Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g04670 Schrenkiella parvula HOM05D004470 ORTHO05D005079 2.3e-57 225.3 112 100.0
Thhalv10021798m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 6.5e-52 207.2 112 92.0
AL3G16550 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.2e-50 203.0 112 91.1
AT3G05810 Arabidopsis thaliana HOM05D004470 ORTHO05D005079 4.6e-50 201.1 113 91.2
Carub.0003s0517 Capsella rubella HOM05D004470 ORTHO05D005079 1.0e-49 199.9 112 90.2
CARHR080260 Cardamine hirsuta HOM05D004470 ORTHO05D005079 3.9e-49 198.0 112 88.4
BcaB04g19711 Brassica carinata HOM05D004470 ORTHO05D005079 3.6e-42 174.9 112 78.6
Aa31LG5G16190 Aethionema arabicum HOM05D004470 ORTHO05D005079 4.6e-42 174.5 112 81.2
BcaC04g23637 Brassica carinata HOM05D004470 ORTHO05D005079 6.1e-42 174.1 112 78.6
BolC9t53546H Brassica oleracea HOM05D004470 ORTHO05D005079 6.1e-42 174.1 112 78.6
BraA09t36207Z Brassica rapa HOM05D004470 ORTHO05D005079 7.9e-42 173.7 112 78.6
Sp2g21200 Schrenkiella parvula HOM05D004470 ORTHO05D005079 7.9e-42 173.7 112 77.7
BcaNung03915 Brassica carinata HOM05D004470 ORTHO05D005079 2.3e-41 172.2 112 75.0
C09p06260 Brassica napus HOM05D004470 ORTHO05D005079 3.0e-41 171.8 112 77.7
BraA06t26628Z Brassica rapa HOM05D004470 ORTHO05D005079 3.0e-41 171.8 112 75.9
A06p37040 Brassica napus HOM05D004470 ORTHO05D005079 3.9e-41 171.4 112 75.9
A09p05650 Brassica napus HOM05D004470 ORTHO05D005079 5.1e-41 171.0 112 77.7
Thhalv10026672m.g Eutrema salsugineum HOM05D004470 ORTHO05D005079 2.5e-40 168.7 91 93.4
Carub.0006s2445 Capsella rubella HOM05D004470 ORTHO05D005079 4.3e-40 167.9 111 76.6
CARHR186760 Cardamine hirsuta HOM05D004470 ORTHO05D005079 7.4e-40 167.2 112 75.9
BcaNung03672 Brassica carinata HOM05D004470 ORTHO05D005079 1.1e-38 163.3 112 74.1
BolC7t44679H Brassica oleracea HOM05D004470 ORTHO05D005079 1.1e-38 163.3 112 72.3
AL6G38670 Arabidopsis lyrata HOM05D004470 ORTHO05D005079 1.8e-38 162.5 113 75.2
THA.LOC104802774 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 3.1e-38 161.8 113 74.3
THA.LOC104821881 Tarenaya hassleriana HOM05D004470 ORTHO05D005079 9.1e-38 160.2 99 80.8
Aqoxy2G02663 Aquilegia oxysepala HOM05D004470 ORTHO05D005079 3.6e-34 148.3 89 78.7
PGR031G2302 Punica granatum HOM05D004470 ORTHO05D005079 1.5e-32 142.9 118 61.0
Potri.013G007600 Populus trichocarpa HOM05D004470 ORTHO05D005079 5.7e-32 141.0 114 61.4
Sabra13G0006500 Salix brachista HOM05D004470 ORTHO05D005079 9.7e-32 140.2 114 61.4
TWI63G0379 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.3e-31 139.8 114 64.0
TWI36G1558 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 1.7e-31 139.4 114 64.9
TAR362G0763 Trochodendron aralioides HOM05D004470 ORTHO05D005079 1.7e-31 139.4 111 61.3
