Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g06440 Schrenkiella parvula HOM05D006558 ORTHO05D008424 0.0e+00 1399.4 700 100.0
Thhalv10020176m.g Eutrema salsugineum HOM05D006558 ORTHO05D008424 0.0e+00 1204.1 701 86.9
AL3G18860 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 0.0e+00 1162.1 701 83.7
BraA05t22799Z Brassica rapa HOM05D006558 ORTHO05D008424 0.0e+00 1154.0 720 81.7
AT3G07530 Arabidopsis thaliana HOM05D006558 ORTHO05D008424 0.0e+00 1149.4 701 83.0
BolC5t34633H Brassica oleracea HOM05D006558 ORTHO05D008424 0.0e+00 1146.7 713 82.2
A05p40680 Brassica napus HOM05D006558 ORTHO05D008424 0.0e+00 1125.2 683 83.3
C05p59790 Brassica napus HOM05D006558 ORTHO05D008424 0.0e+00 1123.6 683 83.6
Carub.0003s0708 Capsella rubella HOM05D006558 ORTHO05D008424 0.0e+00 1122.1 702 80.6
BcaC05g29545 Brassica carinata HOM05D006558 ORTHO05D008424 0.0e+00 1114.0 702 81.3
Aa31LG10G8390 Aethionema arabicum HOM05D006558 ORTHO05D008424 4.4e-300 1034.2 703 75.7
THA.LOC104826716 Tarenaya hassleriana HOM05D006558 ORTHO05D008424 1.2e-257 893.3 709 63.9
CARHR082190 Cardamine hirsuta HOM05D006558 ORTHO05D008424 5.5e-250 867.8 509 84.1
Gohir.D06G185500 Gossypium hirsutum HOM05D006558 ORTHO05D008424 1.2e-223 780.4 701 56.9
CiPaw.13G011700 Carya illinoinensis HOM05D006558 ORTHO05D008424 2.2e-222 776.2 703 55.5
Gorai.010G217100 Gossypium raimondii HOM05D006558 ORTHO05D008424 9.2e-221 770.8 701 56.5
QL04p014186 Quercus lobata HOM05D006558 ORTHO05D008424 3.5e-220 768.8 709 54.7
TWI15G0624 Tripterygium wilfordii HOM05D006558 ORTHO05D008424 1.2e-217 760.4 708 53.7
TAR633G1807 Trochodendron aralioides HOM05D006558 ORTHO05D008424 5.2e-216 755.0 714 54.9
Prupe.2G031500 Prunus persica HOM05D006558 ORTHO05D008424 8.9e-216 754.2 711 53.3
GSVIVG01000827001 Vitis vinifera HOM05D006558 ORTHO05D008424 3.4e-215 752.3 701 53.8
Duzib106G1800 Durio zibethinus HOM05D006558 ORTHO05D008424 1.8e-213 746.5 707 54.0
FvH4_7g02620 Fragaria vesca HOM05D006558 ORTHO05D008424 2.3e-208 729.6 712 53.1
RcHm_v2.0_Chr1g0321321 Rosa chinensis HOM05D006558 ORTHO05D008424 3.4e-207 725.7 711 53.4
Manes.12G022900 Manihot esculenta HOM05D006558 ORTHO05D008424 1.3e-206 723.8 708 51.7
Ciclev10033512m.g Citrus clementina HOM05D006558 ORTHO05D008424 1.7e-206 723.4 700 51.6
Actinidia06260 Actinidia chinensis HOM05D006558 ORTHO05D008424 4.9e-206 721.8 706 54.0
FAN01G2130 Fragaria x ananassa HOM05D006558 ORTHO05D008424 4.9e-206 721.8 727 52.3
FAN03G0498 Fragaria x ananassa HOM05D006558 ORTHO05D008424 4.9e-206 721.8 727 52.3
Potri.004G236000 Populus trichocarpa HOM05D006558 ORTHO05D008424 3.6e-201 705.7 703 52.1
