Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g04510 Schrenkiella parvula HOM05D006169 ORTHO05D007698 5.3e-150 534.3 258 100.0
AT3G05625 Arabidopsis thaliana HOM05D006169 ORTHO05D007698 4.2e-139 498.0 258 91.5
CARHR080070 Cardamine hirsuta HOM05D006169 ORTHO05D007698 2.7e-138 495.4 258 92.6
AL3G16270 Arabidopsis lyrata HOM05D006169 ORTHO05D007698 1.4e-137 493.0 258 91.9
Carub.0003s0495 Capsella rubella HOM05D006169 ORTHO05D007698 6.7e-137 490.7 259 92.3
BcaB04g19252 Brassica carinata HOM05D006169 ORTHO05D007698 8.8e-137 490.3 261 92.0
Thhalv10021364m.g Eutrema salsugineum HOM05D006169 ORTHO05D007698 3.3e-136 488.4 258 91.5
BcaB04g19251 Brassica carinata HOM05D006169 ORTHO05D007698 9.7e-136 486.9 260 91.5
A03p34240 Brassica napus HOM05D006169 ORTHO05D007698 9.7e-136 486.9 260 91.9
BraA03t12598Z Brassica rapa HOM05D006169 ORTHO05D007698 9.7e-136 486.9 260 91.9
BolC3t16445H Brassica oleracea HOM05D006169 ORTHO05D007698 1.7e-135 486.1 261 91.2
C03p41640 Brassica napus HOM05D006169 ORTHO05D007698 5.2e-129 464.5 248 92.7
BcaB04g19253 Brassica carinata HOM05D006169 ORTHO05D007698 5.7e-128 461.1 259 88.0
Aa31LG5G16050 Aethionema arabicum HOM05D006169 ORTHO05D007698 3.1e-126 455.3 265 82.6
THA.LOC104802790 Tarenaya hassleriana HOM05D006169 ORTHO05D007698 4.7e-122 441.4 255 83.5
Manes.08G114800 Manihot esculenta HOM05D006169 ORTHO05D007698 1.2e-98 363.6 250 71.6
QL03p019145 Quercus lobata HOM05D006169 ORTHO05D007698 2.3e-97 359.4 234 76.1
GSVIVG01031157001 Vitis vinifera HOM05D006169 ORTHO05D007698 4.0e-97 358.6 243 72.0
Eucgr.L02153 Eucalyptus grandis HOM05D006169 ORTHO05D007698 8.9e-97 357.5 253 70.4
arahy.Tifrunner.gnm1.ann1.NVQ69B Arachis hypogaea HOM05D006169 ORTHO05D007698 1.5e-96 356.7 247 71.3
CANSAT54G3053 Cannabis sativa HOM05D006169 ORTHO05D007698 1.5e-96 356.7 253 68.8
AUR62000726 Chenopodium quinoa HOM05D006169 ORTHO05D007698 1.5e-96 356.7 213 77.5
Lj5g0023338 Lotus japonicus HOM05D006169 ORTHO05D007698 2.0e-96 356.3 247 68.8
Potri.013G012400 Populus trichocarpa HOM05D006169 ORTHO05D007698 4.4e-96 355.1 219 76.3
Rhsim05G0136600 Rhododendron simsii HOM05D006169 ORTHO05D007698 4.4e-96 355.1 213 79.3
Eucgr.H03261 Eucalyptus grandis HOM05D006169 ORTHO05D007698 1.3e-95 353.6 219 77.2
Medtr1g083600 Medicago truncatula HOM05D006169 ORTHO05D007698 1.3e-95 353.6 223 75.8
Glyma.10G150300 Glycine max HOM05D006169 ORTHO05D007698 2.2e-95 352.8 247 68.4
Thecc.05G316900 Theobroma cacao HOM05D006169 ORTHO05D007698 2.2e-95 352.8 267 68.2
MELO3C004212.2 Cucumis melo HOM05D006169 ORTHO05D007698 2.9e-95 352.4 216 78.7
CsaV3_2G006780 Cucumis sativus L. HOM05D006169 ORTHO05D007698 3.7e-95 352.1 216 78.2
MD04G1197600 Malus domestica HOM05D006169 ORTHO05D007698 3.7e-95 352.1 212 77.8