Sed0027904 Sechium edule HOM05D004470 ORTHO05D005079 2.2e-31 139.0 112 62.5
Sc16g0009110 Simmondsia chinensis HOM05D004470 ORTHO05D005079 2.2e-31 139.0 110 61.8
Thecc.05G324600 Theobroma cacao HOM05D004470 ORTHO05D005079 2.2e-31 139.0 112 61.6
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 2.8e-31 138.7 112 60.7
TWI34G1281 Tripterygium wilfordii HOM05D004470 ORTHO05D005079 2.8e-31 138.7 113 64.6
Duzib106G0025 Durio zibethinus HOM05D004470 ORTHO05D005079 3.7e-31 138.3 112 61.6
Duzib128G0232 Durio zibethinus HOM05D004470 ORTHO05D005079 3.7e-31 138.3 112 61.6
Sabra05G0020100 Salix brachista HOM05D004470 ORTHO05D005079 4.8e-31 137.9 114 60.5
MELO3C015252.2 Cucumis melo HOM05D004470 ORTHO05D005079 6.3e-31 137.5 112 61.6
Manes.08G110300 Manihot esculenta HOM05D004470 ORTHO05D005079 6.3e-31 137.5 111 62.2
PGSC0003DMG400002761 Solanum tuberosum HOM05D004470 ORTHO05D005079 6.3e-31 137.5 112 59.8
CsaV3_1G037920 Cucumis sativus L. HOM05D004470 ORTHO05D005079 8.2e-31 137.1 112 61.6
Dinv30905 Davidia involucrata HOM05D004470 ORTHO05D005079 8.2e-31 137.1 112 62.5
Atru.chr1.2932 Acer truncatum HOM05D004470 ORTHO05D005079 1.1e-30 136.7 114 62.3
COL.COLO4_05537 Corchorus olitorius HOM05D004470 ORTHO05D005079 1.1e-30 136.7 89 70.8
Prupe.2G047800 Prunus persica HOM05D004470 ORTHO05D005079 1.1e-30 136.7 112 61.6
Prupe.3G062500 Prunus persica HOM05D004470 ORTHO05D005079 1.1e-30 136.7 112 60.7
Sopen01g044200 Solanum pennellii HOM05D004470 ORTHO05D005079 1.4e-30 136.3 112 58.9
GSVIVG01031257001 Vitis vinifera HOM05D004470 ORTHO05D005079 1.4e-30 136.3 88 73.9
Gohir.A08G205100 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.4e-30 135.6 89 70.8
Gohir.D08G222200 Gossypium hirsutum HOM05D004470 ORTHO05D005079 2.4e-30 135.6 89 70.8
Gorai.004G236000 Gossypium raimondii HOM05D004470 ORTHO05D005079 2.4e-30 135.6 89 70.8
SGA_v2.0_scaffold37G14596 Striga asiatica HOM05D004470 ORTHO05D005079 3.1e-30 135.2 113 58.4
CANSAT56G4147 Cannabis sativa HOM05D004470 ORTHO05D005079 4.1e-30 134.8 110 60.9
CiPaw.08G154600 Carya illinoinensis HOM05D004470 ORTHO05D005079 4.1e-30 134.8 111 60.4
Eucgr.H03299 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.1e-30 134.8 110 63.6
Lalb_Chr02g0147721 Lupinus albus HOM05D004470 ORTHO05D005079 4.1e-30 134.8 112 59.8
Manes.09G177800 Manihot esculenta HOM05D004470 ORTHO05D005079 5.3e-30 134.4 111 61.3
Potri.005G011800 Populus trichocarpa HOM05D004470 ORTHO05D005079 5.3e-30 134.4 114 59.6
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla HOM05D004470 ORTHO05D005079 6.9e-30 134.0 112 58.0
Nitab4.5_0010074g0010 Nicotiana tabacum HOM05D004470 ORTHO05D005079 6.9e-30 134.0 113 60.2
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea HOM05D004470 ORTHO05D005079 9.1e-30 133.7 87 72.4
