Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 1.7e-58 229.2 117 100.0
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 1.2e-48 196.4 118 87.3
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.0e-47 193.4 117 85.5
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 1.7e-47 192.6 117 85.5
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 1.7e-47 192.6 117 85.5
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 1.7e-47 192.6 117 85.5
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 1.2e-45 186.4 118 84.7
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 1.2e-45 186.4 118 84.7
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 5.2e-44 181.0 118 79.7
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 1.2e-40 169.9 114 76.3
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 2.1e-37 159.1 117 73.5
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 3.6e-37 158.3 117 70.1
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 2.6e-35 152.1 111 76.6
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 2.4e-33 145.6 111 72.1
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 2.4e-33 145.6 111 72.1
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 2.4e-33 145.6 111 72.1
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 2.4e-33 145.6 111 72.1
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 7.0e-33 144.1 110 70.0
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 5.9e-32 141.0 110 70.0
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 5.9e-32 141.0 110 70.0
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 1.3e-31 139.8 112 70.5
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.9e-31 138.7 110 68.2
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.1e-30 136.7 112 68.8
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 2.5e-30 135.6 119 66.4
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.3e-30 135.2 128 62.5
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 9.5e-30 133.7 111 67.6
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 1.6e-29 132.9 117 62.4
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.6e-29 132.9 119 64.7
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 2.8e-29 132.1 128 61.7
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 3.6e-29 131.7 119 63.9
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 3.6e-29 131.7 119 63.9
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 3.6e-29 131.7 117 64.1
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 6.1e-29 131.0 116 64.7
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 6.1e-29 131.0 117 65.0
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 8.0e-29 130.6 113 65.5
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 8.0e-29 130.6 117 63.2
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 1.0e-28 130.2 117 64.1
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.8e-28 129.4 117 62.4
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.3e-28 129.0 117 62.4
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 2.3e-28 129.0 113 60.2
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 2.3e-28 129.0 117 62.4
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.0e-28 128.3 117 62.4
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 5.2e-28 127.9 120 58.3
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 6.8e-28 127.5 119 61.3
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 8.9e-28 127.1 81 75.3
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.2e-27 126.7 118 62.7
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.5e-27 126.3 118 58.5
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.0e-27 125.9 117 62.4
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 2.0e-27 125.9 109 66.1
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 2.6e-27 125.6 124 57.3
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.6e-27 125.6 120 62.5
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 2.6e-27 125.6 114 61.4
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.6e-27 125.6 115 62.6
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 9.8e-27 123.6 112 59.8
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 9.8e-27 123.6 80 77.5
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 9.8e-27 123.6 112 61.6
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 9.8e-27 123.6 126 60.3
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 1.7e-26 122.9 82 75.6
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.7e-26 122.9 76 78.9
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.7e-26 122.9 119 60.5
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.7e-26 122.9 120 57.5
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 1.7e-26 122.9 115 60.9
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.7e-26 122.9 126 61.1
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 2.2e-26 122.5 119 62.2
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 2.2e-26 122.5 116 56.9
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 2.2e-26 122.5 112 61.6
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 2.9e-26 122.1 119 58.8
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 2.9e-26 122.1 127 58.3
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.9e-26 122.1 117 59.0
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 3.7e-26 121.7 108 61.1
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 3.7e-26 121.7 107 62.6
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 4.9e-26 121.3 124 58.9
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 6.4e-26 120.9 116 56.9
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 6.4e-26 120.9 118 60.2
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 8.3e-26 120.6 80 73.8
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 1.1e-25 120.2 77 77.9
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 1.1e-25 120.2 117 59.0
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 1.4e-25 119.8 118 59.3
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 1.9e-25 119.4 127 60.6
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 1.9e-25 119.4 94 64.9
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 2.4e-25 119.0 122 59.8
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 2.4e-25 119.0 122 59.8
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 2.4e-25 119.0 77 75.3
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 3.2e-25 118.6 81 70.4
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.1e-25 118.2 133 52.6
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 7.0e-25 117.5 110 58.2
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 7.0e-25 117.5 76 75.0
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 1.6e-24 116.3 123 52.8
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 2.0e-24 115.9 107 57.9
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 3.5e-24 115.2 81 69.1
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 3.5e-24 115.2 81 69.1
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 4.6e-24 114.8 106 60.4
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 6.0e-24 114.4 111 58.6
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 6.0e-24 114.4 111 58.6
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 7.8e-24 114.0 73 79.5
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 1.0e-23 113.6 121 53.7
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 1.0e-23 113.6 111 57.7
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 1.0e-23 113.6 115 56.5
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.3e-23 113.2 117 54.7
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 1.7e-23 112.8 80 70.0
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 1.7e-23 112.8 80 70.0
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-23 112.8 113 59.3
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.7e-23 112.8 112 58.9
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.3e-23 112.5 118 57.6
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 3.9e-23 111.7 81 64.2
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 6.6e-23 110.9 114 54.4
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 6.6e-23 110.9 71 77.5
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 8.6e-23 110.5 116 54.3
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.5e-22 109.8 111 56.8
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 3.3e-22 108.6 124 49.2
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 5.6e-22 107.8 118 53.4
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 7.3e-22 107.5 116 52.6
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 9.5e-22 107.1 117 53.0
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 2.8e-21 105.5 94 60.6
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.8e-20 102.8 72 66.7
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 2.3e-20 102.4 113 54.9
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 6.8e-20 100.9 62 79.0
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.5e-19 99.8 110 48.2
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.4e-19 98.6 77 66.2
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 7.5e-19 97.4 93 59.1
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 1.1e-17 93.6 117 48.7
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.1e-17 91.7 98 57.1
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 5.4e-17 91.3 73 61.6
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 5.4e-17 91.3 96 58.3
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 9.2e-17 90.5 57 77.2
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 2.1e-16 89.4 120 49.2
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 4.6e-16 88.2 81 54.3
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 1.0e-15 87.0 69 66.7
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.1e-15 84.7 65 66.2
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 5.1e-15 84.7 85 56.5
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 8.6e-15 84.0 57 75.4
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 3.6e-13 78.6 78 52.6
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 1.1e-12 77.0 44 77.3
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 4.0e-12 75.1 134 39.6
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 2.9e-10 68.9 53 60.4
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 8.3e-10 67.4 44 72.7
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 2.5e-06 55.8 84 41.7


User provided reference genes

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