Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 5.2e-282 973.8 510 100.0
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 3.8e-277 957.6 510 97.8
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 9.5e-276 953.0 510 97.5
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 2.1e-275 951.8 510 96.7
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 3.6e-275 951.0 510 97.6
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.0e-274 949.5 510 97.3
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.4e-274 949.1 510 96.3
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 2.3e-274 948.3 510 95.7
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 2.3e-274 948.3 510 95.7
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.2e-273 946.0 510 95.5
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 1.2e-273 946.0 510 96.9
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 2.6e-273 944.9 510 96.3
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 9.8e-273 943.0 510 95.1
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 9.8e-273 943.0 510 96.5
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 1.3e-272 942.6 510 96.3
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 1.7e-272 942.2 510 96.5
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 1.7e-269 932.2 510 93.7
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 2.9e-264 914.8 510 93.9
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 3.7e-264 914.4 510 93.7
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 3.7e-264 914.4 510 93.7
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 1.1e-263 912.9 510 93.5
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 5.4e-263 910.6 494 96.6
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 2.8e-259 898.3 494 93.5
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 1.1e-255 886.3 511 87.5
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 4.1e-255 884.4 510 87.8
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 5.4e-255 884.0 510 87.8
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 6.0e-254 880.6 511 87.7
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 7.8e-254 880.2 510 87.6
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 1.0e-253 879.8 510 87.8
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.0e-253 879.8 510 87.8
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 3.0e-253 878.2 510 88.6
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 3.0e-253 878.2 511 86.7
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 3.9e-253 877.9 511 86.9
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 3.9e-253 877.9 510 87.1
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 5.1e-253 877.5 510 87.5
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 6.6e-253 877.1 510 87.3
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 8.6e-253 876.7 511 86.7
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 8.6e-253 876.7 510 87.5
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 2.5e-252 875.2 510 86.3
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 3.3e-252 874.8 510 86.1
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 5.6e-252 874.0 510 87.1
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 1.6e-251 872.5 510 86.5
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 2.8e-251 871.7 510 87.5
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 2.8e-251 871.7 510 86.5
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 8.1e-251 870.2 510 87.5
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 8.1e-251 870.2 511 86.7
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 1.1e-250 869.8 510 87.1
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 1.8e-250 869.0 510 86.1
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 3.1e-250 868.2 510 87.1
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 4.0e-250 867.8 511 86.9
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 5.2e-250 867.5 510 86.7
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 6.8e-250 867.1 510 86.5
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 6.8e-250 867.1 510 86.5
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 1.2e-249 866.3 510 86.5
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 1.2e-249 866.3 510 85.7
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 4.4e-249 864.4 510 85.9
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 9.9e-249 863.2 510 85.7
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.3e-248 862.8 510 86.5
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 1.3e-248 862.8 510 85.9
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.7e-248 862.4 510 86.1
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 2.9e-248 861.7 510 85.9
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 8.4e-248 860.1 510 85.5
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 1.1e-247 859.8 510 85.9
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.1e-247 859.8 510 86.9
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 1.1e-247 859.8 510 85.3
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 1.1e-247 859.8 511 85.9
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.9e-247 859.0 511 85.5
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 1.9e-247 859.0 510 86.1
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 3.2e-247 858.2 510 86.7
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 4.1e-247 857.8 510 86.1
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 1.6e-246 855.9 510 84.7
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 1.6e-246 855.9 510 86.1
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 2.1e-246 855.5 510 84.7
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.5e-246 854.7 512 85.2
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 3.5e-246 854.7 510 85.7
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 4.6e-246 854.4 509 85.1
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 1.0e-245 853.2 510 85.1
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 2.3e-245 852.0 510 85.1
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 3.0e-245 851.7 510 85.1
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 7.3e-244 847.0 510 85.5
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 1.6e-243 845.9 510 85.3
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 2.1e-243 845.5 527 83.1
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 2.1e-243 845.5 510 83.7
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 2.8e-243 845.1 511 84.5
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 4.7e-243 844.3 510 84.5
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 6.2e-243 844.0 510 83.5
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 8.1e-243 843.6 511 83.8
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 8.1e-243 843.6 510 85.3
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.8e-242 842.4 510 84.3