PSO339G4842 Papaver somniferum HOM05D004470 ORTHO05D005079 9.1e-30 133.7 109 64.2
CAN.G1076.31 Capsicum annuum HOM05D004470 ORTHO05D005079 1.2e-29 133.3 113 60.2
Nitab4.5_0001338g0040 Nicotiana tabacum HOM05D004470 ORTHO05D005079 1.2e-29 133.3 113 59.3
Phvul.007G202300 Phaseolus vulgaris HOM05D004470 ORTHO05D005079 1.2e-29 133.3 116 59.5
CANSAT54G2827 Cannabis sativa HOM05D004470 ORTHO05D005079 1.5e-29 132.9 112 60.7
QL03p015399 Quercus lobata HOM05D004470 ORTHO05D005079 1.5e-29 132.9 111 59.5
TPR.G34849 Trifolium pratense HOM05D004470 ORTHO05D005079 1.5e-29 132.9 98 67.3
Glyma.20G096000 Glycine max HOM05D004470 ORTHO05D005079 2.0e-29 132.5 113 61.9
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea HOM05D004470 ORTHO05D005079 2.6e-29 132.1 86 72.1
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea HOM05D004470 ORTHO05D005079 2.6e-29 132.1 86 72.1
Medtr2g023920 Medicago truncatula HOM05D004470 ORTHO05D005079 2.6e-29 132.1 99 67.7
CDE09G1304 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 3.4e-29 131.7 87 71.3
Peaxi162Scf00357g00829 Petunia axillaris HOM05D004470 ORTHO05D005079 3.4e-29 131.7 113 60.2
Psat1g179040 Pisum sativum HOM05D004470 ORTHO05D005079 3.4e-29 131.7 99 64.6
Haze_04037 Corylus avellana HOM05D004470 ORTHO05D005079 4.5e-29 131.3 112 58.0
Eucgr.A00650 Eucalyptus grandis HOM05D004470 ORTHO05D005079 4.5e-29 131.3 108 62.0
FAN05G2322 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.5e-29 131.3 112 61.6
CSS0034232 Camellia sinensis var. sinensis HOM05D004470 ORTHO05D005079 5.9e-29 131.0 112 58.9
Lj6g0017458 Lotus japonicus HOM05D004470 ORTHO05D005079 5.9e-29 131.0 114 61.4
PSO513G0108 Papaver somniferum HOM05D004470 ORTHO05D005079 5.9e-29 131.0 103 66.0
PSO675G4687 Papaver somniferum HOM05D004470 ORTHO05D005079 7.7e-29 130.6 88 73.9
TPR.G29395 Trifolium pratense HOM05D004470 ORTHO05D005079 7.7e-29 130.6 99 65.7
FAN02G2550 Fragaria x ananassa HOM05D004470 ORTHO05D005079 1.0e-28 130.2 112 60.7
CiPaw.07G030800 Carya illinoinensis HOM05D004470 ORTHO05D005079 1.3e-28 129.8 112 57.1
Ciclev10002908m.g Citrus clementina HOM05D004470 ORTHO05D005079 1.3e-28 129.8 114 59.6
MD10G1090000 Malus domestica HOM05D004470 ORTHO05D005079 1.3e-28 129.8 89 68.5
Nn3g21765 Nelumbo nucifera HOM05D004470 ORTHO05D005079 1.7e-28 129.4 88 68.2
PSO541G1615 Papaver somniferum HOM05D004470 ORTHO05D005079 1.7e-28 129.4 88 73.9
RcHm_v2.0_Chr2g0139741 Rosa chinensis HOM05D004470 ORTHO05D005079 1.7e-28 129.4 112 59.8
MSTRG.5145 Avicennia marina HOM05D004470 ORTHO05D005079 2.2e-28 129.0 110 55.5
FAN14G0179 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.2e-28 129.0 112 60.7
SalBow5G0245 Salvia bowleyana HOM05D004470 ORTHO05D005079 2.2e-28 129.0 111 56.8
FAN09G3660 Fragaria x ananassa HOM05D004470 ORTHO05D005079 2.9e-28 128.6 112 59.8
