Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 3.8e-76 288.1 146 100.0
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 1.9e-59 232.6 145 81.4
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 1.9e-56 222.6 143 77.6
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 2.0e-53 212.6 143 76.9
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 2.0e-53 212.6 143 76.9
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 7.6e-53 210.7 143 75.5
CARHR082280 Cardamine hirsuta HOM05D005992 ORTHO05D007476 5.1e-41 171.4 146 63.0
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 4.3e-40 168.3 142 64.8
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 1.3e-39 166.8 159 58.5
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 3.1e-38 162.2 140 59.3
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 6.9e-38 161.0 147 61.9
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 9.0e-38 160.6 151 59.6
BcaC05g29553 Brassica carinata HOM05D005992 ORTHO05D007476 8.2e-31 137.5 101 73.3
AT3G07580 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 1.1e-30 137.1 117 62.4
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 1.5e-29 133.3 108 61.1
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 2.5e-27 125.9 108 58.3
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 1.1e-24 117.1 106 59.4
Aa31LG5G18140 Aethionema arabicum HOM05D005992 ORTHO05D007476 1.5e-24 116.7 89 59.6
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 2.0e-21 106.3 163 41.1
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 2.1e-18 96.3 153 41.2
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 2.3e-17 92.8 141 40.4
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 1.1e-16 90.5 166 38.6
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 1.1e-16 90.5 161 37.9
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.5e-16 90.1 152 38.8
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.5e-16 90.1 152 40.1
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 2.6e-16 89.4 165 38.2
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 3.3e-16 89.0 159 38.4
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 3.3e-16 89.0 152 38.8
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 4.4e-16 88.6 152 38.8
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 4.4e-16 88.6 143 42.7
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 4.4e-16 88.6 145 41.4
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 5.7e-16 88.2 160 39.4
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 7.4e-16 87.8 149 40.9
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 7.4e-16 87.8 141 38.3
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 9.7e-16 87.4 165 37.6
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 9.7e-16 87.4 165 37.6
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 1.3e-15 87.0 131 45.8
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 1.3e-15 87.0 163 38.0
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.3e-15 87.0 141 38.3
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 1.7e-15 86.7 149 38.9
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 1.7e-15 86.7 154 39.6
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 1.7e-15 86.7 154 40.3
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 2.2e-15 86.3 144 43.8
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.2e-15 86.3 152 37.5
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 4.8e-15 85.1 171 36.8
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 4.8e-15 85.1 171 36.8
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 4.8e-15 85.1 143 38.5
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 8.2e-15 84.3 151 39.7
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 1.4e-14 83.6 166 42.8
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 1.8e-14 83.2 138 39.9
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 1.8e-14 83.2 151 38.4
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 2.4e-14 82.8 162 37.7
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 3.1e-14 82.4 166 38.0
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 3.1e-14 82.4 163 38.0
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.2e-13 80.5 136 42.6
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 3.5e-13 79.0 163 32.5
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 5.9e-13 78.2 152 37.5
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 7.7e-13 77.8 158 36.1
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.3e-12 77.0 153 35.3
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 2.9e-12 75.9 98 39.8
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 2.9e-12 75.9 156 38.5
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 3.8e-12 75.5 148 36.5
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 3.8e-12 75.5 121 40.5
BcaC04g23782 Brassica carinata HOM05D005992 ORTHO05D007476 5.0e-12 75.1 77 51.9
C09p04700 Brassica napus HOM05D005992 ORTHO05D007476 5.0e-12 75.1 77 51.9
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 5.0e-12 75.1 105 41.0
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 5.0e-12 75.1 162 35.2
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 5.0e-12 75.1 155 35.5
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 6.5e-12 74.7 165 37.0
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 6.5e-12 74.7 125 39.2
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 6.5e-12 74.7 125 39.2
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 8.5e-12 74.3 95 44.2
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 8.5e-12 74.3 153 34.6
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 8.5e-12 74.3 136 39.0
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 8.5e-12 74.3 136 39.0
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 8.5e-12 74.3 154 34.4
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 1.1e-11 73.9 142 38.7
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 1.1e-11 73.9 141 36.2
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 1.1e-11 73.9 143 36.4
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 1.1e-11 73.9 124 38.7
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 1.9e-11 73.2 151 36.4
Sabra14G0132200 Salix brachista HOM05D005992 ORTHO05D007476 1.9e-11 73.2 100 42.0
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 7.2e-11 71.2 97 44.3
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 9.4e-11 70.9 156 35.9
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 1.6e-10 70.1 149 32.9
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 1.6e-10 70.1 115 41.7
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 1.6e-10 70.1 127 40.2
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 2.1e-10 69.7 153 32.7
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 3.6e-10 68.9 127 38.6
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 3.6e-10 68.9 137 32.1
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 8.0e-10 67.8 123 36.6
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.4e-09 67.0 96 42.7
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 1.8e-09 66.6 134 38.8
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 3.0e-09 65.9 68 44.1
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 5.2e-09 65.1 163 33.7
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 6.7e-09 64.7 153 34.6
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 8.8e-09 64.3 157 35.0
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 2.6e-08 62.8 165 33.3
arahy.Tifrunner.gnm1.ann1.DJH8FA Arachis hypogaea HOM05D005992 ORTHO05D007476 7.5e-08 61.2 159 32.7
Thhalv10005690m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 7.5e-08 61.2 71 53.5
A09p04390 Brassica napus HOM05D005992 ORTHO05D007476 1.7e-07 60.1 42 66.7
BraA09t36076Z Brassica rapa HOM05D005992 ORTHO05D007476 1.7e-07 60.1 42 66.7
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 1.7e-07 60.1 142 35.2
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 2.2e-07 59.7 120 39.2
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 2.8e-07 59.3 112 41.1
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 4.8e-07 58.5 148 33.8
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 8.2e-07 57.8 148 31.8
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 1.1e-06 57.4 152 34.2
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 1.8e-06 56.6 88 36.4
Ca_15291_v3 Cicer arietinum L. HOM05D005992 ORTHO05D007476 3.1e-06 55.8 144 34.7
Actinidia23817 Actinidia chinensis HOM05D005992 ORTHO05D007476 4.1e-06 55.5 82 34.1
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 4.1e-06 55.5 110 39.1


User provided reference genes

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