Ca_25408_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 6.8e-200 701.4 701 49.6
Rhsim07G0065000 Rhododendron simsii HOM05D006558 ORTHO05D008424 4.9e-198 695.3 759 49.5
Psat5g217480 Pisum sativum HOM05D006558 ORTHO05D008424 4.1e-197 692.2 701 50.4
Glyma.11G153500 Glycine max HOM05D006558 ORTHO05D008424 1.6e-196 690.3 710 50.0
Lj3g0026268 Lotus japonicus HOM05D006558 ORTHO05D008424 1.7e-195 686.8 715 48.7
Nn7g37154 Nelumbo nucifera HOM05D006558 ORTHO05D008424 4.3e-194 682.2 712 49.4
CANSAT78G0292 Cannabis sativa HOM05D006558 ORTHO05D008424 1.6e-193 680.2 702 50.6
HanXRQChr02g0050141 Helianthus annuus HOM05D006558 ORTHO05D008424 1.6e-193 680.2 707 49.8
Phvul.002G285400 Phaseolus vulgaris HOM05D006558 ORTHO05D008424 6.2e-193 678.3 715 48.8
TPR.G9868 Trifolium pratense HOM05D006558 ORTHO05D008424 1.2e-191 674.1 695 48.8
CANSAT78G2064 Cannabis sativa HOM05D006558 ORTHO05D008424 4.4e-191 672.2 703 50.6
VMungo0251G1905 Vigna mungo HOM05D006558 ORTHO05D008424 4.4e-191 672.2 708 49.0
Aqoxy2G03825 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 2.2e-190 669.8 714 48.7
Aqoxy5G01848 Aquilegia oxysepala HOM05D006558 ORTHO05D008424 3.7e-190 669.1 711 48.5
MBI13_g29518_MAGBIO Magnolia biondii HOM05D006558 ORTHO05D008424 4.9e-190 668.7 712 47.8
Sc11g0006630 Simmondsia chinensis HOM05D006558 ORTHO05D008424 6.4e-190 668.3 703 49.1
Cc07_g20890 Coffea canephora HOM05D006558 ORTHO05D008424 3.2e-189 666.0 710 47.2
PGR031G1286 Punica granatum HOM05D006558 ORTHO05D008424 1.3e-187 660.6 712 47.2
MELO3C016629.2 Cucumis melo HOM05D006558 ORTHO05D008424 3.0e-187 659.4 705 49.1
CsaV3_5G011280 Cucumis sativus L. HOM05D006558 ORTHO05D008424 1.1e-186 657.5 705 48.8
ECA248G1764 Erigeron canadensis HOM05D006558 ORTHO05D008424 1.5e-186 657.1 705 48.7
Lalb_Chr25g0282291 Lupinus albus HOM05D006558 ORTHO05D008424 2.5e-186 656.4 706 47.5
SHI03978 Sapria himalayana HOM05D006558 ORTHO05D005892 4.3e-186 655.6 704 46.7
Sed0005595 Sechium edule HOM05D006558 ORTHO05D008424 7.3e-186 654.8 701 48.4
Peaxi162Scf00516g00328 Petunia axillaris HOM05D006558 ORTHO05D008424 1.6e-185 653.7 693 48.9
Lj9C648T3 Lonicera japonica HOM05D006558 ORTHO05D008424 4.0e-184 649.0 675 50.8
SGA_v2.0_scaffold232G43518 Striga asiatica HOM05D006558 ORTHO05D008424 8.9e-184 647.9 709 47.2
Sopen03g028230 Solanum pennellii HOM05D006558 ORTHO05D008424 4.9e-182 642.1 700 48.4
Oeu006113.1 Olea europaea HOM05D006558 ORTHO05D008424 1.4e-181 640.6 704 47.2
Ca_25460_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 3.2e-181 639.4 661 48.4
Solyc03g097460.3 Solanum lycopersicum HOM05D006558 ORTHO05D008424 9.3e-181 637.9 696 48.4
