06 55.8 180 28.9
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 3.8e-06 55.8 171 28.1
MBI04_g15577_MAGBIO Magnolia biondii HOM05D002916 ORTHO05D003152 3.8e-06 55.8 185 25.4
Gorai.008G265400 Gossypium raimondii HOM05D002916 ORTHO05D003152 5.0e-06 55.5 169 26.0
Manes.12G116500 Manihot esculenta HOM05D002916 ORTHO05D003152 5.0e-06 55.5 168 28.6
Medtr3g092470 Medicago truncatula HOM05D002916 ORTHO05D003152 5.0e-06 55.5 181 28.2
PSO478G4364 Papaver somniferum HOM05D002916 ORTHO05D003152 5.0e-06 55.5 170 28.2
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 5.0e-06 55.5 166 27.7
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 8.5e-06 54.7 184 26.6


User provided reference genes

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