Ciclev10001820m.g Citrus clementina HOM05D006169 ORTHO05D007698 4.9e-95 351.7 267 67.4
Ca_10150_v3 Cicer arietinum L. HOM05D006169 ORTHO05D007698 8.3e-95 350.9 211 77.7
FvH4_6g06920 Fragaria vesca HOM05D006169 ORTHO05D007698 8.3e-95 350.9 212 78.8
Nitab4.5_0001266g0050 Nicotiana tabacum HOM05D006169 ORTHO05D007698 1.1e-94 350.5 221 74.7
Sed0028110 Sechium edule HOM05D006169 ORTHO05D007698 1.1e-94 350.5 235 72.8
Atru.chr5.1841 Acer truncatum HOM05D006169 ORTHO05D007698 1.9e-94 349.7 219 76.3
Duzib177G0247 Durio zibethinus HOM05D006169 ORTHO05D007698 1.9e-94 349.7 264 67.8
Aqoxy5G00801 Aquilegia oxysepala HOM05D006169 ORTHO05D007698 2.4e-94 349.4 226 74.3
RcHm_v2.0_Chr3g0456451 Rosa chinensis HOM05D006169 ORTHO05D007698 2.4e-94 349.4 230 74.8
TWI56G0200 Tripterygium wilfordii HOM05D006169 ORTHO05D007698 3.2e-94 349.0 234 72.2
Peaxi162Scf00484g00066 Petunia axillaris HOM05D006169 ORTHO05D007698 5.4e-94 348.2 213 76.1
Gohir.A11G270300 Gossypium hirsutum HOM05D006169 ORTHO05D007698 9.2e-94 347.4 269 66.5
SalBow3G0569 Salvia bowleyana HOM05D006169 ORTHO05D007698 4.6e-93 345.1 217 75.6
Eucgr.H04522 Eucalyptus grandis HOM05D006169 ORTHO05D007698 6.0e-93 344.7 239 71.5
Gorai.007G302700 Gossypium raimondii HOM05D006169 ORTHO05D007698 6.0e-93 344.7 269 66.2
Phvul.007G198500 Phaseolus vulgaris HOM05D006169 ORTHO05D007698 6.0e-93 344.7 247 68.0
Gohir.D11G280500 Gossypium hirsutum HOM05D006169 ORTHO05D007698 1.3e-92 343.6 269 65.4
PGR031G2380 Punica granatum HOM05D006169 ORTHO05D007698 1.3e-92 343.6 216 75.9
DCAR_029375 Daucus carota HOM05D006169 ORTHO05D007698 1.7e-92 343.2 222 73.0
Hma1.2p1_1441F.1_g283670 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 3.0e-92 342.4 269 65.4
Actinidia02688 Actinidia chinensis HOM05D006169 ORTHO05D007698 5.1e-92 341.7 217 77.4
HanXRQChr06g0182151 Helianthus annuus HOM05D006169 ORTHO05D007698 5.1e-92 341.7 263 65.4
CAN.G813.8 Capsicum annuum HOM05D006169 ORTHO05D007698 1.1e-91 340.5 221 71.5
Cc02_g34500 Coffea canephora HOM05D006169 ORTHO05D007698 5.6e-91 338.2 211 76.3
COL.COLO4_10563 Corchorus olitorius HOM05D006169 ORTHO05D007698 5.6e-91 338.2 268 66.0
Lalb_Chr06g0167751 Lupinus albus HOM05D006169 ORTHO05D007698 9.5e-91 337.4 255 65.1
ECA236G4200 Erigeron canadensis HOM05D006169 ORTHO05D007698 1.2e-90 337.0 256 65.6
Ah.04g161300 Amaranthus hybridus HOM05D006169 ORTHO05D007698 2.1e-90 336.3 248 66.9
Migut.N02103 Erythranthe guttata HOM05D006169 ORTHO05D007698 3.6e-90 335.5 247 66.8
Lsat_1_v5_gn_7_73300 Lactuca sativa HOM05D006169 ORTHO05D007698 3.6e-90 335.5 203 77.8
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 1.4e-89 333.6 252 65.9
Sc14g0006600 Simmondsia chinensis HOM05D006169 ORTHO05D007698 1.8e-89 333.2 213 73.2
SGA_v2.0_scaffold81G26108 Striga asiatica HOM05D006169 ORTHO05D007698 7.6e-88 327.8 225 71.1
