Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 4.1e-81 304.7 154 100.0
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 1.2e-67 260.0 154 87.0
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 1.3e-66 256.5 156 87.2
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.3e-66 256.5 154 85.1
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.3e-66 256.5 154 85.1
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 1.1e-65 253.4 148 86.5
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 3.1e-65 251.9 150 84.0
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 7.0e-65 250.8 150 85.3
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 9.1e-65 250.4 150 84.7
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 2.0e-64 249.2 155 85.8
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 4.5e-64 248.1 150 84.0
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 4.5e-64 248.1 150 84.7
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 2.3e-63 245.7 154 83.1
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 3.8e-63 245.0 154 81.8
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 1.5e-62 243.0 154 81.2
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 1.2e-61 240.0 150 80.7
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 4.7e-61 238.0 145 84.1
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 2.4e-57 225.7 154 76.0
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 9.5e-54 213.8 140 78.6
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 4.7e-45 184.9 133 69.9
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 5.4e-41 171.4 146 62.3
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 3.9e-39 165.2 146 61.0
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 1.1e-38 163.7 148 62.8
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 7.3e-38 161.0 106 76.4
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 9.5e-38 160.6 146 61.0
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 6.2e-37 157.9 146 59.6
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 6.2e-37 157.9 147 57.1
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 1.4e-36 156.8 148 58.1
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 1.4e-36 156.8 145 60.0
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 4.0e-36 155.2 147 59.2
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 5.2e-36 154.8 147 59.9
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 8.9e-36 154.1 146 59.6
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 8.9e-36 154.1 143 60.8
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 1.2e-35 153.7 146 57.5
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 1.5e-35 153.3 145 60.0
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 2.0e-35 152.9 146 56.8
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 3.4e-35 152.1 146 56.2
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 7.6e-35 151.0 106 73.6
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 7.6e-35 151.0 147 56.5
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 7.6e-35 151.0 148 57.4
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 9.9e-35 150.6 146 56.2
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 1.3e-34 150.2 146 56.2
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 2.2e-34 149.4 149 57.0
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 2.2e-34 149.4 106 72.6
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 2.2e-34 149.4 106 72.6
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 2.2e-34 149.4 148 54.7
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.9e-34 149.1 146 56.2
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 2.9e-34 149.1 147 56.5
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 3.7e-34 148.7 146 56.2
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 3.7e-34 148.7 147 55.8
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 4.9e-34 148.3 140 57.9
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 6.4e-34 147.9 147 56.5
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 6.4e-34 147.9 146 55.5
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 8.4e-34 147.5 146 56.2
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.9e-33 146.4 148 54.1
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.4e-33 146.0 146 55.5
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 2.4e-33 146.0 146 54.1
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 4.1e-33 145.2 145 53.1
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 4.1e-33 145.2 147 57.1
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 4.1e-33 145.2 147 55.8
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 4.1e-33 145.2 151 57.0
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.2e-32 143.7 149 57.0
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 1.2e-32 143.7 149 57.0
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 1.2e-32 143.7 147 56.5
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 2.1e-32 142.9 150 52.7
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 2.1e-32 142.9 150 52.7
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 3.5e-32 142.1 145 53.1
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 3.0e-31 139.0 149 54.4
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 3.0e-31 139.0 145 55.2
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 8.6e-31 137.5 158 50.0
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 1.5e-30 136.7 147 53.1
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 1.9e-30 136.3 145 52.4
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 2.5e-30 136.0 150 52.0
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.5e-30 136.0 131 52.7
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 5.6e-30 134.8 142 54.2
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 9.6e-30 134.0 144 54.9
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 9.6e-30 134.0 150 54.7
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 1.2e-29 133.7 131 55.0
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 2.1e-29 132.9 150 52.0
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 2.1e-29 132.9 144 51.4
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 2.8e-29 132.5 147 55.8
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 2.8e-29 132.5 105 64.8
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 6.2e-29 131.3 159 50.3
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 2.4e-28 129.4 146 49.3
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 5.2e-28 128.3 115 57.4
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 1.5e-27 126.7 120 55.8
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 4.4e-27 125.2 147 50.3
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 5.8e-27 124.8 137 53.3
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 7.6e-27 124.4 144 53.5
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 2.9e-26 122.5 105 58.1
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 3.8e-26 122.1 121 53.7
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 3.8e-26 122.1 147 51.7
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 3.8e-26 122.1 151 49.7
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 6.4e-26 121.3 147 51.0
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 6.4e-26 121.3 142 48.6
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 1.1e-25 120.6 147 48.3
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 5.4e-25 118.2 145 50.3
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 5.4e-25 118.2 75 74.7
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 2.1e-24 116.3 149 47.7
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 2.7e-24 115.9 133 51.9
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 2.7e-24 115.9 145 47.6
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 3.5e-24 115.5 146 49.3
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 4.6e-24 115.2 144 48.6
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 6.0e-24 114.8 138 49.3
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 1.0e-23 114.0 146 50.0
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 1.3e-23 113.6 128 49.2
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 5.1e-23 111.7 105 52.4
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 2.5e-22 109.4 143 48.3
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 3.6e-21 105.5 108 53.7
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 3.6e-21 105.5 135 46.7
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 6.2e-21 104.8 149 47.7
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 2.4e-20 102.8 130 48.5
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 4.4e-19 98.6 136 47.8
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 4.4e-19 98.6 107 55.1
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 4.4e-19 98.6 107 55.1
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 1.4e-17 93.6 140 44.3
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 1.9e-17 93.2 79 59.5
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 2.7e-16 89.4 87 59.8
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 2.3e-15 86.3 83 62.7
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 2.3e-15 86.3 83 62.7
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 2.6e-11 72.8 141 36.2
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 2.4e-09 66.2 111 45.0
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 6.0e-08 61.6 70 51.4
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 6.7e-07 58.2 101 36.6


User provided reference genes

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