AL908U10010 Arabidopsis lyrata HOM05D006558 ORTHO05D008424 2.7e-180 636.3 385 84.4
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 4.6e-180 635.6 698 48.7
AUR62026839 Chenopodium quinoa HOM05D006558 ORTHO05D008424 4.6e-180 635.6 704 48.4
AUR62037214 Chenopodium quinoa HOM05D006558 ORTHO05D008424 4.6e-180 635.6 706 48.3
Nitab4.5_0002530g0080 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.1e-176 624.4 702 47.3
Haze_03062 Corylus avellana HOM05D006558 ORTHO05D008424 2.4e-176 623.2 610 52.0
CAN.G732.14 Capsicum annuum HOM05D006558 ORTHO05D008424 9.0e-176 621.3 695 47.8
Dinv00935 Davidia involucrata HOM05D006558 ORTHO05D008424 1.2e-172 610.9 591 55.2
Nitab4.5_0000021g1060 Nicotiana tabacum HOM05D006558 ORTHO05D008424 1.9e-165 587.0 736 43.8
Lsat_1_v5_gn_1_114420 Lactuca sativa HOM05D006558 ORTHO05D008424 1.2e-164 584.3 698 45.4
Psat5g217880 Pisum sativum HOM05D006558 ORTHO05D008424 3.9e-163 579.3 508 54.9
arahy.Tifrunner.gnm1.ann1.898F3G Arachis hypogaea HOM05D006558 ORTHO05D008424 1.1e-162 577.8 706 44.5
HPP92_012099 Vanilla planifolia HOM05D006558 ORTHO05D008424 3.3e-162 576.2 705 44.0
PSO675G8563 Papaver somniferum HOM05D006558 ORTHO05D008424 3.7e-161 572.8 708 44.2
Ah.10g030940 Amaranthus hybridus HOM05D006558 ORTHO05D008424 2.0e-159 567.0 605 48.1
DCAR_010372 Daucus carota HOM05D006558 ORTHO05D008424 1.9e-154 550.4 516 51.7
Dinv09252 Davidia involucrata HOM05D006558 ORTHO05D008424 1.7e-150 537.3 541 54.0
Cpa.g.sc96.50 Carica papaya HOM05D006558 ORTHO05D008424 8.5e-150 535.0 470 56.4
Atru.chr11.2434 Acer truncatum HOM05D006558 ORTHO05D008424 4.2e-149 532.7 462 55.4
Thecc.10G170400 Theobroma cacao HOM05D006558 ORTHO05D008424 1.0e-147 528.1 443 58.7
Migut.K00935 Erythranthe guttata HOM05D006558 ORTHO05D008424 1.9e-133 480.7 609 45.2
MD00G1214500 Malus domestica HOM05D006558 ORTHO05D008424 3.2e-133 479.9 402 58.5
arahy.Tifrunner.gnm1.ann1.S73JQ5 Arachis hypogaea HOM05D006558 ORTHO05D008424 5.9e-127 459.1 560 44.1
Sabra01G0180400 Salix brachista HOM05D006558 ORTHO05D008424 1.5e-125 454.5 442 52.5
unitig_32.g11142 Utricularia gibba HOM05D006558 ORTHO05D008424 7.2e-125 452.2 620 40.6
vmacro13739 Vaccinium macrocarpon HOM05D006558 ORTHO05D008424 4.0e-123 446.4 484 50.4
Gohir.A06G175900 Gossypium hirsutum HOM05D006558 ORTHO05D008424 2.4e-120 437.2 435 54.7
Hund15718 Selenicereus undatus HOM05D006558 ORTHO05D008424 3.8e-118 429.9 648 40.4
PGSC0003DMG400031735 Solanum tuberosum HOM05D006558 ORTHO05D008424 8.5e-118 428.7 492 47.4
ATR1093G023 Amborella trichopoda HOM05D006558 ORTHO05D008424 1.5e-114 417.9 552 41.8
Medtr3g019010 Medicago truncatula HOM05D006558 ORTHO05D008424 2.0e-114 417.5 532 44.0