Sopen10g013390 Solanum pennellii HOM05D006169 ORTHO05D007698 3.7e-87 325.5 255 62.7
PSO210G0761 Papaver somniferum HOM05D006169 ORTHO05D007698 4.9e-87 325.1 215 72.6
Haze_04109 Corylus avellana HOM05D006169 ORTHO05D007698 1.1e-86 323.9 282 61.7
Solyc10g044710.2 Solanum lycopersicum HOM05D006169 ORTHO05D007698 1.4e-86 323.6 255 62.0
Lj9C200T3 Lonicera japonica HOM05D006169 ORTHO05D007698 2.4e-86 322.8 275 61.1
HPP92_016954 Vanilla planifolia HOM05D006169 ORTHO05D007698 5.4e-86 321.6 236 66.5
CDE05G1145 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 1.3e-84 317.0 215 69.3
HPP92_016950 Vanilla planifolia HOM05D006169 ORTHO05D007698 1.7e-84 316.6 217 70.0
PSO832G1922 Papaver somniferum HOM05D006169 ORTHO05D007698 2.3e-84 316.2 224 69.2
TPR.G17714 Trifolium pratense HOM05D006169 ORTHO05D007698 6.8e-81 304.7 177 79.1
ATR0693G261 Amborella trichopoda HOM05D006169 ORTHO05D007698 1.2e-80 303.9 212 69.8
ClCG02G015230 Citrullus lanatus HOM05D006169 ORTHO05D007698 4.4e-80 302.0 216 69.4
EL10Ac4g09881 Beta vulgaris HOM05D006169 ORTHO05D007698 7.6e-80 301.2 204 72.1
Cfa006660 Carpinus fangiana HOM05D006169 ORTHO05D007698 1.7e-79 300.1 249 64.7
CiPaw.08G158800 Carya illinoinensis HOM05D006169 ORTHO05D007698 2.2e-79 299.7 267 60.3
unitig_0.g2320 Utricularia gibba HOM05D006169 ORTHO05D007698 1.9e-78 296.6 217 67.3
FAN14G4015 Fragaria x ananassa HOM05D006169 ORTHO05D007698 4.2e-78 295.4 173 78.6
Prupe.6G318000 Prunus persica HOM05D006169 ORTHO05D007698 9.3e-78 294.3 211 69.2
Hund07115 Selenicereus undatus HOM05D006169 ORTHO05D007698 6.0e-77 291.6 233 64.4
SEGI_23594 Sequoiadendron giganteum HOM05D006169 ORTHO05D007698 1.3e-76 290.4 213 65.3
Nn3g21567 Nelumbo nucifera HOM05D006169 ORTHO05D007698 3.9e-76 288.9 222 65.3
FAN09G1827 Fragaria x ananassa HOM05D006169 ORTHO05D007698 3.3e-75 285.8 212 68.4
MBI18_g25080_MAGBIO Magnolia biondii HOM05D006169 ORTHO05D007698 4.3e-75 285.4 189 73.5
AUR62005238 Chenopodium quinoa HOM05D006169 ORTHO05D007698 1.3e-74 283.9 167 77.2
Cpa.g.sc48.120 Carica papaya HOM05D006169 ORTHO05D007698 1.6e-74 283.5 316 51.9
Hma1.2p1_1441F.1_g283680 Hydrangea macrophylla HOM05D006169 ORTHO05D007698 2.6e-72 276.2 228 63.6
ClCG00G004550 Citrullus lanatus HOM05D006169 ORTHO05D007698 2.1e-69 266.5 297 50.5
Pp3c1_33190 Physcomitrium patens HOM05D006169 ORTHO05D007698 2.7e-69 266.2 197 66.5
CDE11G0042 Ceratophyllum demersum HOM05D006169 ORTHO05D007698 7.9e-69 264.6 225 58.2
Zm00001eb340780 Zea mays HOM05D006169 ORTHO05D007698 8.7e-68 261.2 190 66.8
arahy.Tifrunner.gnm1.ann1.X8FEVW Arachis hypogaea HOM05D006169 ORTHO05D007698 3.3e-67 259.2 173 73.4
Dinv24403 Davidia involucrata HOM05D006169 ORTHO05D007698 3.1e-65 252.7 203 67.0
Oeu048884.1 Olea europaea HOM05D006169 ORTHO05D007698 6.9e-65 251.5 150 79.3