Glyma.10G146200 Glycine max HOM05D004470 ORTHO05D005079 3.8e-28 128.3 112 60.7
Actinidia35512 Actinidia chinensis HOM05D004470 ORTHO05D005079 8.5e-28 127.1 89 66.3
ATR0693G181 Amborella trichopoda HOM05D004470 ORTHO05D005079 2.5e-27 125.6 84 71.4
Migut.N00943 Erythranthe guttata HOM05D004470 ORTHO05D005079 2.5e-27 125.6 112 56.2
SGA_v2.0_scaffold5G02899 Striga asiatica HOM05D004470 ORTHO05D005079 3.2e-27 125.2 101 59.4
CDE02G2719 Ceratophyllum demersum HOM05D004470 ORTHO05D005079 5.5e-27 124.4 87 66.7
Ah.06g196140 Amaranthus hybridus HOM05D004470 ORTHO05D005079 7.2e-27 124.0 87 67.8
MD07G1055000 Malus domestica HOM05D004470 ORTHO05D005079 9.4e-27 123.6 90 66.7
Cfa006723 Carpinus fangiana HOM05D004470 ORTHO05D005079 1.2e-26 123.2 107 57.0
ClCG03G017770 Citrullus lanatus HOM05D004470 ORTHO05D005079 1.6e-26 122.9 76 75.0
Ah.16g100620 Amaranthus hybridus HOM05D004470 ORTHO05D005079 2.1e-26 122.5 109 58.7
AUR62006764 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.1e-26 122.5 86 66.3
EL10Ac4g09488 Beta vulgaris HOM05D004470 ORTHO05D005079 2.7e-26 122.1 87 66.7
Hund07308 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.7e-26 122.1 88 68.2
HPP92_002708 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.6e-26 121.7 91 64.8
Ca_10181_v3 Cicer arietinum L. HOM05D004470 ORTHO05D005079 4.7e-26 121.3 117 59.0
HPP92_027934 Vanilla planifolia HOM05D004470 ORTHO05D005079 4.7e-26 121.3 84 69.0
Nitab4.5_0001255g0050 Nicotiana tabacum HOM05D004470 ORTHO05D005079 2.3e-25 119.0 141 48.9
Sabra05G0008600 Salix brachista HOM05D004470 ORTHO05D005079 5.2e-25 117.9 155 44.5
Cc02_g35220 Coffea canephora HOM05D004470 ORTHO05D005079 8.8e-25 117.1 111 54.1
Hund21865 Selenicereus undatus HOM05D004470 ORTHO05D005079 2.0e-24 115.9 79 69.6
HPP92_002665 Vanilla planifolia HOM05D004470 ORTHO05D005079 3.3e-24 115.2 84 66.7
Oeu000058.1 Olea europaea HOM05D004470 ORTHO05D005079 7.4e-24 114.0 112 50.9
Nn4g25533 Nelumbo nucifera HOM05D004470 ORTHO05D005079 8.2e-23 110.5 134 45.5
Lsat_1_v5_gn_2_67201 Lactuca sativa HOM05D004470 ORTHO05D005079 1.1e-22 110.2 116 51.7
MBI18_g35544_MAGBIO Magnolia biondii HOM05D004470 ORTHO05D005079 2.4e-22 109.0 112 55.4
Os01g0299400 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 4.1e-22 108.2 85 64.7
DCAR_025290 Daucus carota HOM05D004470 ORTHO05D005079 7.0e-22 107.5 107 53.3
Rhsim11G0097400 Rhododendron simsii HOM05D004470 ORTHO05D005079 7.7e-21 104.0 111 52.3
ECA238G3981 Erigeron canadensis HOM05D004470 ORTHO05D005079 1.0e-20 103.6 91 59.3
MD15G1427600 Malus domestica HOM05D004470 ORTHO05D005079 3.8e-20 101.7 72 66.7
Aa31LG1G17020 Aethionema arabicum HOM05D004470 ORTHO05D005079 5.0e-20 101.3 80 67.5
Zm00001eb340410 Zea mays HOM05D004470 ORTHO05D005079 8.5e-20 100.5 86 59.3
