Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.4e-261 905.2 540 100.0
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.1e-141 507.7 538 63.6
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 2.1e-124 450.3 308 78.6
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 1.5e-117 427.6 537 61.8
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 6.6e-110 402.1 529 51.6
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 5.8e-106 389.0 548 55.8
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 5.4e-104 382.5 552 55.4
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 3.9e-102 376.3 546 46.7
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 4.7e-100 369.4 543 54.5
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 3.1e-99 366.7 545 52.3
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 4.0e-99 366.3 524 57.8
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 7.8e-95 352.1 287 70.7
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 3.6e-92 343.2 538 46.1
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.1e-88 331.6 533 52.2
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 6.9e-83 312.4 528 49.1
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 2.2e-73 280.8 505 42.8
Sp7g09570 Schrenkiella parvula HOM05D009282 ORTHO05D003486 7.7e-50 202.6 132 84.1
SpUn0565_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 5.3e-35 153.3 214 69.2
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 9.4e-32 142.5 284 36.3
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 2.1e-31 141.4 286 35.3
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 1.4e-30 138.7 289 35.3
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 1.4e-30 138.7 276 35.9
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 8.8e-30 136.0 289 36.0
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.5e-29 135.2 288 34.7
Carub.0001s2100 Capsella rubella HOM05D012602 ORTHO05D003486 2.0e-29 134.8 254 39.8
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 3.4e-29 134.0 265 36.2
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 5.7e-29 133.3 260 36.5
AT1G21560 Arabidopsis thaliana HOM05D012602 ORTHO05D003486 5.9e-26 123.2 263 36.9
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 2.9e-25 120.9 257 34.2
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 8.5e-25 119.4 220 35.9
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 5.5e-24 116.7 270 35.9
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 1.6e-23 115.2 148 44.6
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 1.6e-23 115.2 200 37.0
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 3.6e-23 114.0 200 37.0
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 6.1e-23 113.2 277 31.8
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 1.4e-22 112.1 277 31.8
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 2.8e-20 104.4 304 30.9
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 3.7e-20 104.0 145 40.0
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 4.8e-20 103.6 178 42.7
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 5.4e-19 100.1 261 32.2
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 9.1e-19 99.4 261 32.2
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 9.1e-19 99.4 261 32.2
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 2.0e-18 98.2 158 38.6
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 2.0e-18 98.2 161 36.0
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 1.7e-17 95.1 162 37.7
Sp1g19100 Schrenkiella parvula HOM05D012602 ORTHO05D003486 2.3e-17 94.7 247 30.8
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 1.9e-16 91.7 178 36.0
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 2.5e-16 91.3 115 38.3
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 5.5e-16 90.1 143 37.8
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 1.2e-15 89.0 171 36.3
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 1.2e-15 89.0 162 38.3
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 1.6e-15 88.6 258 30.2
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 1.6e-15 88.6 258 30.2
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.6e-15 88.6 156 34.0
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 2.8e-15 87.8 116 39.7
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 3.6e-15 87.4 159 37.1
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 4.7e-15 87.0 98 41.8
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 8.0e-15 86.3 160 36.2
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 1.8e-14 85.1 266 29.7
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 2.3e-14 84.7 145 35.9
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 6.8e-14 83.2 120 41.7
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 6.8e-14 83.2 145 35.2
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 6.8e-14 83.2 145 35.2
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 8.9e-14 82.8 117 41.0
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 8.9e-14 82.8 146 38.4
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 1.2e-13 82.4 148 34.5
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 1.2e-13 82.4 145 35.2
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 1.2e-13 82.4 146 37.0
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 2.0e-13 81.6 154 35.1
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 5.7e-13 80.1 128 41.4
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 5.7e-13 80.1 195 29.2
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 9.8e-13 79.3 149 34.9
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 1.3e-12 79.0 149 34.9
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 2.8e-12 77.8 146 34.9
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 3.7e-12 77.4 172 36.0
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 3.7e-12 77.4 133 35.3
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 6.3e-12 76.6 153 35.3
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 8.3e-12 76.3 169 30.2
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 8.3e-12 76.3 136 37.5