Psat6g151520 Pisum sativum HOM05D006169 ORTHO05D007698 6.9e-65 251.5 178 68.5
Mapoly0065s0090 Marchantia polymorpha HOM05D006169 ORTHO05D007698 1.3e-63 247.3 196 59.7
Cre12.g508350 Chlamydomonas reinhardtii HOM05D006169 ORTHO05D007698 4.3e-59 232.3 188 60.1
Actinidia19770 Actinidia chinensis HOM05D006169 ORTHO05D007698 3.1e-57 226.1 169 67.5
CBR_g8203 Chara braunii HOM05D006169 ORTHO05D007698 1.2e-56 224.2 202 55.0
AagrBONN_evm.TU.Sc2ySwM_344.2014 Anthoceros agrestis HOM05D006169 ORTHO05D007698 4.2e-54 215.7 163 63.2
SMO358G0244 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 1.2e-53 214.2 181 56.9
VMungo0720G2022 Vigna mungo HOM05D006169 ORTHO05D007698 1.8e-52 210.3 254 49.6
FAN05G4461 Fragaria x ananassa HOM05D006169 ORTHO05D007698 1.9e-51 206.8 120 82.5
Nitab4.5_0000005g0540 Nicotiana tabacum HOM05D006169 ORTHO05D007698 3.3e-51 206.1 141 70.2
Glyma.20G237950 Glycine max HOM05D006169 ORTHO05D007698 4.6e-45 185.7 117 74.4
MCO01G635 Micromonas commoda HOM05D006169 ORTHO05D007698 3.1e-41 172.9 200 47.0
TAR365G0132 Trochodendron aralioides HOM05D002548 ORTHO05D003031 3.8e-39 166.0 224 43.3
arahy.Tifrunner.gnm1.ann1.91HID7 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.5e-35 154.1 130 60.8
arahy.Tifrunner.gnm1.ann1.Z5NCG3 Arachis hypogaea HOM05D006169 ORTHO05D007698 6.3e-34 148.7 81 85.2
arahy.Tifrunner.gnm1.ann1.W0CMT4 Arachis hypogaea HOM05D006169 ORTHO05D007698 1.7e-31 140.6 76 85.5
PRCOL_00000586 Prasinoderma coloniale HOM05D006169 ORTHO05D007698 2.7e-29 133.3 184 39.1
PGSC0003DMG400043741 Solanum tuberosum HOM05D006169 ORTHO05D007698 6.7e-28 128.6 117 54.7
SMO117G0309 Selaginella moellendorffii HOM05D006169 ORTHO05D007698 5.7e-27 125.6 116 44.0
RcHm_v2.0_Chr1g0332671 Rosa chinensis HOM05D006169 ORTHO05D007698 2.4e-25 120.2 69 78.3
arahy.Tifrunner.gnm1.ann1.CWA5R2 Arachis hypogaea HOM05D006169 ORTHO05D007698 7.2e-22 108.6 58 84.5
Sabra13G0011100 Salix brachista HOM05D006169 ORTHO05D007698 1.0e-20 104.8 167 44.3
CSS0014495 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 2.4e-17 93.6 79 62.0
MSTRG.5122 Avicennia marina HOM05D006169 ORTHO05D007698 4.1e-17 92.8 65 67.7
CSS0040457 Camellia sinensis var. sinensis HOM05D006169 ORTHO05D007698 5.0e-15 85.9 51 74.5
arahy.Tifrunner.gnm1.ann1.C5NY6B Arachis hypogaea HOM05D006169 ORTHO05D007698 9.4e-14 81.6 64 60.9
arahy.Tifrunner.gnm1.ann1.4I5A07 Arachis hypogaea HOM05D000158 ORTHO05D003614 1.6e-13 80.9 45 77.8
Os01g0343500 Oryza sativa ssp. japonica HOM05D006169 ORTHO05D007698 1.6e-13 80.9 105 41.0
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 4.7e-13 79.3 59 74.6
arahy.Tifrunner.gnm1.ann1.GNZ56J Arachis hypogaea HOM05D006169 ORTHO05D007698 2.0e-11 73.9 44 72.7


User provided reference genes

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