Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 9.1e-133 477.2 305 100.0
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 3.4e-119 432.2 306 87.9
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 6.2e-105 384.8 310 78.4
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.4e-104 383.6 310 78.7
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 2.0e-103 379.8 311 79.7
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 4.1e-101 372.1 324 69.8
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 3.5e-100 369.0 304 79.6
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.2e-97 360.5 316 75.3
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 2.3e-96 356.3 307 75.9
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 4.4e-95 352.1 304 75.7
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 2.1e-92 343.2 305 76.1
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 3.5e-92 342.4 302 72.2
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 2.0e-87 326.6 280 76.8
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 9.9e-87 324.3 309 67.0
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 2.2e-86 323.2 316 68.4
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 8.4e-86 321.2 310 69.4
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.9e-85 320.1 311 66.2
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 2.4e-85 319.7 316 73.7
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 1.1e-82 310.8 314 65.3
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 1.9e-82 310.1 309 65.7
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 9.6e-82 307.8 303 63.7
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.1e-81 306.6 303 63.7
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 1.1e-80 304.3 310 66.5
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 2.4e-80 303.1 303 63.0
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.2e-80 302.0 305 66.2
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 2.4e-77 293.1 298 66.1
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 3.5e-76 289.3 299 68.2
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 6.6e-75 285.0 295 66.8
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.1e-74 284.3 304 62.8
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 9.6e-74 281.2 297 63.3
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 2.1e-73 280.0 306 63.7
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 1.4e-72 277.3 309 62.5
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 1.4e-72 277.3 322 57.8
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 1.8e-72 276.9 300 63.3
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 2.4e-72 276.6 303 67.7
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 5.3e-72 275.4 307 63.5
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 6.9e-72 275.0 307 67.1
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 9.0e-72 274.6 309 61.8
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.4e-71 272.7 307 58.6
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 3.4e-71 272.7 307 58.6
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 4.5e-71 272.3 301 62.1
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 4.5e-71 272.3 310 61.6
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 5.8e-71 271.9 307 62.9
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 5.8e-71 271.9 304 62.8
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.2e-70 270.0 304 63.2
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 6.4e-70 268.5 301 60.5
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 6.4e-70 268.5 305 63.3
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 1.4e-69 267.3 300 63.0
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 3.2e-69 266.2 309 57.6
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 3.2e-69 266.2 308 57.8
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 5.4e-69 265.4 318 60.4
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 7.1e-69 265.0 306 62.4
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.3e-69 264.6 305 59.7
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 2.1e-68 263.5 256 71.1
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 3.5e-68 262.7 306 61.8
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 7.9e-68 261.5 308 61.7
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.3e-67 260.8 311 59.8
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 1.3e-67 260.8 302 57.9
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.3e-67 260.8 300 58.0
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 1.8e-67 260.4 309 63.8
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 5.1e-67 258.8 301 61.8
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 6.7e-67 258.5 302 59.6
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 6.7e-67 258.5 289 63.3
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 6.7e-67 258.5 304 59.2
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 8.7e-67 258.1 298 64.8
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.9e-66 256.9 320 61.2
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 1.9e-66 256.9 304 58.6
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 3.3e-66 256.1 292 63.0
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 7.4e-66 255.0 306 60.1
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 1.3e-65 254.2 289 54.7
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.6e-65 253.8 329 54.1
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 3.7e-65 252.7 302 65.2
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 4.8e-65 252.3 303 64.4
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 4.8e-65 252.3 303 62.0
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 6.2e-65 251.9 303 64.4
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 6.2e-65 251.9 322 62.4
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.1e-64 251.1 300 61.0
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 1.4e-64 250.8 310 61.9
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.4e-64 250.8 311 59.8
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 3.1e-64 249.6 307 57.0
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 3.1e-64 249.6 302 64.9
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 5.3e-64 248.8 309 62.5
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 9.0e-64 248.1 313 62.6
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 3.4e-63 246.1 311 59.2
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 3.4e-63 246.1 308 58.8
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 9.9e-63 244.6 313 55.9
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 9.9e-63 244.6 317 56.5
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.3e-62 244.2 299 62.9
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.3e-62 244.2 299 57.9
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.7e-62 243.8 296 58.1
