Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 2.3e-108 395.6 202 100.0
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 2.9e-87 325.5 202 83.7
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 5.0e-87 324.7 202 83.2
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.1e-86 323.6 200 83.0
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 3.7e-82 308.5 202 79.7
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.6e-80 303.1 202 79.7
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 2.3e-76 289.3 202 75.2
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 2.3e-76 289.3 202 75.2
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 8.9e-76 287.3 202 74.8
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 2.7e-72 275.8 202 72.8
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 8.0e-69 264.2 201 69.7
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 2.3e-63 246.1 202 61.4
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 9.5e-62 240.7 201 59.7
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 3.1e-60 235.7 202 58.4
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.4e-57 226.9 202 55.9
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 1.2e-56 223.8 187 69.0
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 3.4e-51 205.7 199 48.7
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 4.9e-50 201.8 199 48.7
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 4.1e-49 198.7 199 48.2
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 6.0e-48 194.9 198 48.0
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 3.0e-47 192.6 201 49.8
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 5.1e-47 191.8 202 45.0
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 3.3e-46 189.1 199 45.7
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 7.3e-46 188.0 202 45.0
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.1e-45 186.4 193 50.8
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 2.8e-45 186.0 197 46.7
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 6.2e-45 184.9 199 45.2
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 8.1e-45 184.5 195 46.2
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 2.4e-44 183.0 198 44.9
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 5.2e-44 181.8 199 44.2
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 8.9e-44 181.0 199 43.7
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 8.9e-44 181.0 199 45.2
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 2.0e-43 179.9 199 45.7
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 5.8e-43 178.3 195 44.1
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 7.6e-43 177.9 195 44.1
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.7e-42 176.8 200 43.5
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 1.7e-42 176.8 199 42.7
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.8e-42 175.6 202 43.1
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 3.8e-42 175.6 199 44.2
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 8.4e-42 174.5 202 42.6
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.4e-41 173.7 202 42.1
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.9e-41 173.3 199 44.7
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 3.2e-41 172.6 202 42.6
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 3.2e-41 172.6 200 41.5
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 3.5e-40 169.1 196 41.3
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 1.3e-39 167.2 163 56.4
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 3.9e-39 165.6 108 80.6
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 3.9e-39 165.6 196 41.3
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 6.6e-39 164.9 198 41.4
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.3e-38 162.2 198 40.4
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 4.3e-38 162.2 200 41.0
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 5.6e-38 161.8 198 40.9
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.6e-37 160.2 198 40.4
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 1.6e-37 160.2 200 40.0
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 2.1e-37 159.8 131 66.4
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 2.1e-37 159.8 131 66.4
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.1e-37 159.8 198 40.4
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.1e-37 159.8 198 40.4
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 8.1e-37 157.9 199 44.2
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 2.4e-36 156.4 199 39.7
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.3e-36 155.2 198 39.4
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 2.0e-35 153.3 198 39.9
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 7.6e-35 151.4 195 37.9
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 9.9e-35 151.0 184 39.1
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 3.8e-34 149.1 199 39.2
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 2.1e-32 143.3 215 35.8
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 1.3e-31 140.6 199 37.7
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 3.9e-31 139.0 195 38.5
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 6.6e-31 138.3 106 72.6
BcaC04g20357 Brassica carinata HOM05D004264 ORTHO05D004680 2.5e-30 136.3 105 70.5
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 2.5e-30 136.3 105 69.5
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 4.3e-30 135.6 105 69.5
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 9.6e-30 134.4 105 68.6
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 1.4e-28 130.6 105 68.6
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 4.0e-28 129.0 272 29.8
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 5.8e-27 125.2 194 31.4
BcaB05g23097 Brassica carinata HOM05D004264 ORTHO05D004680 2.2e-26 123.2 105 63.8
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 1.4e-25 120.6 190 33.7
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 2.4e-25 119.8 195 34.4
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.8e-23 113.6 200 32.5
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.8e-23 113.6 195 31.8
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 2.3e-23 113.2 198 33.3