Zm00001eb143980 Zea mays HOM05D006558 ORTHO05D008424 3.0e-107 393.7 498 41.8
CDE05G1491 Ceratophyllum demersum HOM05D006558 ORTHO05D008424 4.4e-98 363.2 668 34.7
Mapoly0001s0524 Marchantia polymorpha HOM05D006558 ORTHO05D008424 4.1e-96 356.7 840 29.8
AagrBONN_evm.TU.Sc2ySwM_228.965 Anthoceros agrestis HOM05D006558 ORTHO05D008424 5.2e-91 339.7 774 30.1
Pp3c9_4730 Physcomitrium patens HOM05D006558 ORTHO05D008424 4.6e-87 326.6 826 29.3
SMO144G0043 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 5.6e-85 319.7 697 31.1
SMO229G0006 Selaginella moellendorffii HOM05D006558 ORTHO05D008424 5.6e-85 319.7 697 31.1
Eucgr.H05132 Eucalyptus grandis HOM05D006558 ORTHO05D008424 1.3e-78 298.5 701 32.0
Gohir.A06G175902 Gossypium hirsutum HOM05D006558 ORTHO05D008424 3.6e-76 290.4 230 59.6
COL.COLO4_35437 Corchorus olitorius HOM05D006558 ORTHO05D008424 1.2e-74 285.4 595 32.8
SEGI_06522 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.4e-72 278.5 404 39.1
MD07G1035100 Malus domestica HOM05D006558 ORTHO05D008424 3.5e-63 247.3 209 57.4
Atru.chr11.2476 Acer truncatum HOM05D006558 ORTHO05D008424 3.1e-59 234.2 186 58.1
Eucgr.H05138 Eucalyptus grandis HOM05D006558 ORTHO05D008424 2.7e-47 194.5 323 37.5
Cpa.g.sc96.48 Carica papaya HOM05D006558 ORTHO05D008424 1.3e-44 185.7 221 47.5
SEGI_00327 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 8.4e-41 172.9 159 49.1
CBR_g72661 Chara braunii HOM05D000019 ORTHO05D000353 9.7e-37 159.5 306 34.3
Cc02_g29630 Coffea canephora HOM05D006558 ORTHO05D008424 5.3e-35 153.7 131 53.4
Eucgr.H05129 Eucalyptus grandis HOM05D006558 ORTHO05D008424 3.2e-32 144.4 146 47.3
Atru.chr11.2433 Acer truncatum HOM05D006558 ORTHO05D008424 7.9e-31 139.8 148 48.6
SGA_v2.0_scaffold2G00943 Striga asiatica HOM05D006558 ORTHO05D008424 3.7e-28 131.0 202 43.6
MD00G1214400 Malus domestica HOM05D006558 ORTHO05D008424 1.8e-27 128.6 110 55.5
Os03g0243200 Oryza sativa ssp. japonica HOM05D006558 ORTHO05D008424 3.1e-27 127.9 207 36.7
DCAR_010374 Daucus carota HOM05D006558 ORTHO05D008424 3.4e-26 124.4 192 38.0
Medtr3g019025 Medicago truncatula HOM05D006558 ORTHO05D008424 1.6e-23 115.5 89 57.3
SEGI_36037 Sequoiadendron giganteum HOM05D006558 ORTHO05D008424 1.4e-22 112.5 247 29.6
MD07G1035200 Malus domestica HOM05D006558 ORTHO05D008424 3.8e-17 94.4 132 40.9
Ca_02010_v3 Cicer arietinum L. HOM05D006558 ORTHO05D008424 4.1e-11 74.3 59 52.5
Medtr3g019030 Medicago truncatula HOM05D006558 ORTHO05D034019 4.1e-11 74.3 43 72.1
CAN.G261.15 Capsicum annuum HOM05D003152 ORTHO05D034019 1.6e-10 72.4 44 61.4


User provided reference genes

Program Settings