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 2.2e-62 243.4 301 59.1
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 2.2e-62 243.4 308 56.2
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 2.2e-62 243.4 308 56.2
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 3.8e-62 242.7 307 60.3
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 2.4e-61 240.0 311 55.0
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 2.4e-61 240.0 311 55.0
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 7.1e-61 238.4 302 58.9
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 9.3e-61 238.0 313 53.7
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 9.3e-61 238.0 307 58.6
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 2.1e-60 236.9 345 55.7
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.7e-60 236.5 306 56.2
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 2.7e-60 236.5 304 61.8
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 2.7e-60 236.5 309 55.0
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 3.5e-60 236.1 301 58.1
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 4.6e-60 235.7 148 81.8
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 4.6e-60 235.7 310 55.5
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 2.3e-59 233.4 322 57.8
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.3e-59 233.4 302 51.7
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 2.3e-59 233.4 303 60.4
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 3.0e-59 233.0 321 57.9
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 5.1e-59 232.3 303 58.4
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 6.7e-59 231.9 308 55.2
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 8.7e-59 231.5 315 57.5
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.9e-58 230.3 317 55.8
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 1.3e-57 227.6 306 58.5
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 1.6e-57 227.3 310 53.5
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.1e-56 224.6 298 60.7
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 9.0e-56 221.5 313 60.7
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.0e-55 220.3 325 58.2
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 3.4e-55 219.5 308 59.1
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 4.5e-55 219.2 329 56.2
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 5.8e-55 218.8 320 55.6
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.7e-54 217.2 320 55.6
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 1.7e-54 217.2 301 57.8
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 8.4e-54 214.9 306 55.9
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 9.3e-53 211.5 297 52.5
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 1.8e-51 207.2 268 59.7
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 2.3e-51 206.8 294 50.0
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 8.7e-51 204.9 282 59.6
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 4.3e-50 202.6 304 54.6
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 7.4e-50 201.8 309 59.5
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 7.4e-50 201.8 311 51.8
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 1.6e-49 200.7 219 69.4
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 2.1e-49 200.3 401 44.1
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 3.7e-49 199.5 294 54.1
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 1.1e-48 198.0 303 54.1
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 2.4e-48 196.8 219 61.6
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 4.1e-48 196.1 315 49.2
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 3.8e-46 189.5 226 59.3
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 3.2e-45 186.4 303 47.5
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 2.1e-44 183.7 220 70.5
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 1.0e-43 181.4 294 53.7
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 3.7e-41 172.9 303 48.5
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 3.7e-41 172.9 225 53.8
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 3.1e-40 169.9 222 60.8
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 5.3e-40 169.1 309 44.3
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 2.9e-38 163.3 314 47.1
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.1e-37 161.4 304 44.1
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 4.2e-37 159.5 294 50.3
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 5.5e-37 159.1 102 76.5
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.6e-36 157.5 202 68.3
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 4.4e-34 149.4 249 61.4
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 1.2e-31 141.4 74 91.9
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.2e-28 131.3 317 42.9
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 1.8e-27 127.5 304 41.8
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 3.9e-27 126.3 128 53.9
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 1.1e-26 124.8 202 54.5
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 2.0e-26 124.0 102 61.8
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 5.7e-26 122.5 325 43.7
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 4.1e-24 116.3 341 40.5
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 3.5e-23 113.2 100 62.0
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.3e-22 111.3 220 49.5
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.6e-20 104.4 115 57.4
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 4.8e-17 92.8 94 55.3
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 6.3e-17 92.4 105 52.4
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 8.2e-17 92.0 92 54.3
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 2.4e-16 90.5 77 57.1
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 1.7e-14 84.3 64 59.4
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 5.5e-13 79.3 226 36.3
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 7.2e-13 79.0 94 53.2
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 8.0e-12 75.5 306 36.3
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 9.8e-10 68.6 77 53.2
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 6.3e-09 65.9 57 54.4
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.1e-08 65.1 69 49.3
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 1.8e-08 64.3 319 27.9
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 4.1e-08 63.2 64 50.0
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.6e-07 61.2 92 42.4
FAN06G2565 Fragaria x ananassa HOM05D003822 ORTHO05D001690 7.7e-07 58.9 92 58.7
SEGI_02285 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 7.7e-07 58.9 123 35.8


User provided reference genes

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