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 8.3e-12 76.3 99 43.4
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 8.3e-12 76.3 134 35.8
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.1e-11 75.9 117 38.5
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 2.4e-11 74.7 113 36.3
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 4.1e-11 73.9 262 30.2
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 4.1e-11 73.9 183 31.7
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 5.4e-11 73.6 98 41.8
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 7.0e-11 73.2 137 34.3
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 9.2e-11 72.8 99 43.4
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.6e-10 72.0 99 43.4
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 1.6e-10 72.0 139 34.5
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 1.6e-10 72.0 105 39.0
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 1.6e-10 72.0 153 33.3
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 2.0e-10 71.6 171 34.5
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 2.7e-10 71.2 99 39.4
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 2.7e-10 71.2 156 34.0
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 3.5e-10 70.9 287 26.8
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 3.5e-10 70.9 148 33.1
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 4.5e-10 70.5 106 38.7
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 4.5e-10 70.5 117 37.6
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 5.9e-10 70.1 234 30.3
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 7.8e-10 69.7 127 38.6
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 1.0e-09 69.3 134 35.1
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.7e-09 68.6 148 37.2
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 1.7e-09 68.6 151 31.8
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 1.7e-09 68.6 164 33.5
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 1.7e-09 68.6 162 30.9
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 1.7e-09 68.6 95 38.9
PSO528G0175 Papaver somniferum HOM05D020877 ORTHO05D003486 2.3e-09 68.2 107 36.4
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 2.9e-09 67.8 122 35.2
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 2.9e-09 67.8 132 34.8
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 2.9e-09 67.8 100 38.0
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 3.9e-09 67.4 103 34.0
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 3.9e-09 67.4 182 30.8
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 5.0e-09 67.0 144 33.3
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 5.0e-09 67.0 156 31.4
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 6.6e-09 66.6 155 32.3
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 6.6e-09 66.6 112 33.9
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 6.6e-09 66.6 145 33.1
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 8.6e-09 66.2 150 34.0
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 8.6e-09 66.2 161 32.3
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 1.1e-08 65.9 141 36.2
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.1e-08 65.9 153 32.0
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 1.5e-08 65.5 99 41.4
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.5e-08 65.5 98 33.7
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 1.5e-08 65.5 98 33.7
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 2.5e-08 64.7 141 34.8
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 2.5e-08 64.7 132 34.8
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 3.3e-08 64.3 95 36.8
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 3.3e-08 64.3 134 31.3
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 4.3e-08 63.9 172 30.8
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 4.3e-08 63.9 199 32.2
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 5.6e-08 63.5 137 32.8
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 5.6e-08 63.5 109 33.9
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 5.6e-08 63.5 123 37.4
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 5.6e-08 63.5 148 33.1
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 7.3e-08 63.2 171 32.2
PSO170G3037 Papaver somniferum HOM05D020877 ORTHO05D003486 7.3e-08 63.2 155 29.7
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 9.5e-08 62.8 98 35.7
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 9.5e-08 62.8 169 32.0
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.2e-07 62.4 133 32.3
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 1.2e-07 62.4 120 35.8
Cc00_g10350 Coffea canephora HOM05D006236 ORTHO05D003486 1.6e-07 62.0 92 39.1
Pp3c14_13780 Physcomitrium patens HOM05D002377 ORTHO05D003486 1.6e-07 62.0 124 31.5
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 1.6e-07 62.0 105 32.4
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 2.1e-07 61.6 255 25.5
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 2.1e-07 61.6 170 33.5
SEGI_20168 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 2.1e-07 61.6 124 32.3
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 2.1e-07 61.6 98 37.8
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.8e-07 61.2 144 31.9
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 2.8e-07 61.2 138 29.7
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 2.8e-07 61.2 193 28.0
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 4.7e-07 60.5 255 25.5
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 6.1e-07 60.1 130 33.8
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 8.0e-07 59.7 170 31.8
Pp3c8_15980 Physcomitrium patens HOM05D006236 ORTHO05D003486 8.0e-07 59.7 99 36.4
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 1.4e-06 58.9 109 38.5
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 4.0e-06 57.4 108 36.1
arahy.Tifrunner.gnm1.ann1.3CVD71 Arachis hypogaea HOM05D024686 ORTHO05D003486 6.8e-06 56.6 99 38.4


User provided reference genes

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