Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 2.5e-289 998.0 503 100.0
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 3.0e-274 948.0 505 95.6
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 7.9e-267 923.3 504 92.1
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 1.4e-266 922.5 505 92.1
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.6e-259 899.0 509 89.8
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 9.1e-255 883.2 510 88.8
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 2.6e-254 881.7 503 88.9
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 3.4e-241 838.2 512 87.5
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 4.4e-241 837.8 507 87.4
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 5.9e-238 827.4 509 86.4
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 7.5e-233 810.4 503 82.9
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 6.3e-232 807.4 508 84.8
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 3.1e-231 805.1 508 85.0
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 1.7e-229 799.3 511 83.8
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 2.3e-226 788.9 506 83.0
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 5.2e-226 787.7 506 82.8
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 2.6e-217 758.8 505 76.6
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 2.7e-214 748.8 506 76.9
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.2e-211 740.0 505 75.4
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 2.8e-211 738.8 505 74.9
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 3.6e-211 738.4 505 75.2
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.8e-210 736.1 507 75.5
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 3.9e-205 718.4 505 73.7
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 1.3e-200 703.4 506 71.7
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 4.1e-199 698.4 506 73.1
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 5.1e-197 691.4 504 71.0
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 6.6e-197 691.0 503 70.4
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.9e-196 689.5 508 69.7
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 4.3e-196 688.3 508 70.9
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 8.1e-195 684.1 507 71.0
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 4.0e-194 681.8 509 70.7
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 6.9e-194 681.0 507 69.2
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 8.9e-194 680.6 508 71.1
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 8.9e-194 680.6 502 70.7
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 3.4e-193 678.7 509 70.1
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.4e-193 678.7 502 69.5
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 2.2e-192 676.0 507 69.2
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 6.6e-189 664.5 502 69.1
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 2.1e-187 659.4 508 68.3
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.8e-186 656.4 502 68.3
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 6.9e-186 654.4 503 67.2
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 2.0e-185 652.9 509 67.6
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 4.5e-185 651.7 511 66.7
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 1.7e-184 649.8 511 68.5
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 2.9e-184 649.0 509 66.8
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 3.8e-184 648.7 508 67.3
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 6.4e-184 647.9 503 67.0
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 8.4e-184 647.5 498 68.1
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 8.4e-184 647.5 504 66.9
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.9e-183 646.4 505 66.9
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 3.2e-183 645.6 508 67.1
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 6.0e-182 641.3 512 65.0
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 1.5e-180 636.7 511 67.5
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 1.5e-180 636.7 497 67.0
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 1.5e-180 636.7 501 66.5
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 9.6e-180 634.0 507 66.1
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.6e-179 633.3 506 67.2
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.6e-179 633.3 507 66.5
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 2.8e-179 632.5 502 65.7
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 2.8e-179 632.5 507 65.5
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 4.8e-179 631.7 507 66.5
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 6.2e-179 631.3 507 66.7
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.3e-178 628.2 511 65.2
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 9.0e-178 627.5 506 65.8
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 1.5e-177 626.7 505 65.7
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 4.9e-176 621.7 503 65.4
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 6.4e-176 621.3 507 65.7
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 1.9e-175 619.8 506 65.2
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 3.2e-175 619.0 508 65.4
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.2e-174 617.1 511 64.8
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.2e-174 617.1 496 65.1
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 1.6e-174 616.7 527 64.7
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.6e-174 616.7 507 65.5
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 3.5e-174 615.5 504 66.3
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 4.6e-174 615.1 506 64.6
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 6.0e-174 614.8 506 64.8
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 1.0e-173 614.0 506 65.0
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 2.3e-173 612.8 507 65.7
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 8.7e-173 610.9 505 65.3
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.4e-170 602.8 510 63.5
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.2e-169 600.5 507 63.3
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 3.4e-169 599.0 509 64.4
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 1.0e-168 597.4 509 62.5
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 1.3e-168 597.0 504 64.9
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 3.8e-168 595.5 513 62.4
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 4.2e-167 592.0 524 61.5
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 7.9e-166 587.8 519 61.7
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 1.0e-165 587.4 520 62.3
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-165 587.0 504 63.5
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.5e-164 583.6 462 66.0
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 9.7e-164 580.9 509 61.5
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 9.7e-164 580.9 517 61.9
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.3e-163 580.5 511 62.0
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 1.0e-160 570.9 506 60.5
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.6e-158 563.5 471 63.7
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 2.1e-158 563.1 506 60.1
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.3e-157 560.5 515 60.2
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 3.7e-155 552.4 493 60.2
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 7.7e-153 544.7 517 57.8
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.7e-152 543.5 492 59.3
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 5.1e-149 531.9 522 56.9
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 3.3e-148 529.3 518 56.6
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 4.7e-142 508.8 450 61.3
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 3.3e-140 502.7 503 56.7
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 3.3e-140 502.7 515 56.1
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.6e-137 493.8 514 57.6
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 3.2e-135 486.1 516 55.6
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 4.2e-135 485.7 516 55.8
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 8.5e-128 461.5 482 55.2
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 1.0e-125 454.5 519 52.2
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 1.3e-120 437.6 506 51.4
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 7.5e-116 421.8 505 51.5
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 9.8e-116 421.4 518 48.8
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 2.8e-115 419.9 533 49.3
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.4e-109 401.0 306 65.0
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 6.0e-105 385.6 290 68.6
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 3.4e-100 369.8 508 45.3
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 6.0e-89 332.4 570 42.8
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.6e-86 324.3 507 43.2
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 2.0e-60 237.7 285 48.4
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 2.6e-52 210.7 340 40.3
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 1.4e-50 204.9 202 57.4
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 5.1e-40 169.9 279 39.8
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 4.2e-26 123.6 98 67.3
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 1.6e-25 121.7 539 26.5
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.8e-22 110.9 81 65.4
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 2.0e-20 104.8 528 27.5
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 1.1e-18 99.0 71 71.8
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.7e-14 85.1 56 71.4
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 4.1e-13 80.5 65 55.4
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.8e-11 73.9 63 55.6
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 2.7e-09 67.8 178 30.9
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.2e-08 63.5 71 56.3


User provided reference genes

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