Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 2.6e-237 825.1 439 100.0
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 2.3e-222 775.4 435 93.8
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 2.4e-219 765.4 437 92.9
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 3.5e-218 761.5 438 92.7
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 2.3e-217 758.8 435 91.7
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 3.8e-217 758.1 437 92.2
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 5.0e-217 757.7 438 92.5
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 8.6e-217 756.9 438 92.0
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 7.3e-216 753.8 438 91.8
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 2.3e-214 748.8 437 91.8
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 6.6e-209 730.7 436 89.0
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 6.0e-194 681.0 431 82.6
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 9.0e-182 640.6 435 75.4
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 1.3e-164 583.6 433 71.6
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 3.0e-161 572.4 429 70.6
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 5.1e-161 571.6 429 70.4
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 2.5e-160 569.3 431 69.1
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 5.6e-160 568.2 434 69.4
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 1.6e-159 566.6 436 70.2
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 1.6e-159 566.6 434 68.7
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 1.4e-158 563.5 451 67.0
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 4.5e-157 558.5 430 68.1
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 2.2e-156 556.2 427 67.4
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 4.9e-156 555.1 434 67.3
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.1e-155 553.9 434 67.5
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 1.1e-155 553.9 426 68.1
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 1.4e-155 553.5 436 66.5
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 4.2e-155 552.0 423 68.1
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 7.1e-155 551.2 438 67.1
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 2.1e-154 549.7 423 67.6
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 2.1e-154 549.7 436 67.7
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 4.6e-154 548.5 436 67.0
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.3e-153 547.0 438 67.1
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 1.8e-153 546.6 436 66.7
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.8e-153 546.6 429 68.5
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 3.9e-153 545.4 427 66.7
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.1e-153 545.0 425 67.1
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 1.5e-152 543.5 410 69.3
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.9e-152 543.1 438 67.4
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 2.5e-152 542.7 426 66.7
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 2.5e-152 542.7 438 67.4
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 4.3e-152 542.0 429 66.7
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 7.4e-152 541.2 431 66.4
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 3.7e-151 538.9 430 65.1
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 4.8e-151 538.5 429 68.3
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 9.0e-150 534.3 430 64.4
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.2e-149 533.9 429 67.1
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 5.9e-149 531.6 429 66.0
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 2.9e-148 529.3 433 66.1
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 6.5e-148 528.1 429 64.3
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 6.5e-148 528.1 429 64.3
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 8.5e-148 527.7 442 64.0
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 7.2e-147 524.6 429 65.0
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 7.2e-147 524.6 428 64.7
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 9.4e-147 524.2 428 65.4
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 9.4e-147 524.2 429 64.6
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 9.4e-147 524.2 429 65.5
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 2.1e-146 523.1 429 65.7
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 2.1e-146 523.1 429 65.5
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 4.6e-146 521.9 429 65.3
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.1e-144 517.3 433 64.4
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.5e-144 516.9 428 64.5
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.5e-144 516.9 436 64.2
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 5.7e-144 515.0 433 64.2
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 2.8e-143 512.7 428 62.6
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.7e-143 512.3 426 62.7
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 3.7e-143 512.3 437 63.6
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 6.3e-143 511.5 426 63.4
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 8.2e-143 511.1 429 64.3
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 1.1e-142 510.8 430 63.3
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 3.1e-142 509.2 438 62.8
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 6.9e-142 508.1 412 64.8
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 5.9e-141 505.0 430 64.4
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 7.7e-141 504.6 431 62.9
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 5.0e-140 501.9 425 63.3
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 1.4e-139 500.4 430 62.6
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.9e-139 500.0 508 55.3
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 2.5e-139 499.6 430 61.9
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 5.5e-139 498.4 425 61.4
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 7.2e-139 498.0 428 62.1
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 3.6e-138 495.7 424 61.8
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 4.7e-138 495.4 461 59.9
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 4.7e-138 495.4 425 62.8
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 4.7e-138 495.4 425 62.8
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 2.3e-137 493.0 427 62.1
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 2.3e-137 493.0 429 60.6
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 3.0e-137 492.7 428 61.2
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 3.9e-137 492.3 411 64.2
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 1.5e-136 490.3 425 62.6
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 5.7e-136 488.4 435 61.4
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 8.2e-135 484.6 438 60.3
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 3.1e-134 482.6 374 68.4
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.1e-134 482.6 429 61.3
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 4.1e-134 482.3 428 62.9
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 4.1e-134 482.3 432 61.1
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 9.1e-134 481.1 436 59.2
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 2.0e-133 479.9 411 62.5
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 2.6e-133 479.6 440 59.5
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.6e-133 479.6 438 59.8
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 4.5e-133 478.8 430 59.1
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 1.1e-131 474.2 426 60.6
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 1.1e-131 474.2 417 62.1
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.5e-131 473.8 478 56.3
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.5e-131 473.8 368 65.5
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 4.2e-131 472.2 424 63.4
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 7.2e-131 471.5 430 59.3
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 5.7e-128 461.8 433 57.7
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 1.3e-127 460.7 429 59.2
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 3.7e-127 459.1 417 61.9
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 2.0e-125 453.4 440 58.0
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 2.5e-123 446.4 428 55.4
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.2e-122 444.1 416 58.7
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 4.0e-121 439.1 428 57.7
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 1.2e-120 437.6 371 62.8
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 2.8e-119 433.0 431 55.2
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 6.3e-119 431.8 426 56.1
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.3e-113 413.3 254 89.8
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.3e-111 407.5 430 55.8
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.1e-110 404.4 438 53.2
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.1e-110 402.9 429 53.6
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 7.7e-109 398.3 514 48.1
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 2.6e-104 383.3 324 64.2
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.4e-102 377.5 342 60.8
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 1.4e-97 360.9 295 63.1
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 1.4e-97 360.9 380 57.4
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 3.1e-97 359.8 429 50.3
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 8.9e-97 358.2 427 50.1
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.5e-96 357.5 300 62.7
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 1.5e-91 340.9 182 91.8
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 2.3e-89 333.6 438 44.7
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.2e-88 331.3 427 44.0
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 8.9e-81 305.1 275 58.5
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.5e-67 261.2 414 42.3
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.1e-65 253.4 323 48.3
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 6.9e-65 252.3 201 68.2
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.4e-64 250.0 178 70.2
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 6.0e-53 212.6 190 58.9
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 5.1e-52 209.5 193 56.0
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.4e-48 196.8 160 68.8
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 4.2e-46 189.9 115 85.2
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 4.6e-45 186.4 175 56.0
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 9.0e-41 172.2 147 67.3
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 6.5e-39 166.0 139 56.1
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 7.2e-38 162.5 242 45.0
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 3.3e-35 153.7 120 69.2
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 1.8e-25 121.3 89 62.9
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 2.5e-22 110.9 80 70.0
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 5.7e-19 99.8 98 57.1
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 9.7e-19 99.0 113 48.7
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 4.1e-17 93.6 113 46.9
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 8.5e-15 85.9 164 36.0
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 6.7e-12 76.3 372 24.7
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 6.3e-10 69.7 440 23.6
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 1.1e-09 68.9 44 75.0
Lsat_1_v5_gn_7_25540 Lactuca sativa HOM05D001886 ORTHO05D005666 2.0e-08 64.7 51 66.7


User provided reference genes

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