HanXRQChr14g0445721 Helianthus annuus HOM05D004470 ORTHO05D005079 1.5e-19 99.8 115 50.4
Lju926A3T37 Lonicera japonica HOM05D004470 ORTHO05D005079 2.5e-19 99.0 86 58.1
Zm00001eb130040 Zea mays HOM05D004470 ORTHO05D005079 4.2e-19 98.2 84 58.3
Os10g0150200 Oryza sativa ssp. japonica HOM05D004470 ORTHO05D005079 9.4e-19 97.1 84 59.5
vmacro01577 Vaccinium macrocarpon HOM05D004470 ORTHO05D005079 9.4e-19 97.1 105 53.3
FAN26G0538 Fragaria x ananassa HOM05D004470 ORTHO05D005079 3.6e-18 95.1 114 52.6
FAN28G2801 Fragaria x ananassa HOM05D004470 ORTHO05D005079 4.7e-18 94.7 90 60.0
FvH4_6g32060 Fragaria vesca HOM05D004470 ORTHO05D005079 8.0e-18 94.0 85 58.8
C02p58610 Brassica napus HOM05D004470 ORTHO05D005079 4.0e-17 91.7 74 66.2
BcaC03g17832 Brassica carinata HOM05D004470 ORTHO05D005079 5.2e-17 91.3 72 66.7
BcaNung06220 Brassica carinata HOM05D004470 ORTHO05D005079 5.2e-17 91.3 72 66.7
Sc18g0006160 Simmondsia chinensis HOM05D004470 ORTHO05D005079 1.2e-16 90.1 66 65.2
VMungo0720G0966 Vigna mungo HOM05D004470 ORTHO05D005079 2.0e-16 89.4 65 66.2
unitig_37.g12917 Utricularia gibba HOM05D004470 ORTHO05D005079 5.7e-16 87.8 83 56.6
DCAR_002036 Daucus carota HOM05D004470 ORTHO05D005079 1.8e-14 82.8 88 53.4
AUR62000416 Chenopodium quinoa HOM05D004470 ORTHO05D005079 2.4e-14 82.4 60 65.0
Rhsim05G0127900 Rhododendron simsii HOM05D004470 ORTHO05D005079 1.2e-13 80.1 49 77.6
Cpa.g.sc48.175 Carica papaya HOM05D004470 ORTHO05D005079 1.7e-12 76.3 50 74.0
Mapoly0164s0021 Marchantia polymorpha HOM05D004470 ORTHO05D005079 5.0e-12 74.7 69 50.7
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis HOM05D004470 ORTHO05D005079 1.1e-11 73.6 68 48.5
Eucgr.H03248 Eucalyptus grandis HOM05D004470 ORTHO05D005079 3.2e-11 72.0 60 60.0
Pp3c6_8090 Physcomitrium patens HOM05D004470 ORTHO05D005079 2.1e-10 69.3 68 51.5
HanXRQChr15g0471581 Helianthus annuus HOM05D004470 ORTHO05D005079 2.7e-10 68.9 82 46.3
A02p39020 Brassica napus HOM05D004470 ORTHO05D005079 4.7e-10 68.2 62 59.7
BolC2t11922H Brassica oleracea HOM05D004470 ORTHO05D005079 1.4e-09 66.6 72 52.8
SHI42436 Sapria himalayana HOM05D004470 ORTHO05D005079 5.2e-09 64.7 54 59.3
SEGI_31285 Sequoiadendron giganteum HOM05D004470 ORTHO05D005079 6.8e-09 64.3 63 50.8
AUR62036369 Chenopodium quinoa HOM05D004470 ORTHO05D005079 1.5e-08 63.2 46 63.0
vmacro19787 Vaccinium macrocarpon HOM05D000003 ORTHO05D005079 4.4e-08 61.6 68 42.6
AUR62033672 Chenopodium quinoa HOM05D004470 ORTHO05D005079 4.1e-06 55.1 50 60.0
SMO116G0179 Selaginella moellendorffii HOM05D004470 ORTHO05D005079 7.0e-06 54.3 65 43.1
SMO195G0040 Selaginella moellendorffii HOM05D000001 ORTHO05D005079 7.0e-06 54.3 65 43.1


User provided reference genes

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