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 2.4e-242 842.0 510 83.1
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.1e-242 841.6 510 83.3
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 5.2e-242 840.9 502 86.3
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 2.0e-241 839.0 511 83.6
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.3e-240 836.3 510 83.9
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 1.3e-240 836.3 510 82.5
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.3e-240 836.3 510 82.7
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.3e-240 836.3 510 82.5
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.3e-240 836.3 510 82.5
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 2.2e-240 835.5 511 84.0
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 2.9e-240 835.1 510 83.3
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 2.9e-240 835.1 511 83.6
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 2.9e-240 835.1 549 79.1
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 3.2e-239 831.6 511 83.2
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 7.1e-239 830.5 512 83.8
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 9.3e-239 830.1 511 83.2
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 1.2e-238 829.7 494 87.2
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 3.5e-238 828.2 510 81.8
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 3.0e-237 825.1 510 82.2
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 5.1e-237 824.3 472 89.2
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 1.1e-236 823.2 441 96.8
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 1.5e-236 822.8 512 83.2
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 5.6e-236 820.8 524 80.2
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 1.8e-234 815.8 505 83.2
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 2.4e-234 815.5 511 81.6
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 8.4e-232 807.0 479 84.8
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 1.9e-231 805.8 556 77.0
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 4.2e-231 804.7 494 82.4
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 7.1e-231 803.9 494 84.2
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 3.3e-228 795.0 511 79.6
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 8.1e-227 790.4 547 75.9
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.7e-224 782.7 510 77.1
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 4.9e-224 781.2 512 79.3
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 5.5e-223 777.7 511 78.9
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 9.3e-223 776.9 511 76.7
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 1.9e-220 769.2 510 79.2
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 3.3e-220 768.5 524 77.3
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 3.3e-220 768.5 524 77.3
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 7.4e-220 767.3 510 78.4
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 8.2e-219 763.8 512 78.5
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 1.6e-206 723.0 472 81.1
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 3.3e-204 715.3 511 74.2
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 4.5e-201 704.9 503 73.0
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 1.0e-200 703.7 413 86.7
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.2e-191 671.8 510 70.0
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 1.3e-187 660.2 514 64.0
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 8.2e-187 657.5 503 67.4
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 4.7e-182 641.7 375 86.9
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 7.0e-178 627.9 468 69.9
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 6.8e-173 611.3 514 59.9
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 2.7e-169 599.4 365 84.7
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 1.5e-167 593.6 379 80.2
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 4.7e-166 588.6 364 83.0
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 6.1e-166 588.2 522 59.6
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 6.3e-163 578.2 511 57.7
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.1e-162 575.5 494 59.3
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 1.1e-159 567.4 504 63.3
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 2.2e-155 553.1 345 83.8
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 2.9e-155 552.7 325 88.3
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.4e-154 550.4 499 54.9
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.9e-146 523.5 457 65.9
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 9.2e-146 521.2 307 88.6
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.3e-136 490.7 284 89.1
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 5.4e-130 468.8 383 61.6
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 6.2e-118 428.7 254 84.3
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 3.8e-115 419.5 509 47.2
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.8e-110 402.5 245 84.9
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.6e-105 386.0 386 54.4
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 1.8e-104 384.0 484 44.6
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 2.5e-103 380.2 259 75.7
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 4.3e-95 352.8 519 37.6
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 7.0e-77 292.4 199 76.9
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.7e-71 271.9 343 46.1
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 2.9e-67 260.4 503 37.6
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.2e-60 238.4 142 85.2
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 2.1e-57 227.6 365 42.2
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.7e-57 226.5 289 46.7
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 9.8e-47 192.2 117 79.5
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.0e-43 182.2 206 52.4
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 2.9e-43 180.6 171 63.7
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 5.6e-42 176.4 197 50.8
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 9.5e-34 149.1 106 73.6
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 7.5e-31 139.4 119 58.8
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 4.1e-29 133.7 82 87.8
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 1.0e-19 102.4 121 56.2
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 6.6e-11 73.2 67 58.2
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 5.6e-10 70.1 39 84.6
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 8.1e-09 66.2 37 83.8
PSO541G6111 Papaver somniferum HOM05D003907 ORTHO05D305003 3.8e-06 57.4 38 73.7


User provided reference genes

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