Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 2.9e-92 342.4 252 100.0
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 5.3e-86 321.6 253 95.7
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 3.2e-83 312.4 253 80.6
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 7.1e-83 311.2 253 78.7
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 7.9e-82 307.8 252 79.4
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 2.5e-80 302.8 253 89.3
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 8.2e-79 297.7 252 78.6
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.4e-78 297.0 252 79.8
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.4e-78 297.0 252 79.8
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 1.8e-78 296.6 252 77.4
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 4.5e-77 292.0 253 74.7
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 2.2e-76 289.7 252 75.4
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 1.1e-62 244.2 247 67.2
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 1.1e-62 244.2 247 68.4
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 1.4e-62 243.8 250 70.4
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 8.8e-49 198.0 250 62.8
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.5e-48 197.2 255 58.4
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.6e-48 196.4 259 62.2
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 1.8e-46 190.3 259 55.6
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 3.1e-46 189.5 249 58.2
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 7.0e-46 188.3 255 65.9
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 7.0e-46 188.3 268 62.7
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 2.0e-45 186.8 263 56.3
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 5.9e-45 185.3 257 62.6
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 1.7e-44 183.7 272 65.1
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 1.7e-44 183.7 272 65.1
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 1.7e-44 183.7 251 56.2
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 2.2e-44 183.3 246 56.5
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 2.2e-44 183.3 246 52.4
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 2.9e-44 183.0 250 54.8
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 3.8e-44 182.6 248 51.2
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 5.0e-44 182.2 249 61.4
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.1e-43 181.0 253 66.8
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 1.1e-43 181.0 246 57.3
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 1.9e-43 180.3 274 60.6
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 1.9e-43 180.3 274 60.6
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 5.5e-43 178.7 256 50.0
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 9.4e-43 177.9 233 58.8
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 9.4e-43 177.9 238 63.9
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 1.2e-42 177.6 244 61.5
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 1.6e-42 177.2 237 50.2
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.6e-42 177.2 255 50.2
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 2.7e-42 176.4 253 50.2
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.7e-42 176.4 255 49.8
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.7e-42 176.4 240 51.2
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.6e-42 176.0 255 49.8
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 3.6e-42 176.0 233 53.2
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 3.6e-42 176.0 254 50.8
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 4.7e-42 175.6 267 52.1
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 4.7e-42 175.6 243 48.6
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 4.7e-42 175.6 259 64.1
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 6.1e-42 175.3 248 49.2
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 1.4e-41 174.1 244 68.0
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.8e-41 173.7 241 55.6
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 2.3e-41 173.3 233 52.4
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 5.2e-41 172.2 238 68.5
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 6.8e-41 171.8 251 61.8
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 8.8e-41 171.4 238 47.5
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 1.2e-40 171.0 251 52.2
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.0e-40 170.2 251 61.4
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 2.0e-40 170.2 237 69.6
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 3.4e-40 169.5 238 50.0
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 7.5e-40 168.3 260 44.2
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 1.7e-39 167.2 242 50.4
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 3.7e-39 166.0 241 47.7
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 3.7e-39 166.0 252 48.0
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 4.8e-39 165.6 255 48.6
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 8.3e-39 164.9 244 65.6
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 8.3e-39 164.9 247 48.2
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 1.1e-38 164.5 246 54.9
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.8e-38 163.7 210 51.4
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 1.8e-38 163.7 242 56.2
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 2.4e-38 163.3 249 48.2
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 4.1e-38 162.5 250 62.8
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 4.1e-38 162.5 252 44.4
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 7.0e-38 161.8 249 51.4
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 9.1e-38 161.4 250 48.0
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.2e-37 161.0 240 50.0
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.6e-37 160.6 246 57.3
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 3.5e-37 159.5 233 47.6
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 4.5e-37 159.1 235 48.1
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 4.5e-37 159.1 261 49.0
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.5e-37 159.1 252 47.6
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 5.9e-37 158.7 251 51.4
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 5.9e-37 158.7 249 57.4
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 1.0e-36 157.9 245 45.7
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.7e-36 157.1 247 66.4
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 2.9e-36 156.4 248 45.2
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 3.8e-36 156.0 233 47.6
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 6.6e-36 155.2 251 49.8
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 8.6e-36 154.8 249 45.0
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 1.1e-35 154.5 240 55.8
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.1e-35 154.5 240 49.6
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 1.5e-35 154.1 245 61.6
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 3.3e-35 152.9 254 42.1
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 3.3e-35 152.9 249 45.8
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 7.2e-35 151.8 251 48.6
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 1.2e-34 151.0 249 45.0
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.6e-34 150.6 253 46.2
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.6e-34 150.6 249 45.0
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 2.1e-34 150.2 240 55.8
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 3.6e-34 149.4 270 54.8
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 3.6e-34 149.4 234 50.4
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.0e-33 147.9 267 44.2
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.4e-33 147.5 271 46.1
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.4e-33 147.5 249 44.6
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.8e-33 147.1 237 42.2
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.8e-33 147.1 249 49.4
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 8.9e-33 144.8 240 50.0
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.2e-32 144.4 253 39.9
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 1.5e-32 144.1 249 45.4
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 1.5e-32 144.1 150 50.7
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 2.0e-32 143.7 252 44.8
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 2.6e-32 143.3 182 55.5
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 3.4e-32 142.9 251 42.2
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 9.8e-32 141.4 157 66.2
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 3.7e-31 139.4 240 50.8
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 6.3e-31 138.7 256 50.8
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 1.1e-30 137.9 265 49.1
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 5.4e-30 135.6 228 55.3
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 7.0e-30 135.2 250 38.8
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 2.7e-29 133.3 232 38.4
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 5.0e-28 129.0 256 49.2
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 5.0e-28 129.0 158 48.1
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 1.1e-27 127.9 254 42.9
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 2.5e-27 126.7 269 36.4
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 1.6e-26 124.0 182 42.3
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 8.0e-26 121.7 237 38.0
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 1.7e-23 114.0 203 51.2
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 2.7e-21 106.7 161 38.5
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 2.5e-19 100.1 232 35.8
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 3.3e-19 99.8 242 45.0
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 5.6e-19 99.0 185 42.7
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 2.1e-18 97.1 153 41.2
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 5.8e-16 89.0 91 51.6
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 9.8e-16 88.2 162 36.4
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.4e-14 84.3 87 51.7
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 1.9e-14 84.0 161 38.5
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 4.3e-11 72.8 266 42.1
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 9.5e-11 71.6 34 88.2
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 6.2e-10 68.9 150 50.7
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 1.2e-08 64.7 122 39.3
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 1.7e-07 60.8 145 33.8


User provided reference genes

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