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 1.5e-22 110.5 195 31.8
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 3.3e-22 109.4 194 32.0
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 2.1e-21 106.7 140 41.4
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 2.1e-21 106.7 107 51.4
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 1.8e-20 103.6 160 35.0
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.6e-19 99.8 91 48.4
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 3.4e-19 99.4 107 47.7
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 1.3e-18 97.4 148 36.5
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 2.2e-18 96.7 86 46.5
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 2.2e-18 96.7 137 38.7
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 1.1e-17 94.4 107 45.8
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.4e-17 94.0 186 31.2
A03p65180 Brassica napus HOM05D007568 ORTHO05D009779 2.5e-17 93.2 73 69.9
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 2.5e-17 93.2 86 44.2
A07p04740 Brassica napus HOM05D004264 ORTHO05D004680 3.2e-17 92.8 73 69.9
BraA07t28261Z Brassica rapa HOM05D004264 ORTHO05D004680 3.2e-17 92.8 73 69.9
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 3.2e-17 92.8 107 43.0
BolC9t57329H Brassica oleracea HOM05D004264 ORTHO05D004680 1.6e-16 90.5 73 69.9
BraA07t28331Z Brassica rapa HOM05D004264 ORTHO05D004680 2.7e-16 89.7 75 66.7
A02p28890 Brassica napus HOM05D004264 ORTHO05D004680 4.6e-16 89.0 73 68.5
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 4.6e-16 89.0 113 42.5
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 7.9e-16 88.2 92 38.0
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 1.3e-15 87.4 81 45.7
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 3.0e-15 86.3 107 42.1
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 3.0e-15 86.3 57 63.2
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 5.1e-15 85.5 81 44.4
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 8.7e-15 84.7 107 38.3
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 1.1e-14 84.3 107 42.1
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.5e-14 84.0 107 41.1
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.3e-14 82.8 107 40.2
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 5.7e-14 82.0 183 30.6
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 9.6e-14 81.3 107 40.2
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 9.6e-14 81.3 57 54.4
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.3e-13 80.9 57 57.9
A06p35970 Brassica napus HOM05D004264 ORTHO05D004680 1.6e-13 80.5 106 49.1
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 2.8e-13 79.7 75 46.7
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 3.7e-13 79.3 107 39.3
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 4.8e-13 79.0 62 51.6
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 4.8e-13 79.0 59 57.6
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 8.2e-13 78.2 56 55.4
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 1.4e-12 77.4 103 37.9
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 1.4e-12 77.4 66 48.5
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 2.4e-12 76.6 84 35.7
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 3.1e-12 76.3 107 38.3
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 1.2e-11 74.3 61 47.5
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 1.2e-11 74.3 107 37.4
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 3.4e-11 72.8 107 39.3
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 5.8e-11 72.0 113 40.7
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 7.6e-11 71.6 126 33.3
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 1.3e-10 70.9 90 40.0
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.3e-10 70.9 107 37.4
A03p65190 Brassica napus HOM05D024600 ORTHO05D004680 2.2e-10 70.1 59 64.4
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 2.2e-10 70.1 58 55.2
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 2.9e-10 69.7 104 35.6
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.8e-10 69.3 99 36.4
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 3.8e-10 69.3 66 47.0
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 3.8e-10 69.3 107 34.6
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 3.8e-10 69.3 107 34.6
A03p36320 Brassica napus HOM05D024600 ORTHO05D004680 5.0e-10 68.9 64 60.9
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 6.5e-10 68.6 117 35.9
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 8.4e-10 68.2 107 37.4
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 1.4e-09 67.4 117 38.5
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 1.4e-09 67.4 107 35.5
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.4e-09 67.4 108 34.3
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.5e-09 66.6 99 35.4
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 3.2e-09 66.2 190 22.1
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 4.2e-09 65.9 100 36.0
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 7.1e-09 65.1 99 34.3
A05p35200 Brassica napus HOM05D004264 ORTHO05D004680 9.3e-09 64.7 47 76.6
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 1.2e-08 64.3 52 50.0
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 1.2e-08 64.3 52 50.0
A05p35220 Brassica napus HOM05D024600 ORTHO05D004680 2.7e-08 63.2 58 58.6
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 2.7e-08 63.2 57 50.9
C09p21930 Brassica napus HOM05D024600 ORTHO05D004680 3.5e-08 62.8 58 58.6
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 6.1e-08 62.0 73 41.1
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 2.3e-07 60.1 103 33.0
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 5.1e-07 58.9 107 32.7
BolC3t16664H Brassica oleracea HOM05D004264 ORTHO05D004680 6.7e-07 58.5 34 82.4
AagrBONN_evm.TU.Sc2ySwM_344.2603 Anthoceros agrestis HOM05D004264 ORTHO05D004680 8.7e-07 58.2 209 21.1
C09p21940 Brassica napus HOM05D004264 ORTHO05D004680 1.5e-06 57.4 41 78.0
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 2.5e-06 56.6 107 33.6
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 4.3e-06 55.8 107 31.8


User provided reference genes

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