Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 2.6e-275 951.8 634 100.0
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 9.9e-174 614.4 636 68.1
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 3.8e-149 532.7 635 62.2
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 2.4e-143 513.5 635 60.3
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 6.3e-128 462.2 634 52.1
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 6.3e-128 462.2 634 52.1
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 2.5e-116 423.7 635 58.1
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 2.0e-105 387.5 635 49.4
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 2.1e-99 367.5 634 41.6
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 1.0e-98 365.2 634 47.5
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 9.8e-97 358.6 635 51.2
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 3.2e-95 353.6 634 42.9
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 1.5e-89 334.7 636 42.6
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.9e-87 327.8 634 40.4
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 1.5e-84 318.2 634 46.2
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 5.6e-84 316.2 620 47.3
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 2.6e-81 307.4 634 43.2
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.4e-79 301.6 633 47.6
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 3.9e-77 293.5 631 42.6
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 4.7e-75 286.6 635 38.6
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 2.9e-72 277.3 635 39.2
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 1.5e-68 265.0 601 36.9
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 2.1e-67 261.2 634 43.8
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 6.4e-64 249.6 645 33.8
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 6.2e-59 233.0 645 35.8
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.5e-54 217.2 655 34.7
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.3e-53 214.5 447 41.2
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 4.3e-52 210.3 636 32.9
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 4.8e-51 206.8 669 35.6
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 1.1e-50 205.7 637 30.3
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 1.8e-50 204.9 635 37.8
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.8e-50 204.9 669 35.4
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 3.8e-48 197.2 591 31.1
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 3.2e-47 194.1 623 28.1
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 2.7e-46 191.0 671 34.1
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 1.0e-45 189.1 645 32.7
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 1.0e-45 189.1 618 29.1
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 5.1e-45 186.8 648 28.7
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 6.7e-45 186.4 636 35.4
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 1.1e-44 185.7 635 32.1
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 4.3e-44 183.7 671 34.3
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 5.7e-44 183.3 621 29.0
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 2.8e-43 181.0 645 31.9
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 8.2e-43 179.5 644 33.2
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 1.4e-42 178.7 620 28.4
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 1.8e-42 178.3 627 28.2
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 5.3e-42 176.8 654 30.9
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 7.6e-41 172.9 667 26.8
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 2.5e-39 167.9 636 34.7
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 9.3e-39 166.0 635 32.6
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 1.2e-38 165.6 635 28.8
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 2.1e-38 164.9 634 27.1
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 1.5e-36 158.7 637 26.5
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 1.9e-36 158.3 593 32.5
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 2.5e-36 157.9 648 32.3
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 3.7e-35 154.1 636 32.5
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 4.5e-33 147.1 635 31.5
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 1.0e-32 146.0 630 34.9
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 1.0e-32 146.0 596 25.0
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 1.7e-32 145.2 764 24.7
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 2.9e-32 144.4 285 43.2
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 2.9e-32 144.4 285 43.2
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 6.5e-32 143.3 638 31.5
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 1.4e-31 142.1 616 25.6
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 2.5e-31 141.4 664 30.6
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.2e-31 141.0 639 29.0
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 5.5e-31 140.2 599 25.4
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 4.6e-30 137.1 298 35.9
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 6.1e-30 136.7 666 26.4
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.4e-29 135.6 668 31.6
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 3.9e-29 134.0 483 29.0
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 3.9e-29 134.0 643 28.5
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 9.7e-28 129.4 598 22.9
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 1.3e-27 129.0 637 32.3
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 6.3e-27 126.7 645 31.0
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 1.2e-25 122.5 668 31.0
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.4e-23 115.5 241 34.0
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 2.5e-23 114.8 758 27.2
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 2.1e-22 111.7 663 24.1
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 3.0e-21 107.8 635 26.5
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 3.9e-21 107.5 205 36.1
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 3.9e-21 107.5 647 31.5
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 2.0e-20 105.1 636 24.8
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 3.3e-20 104.4 630 34.4
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 3.3e-20 104.4 658 27.4
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 3.3e-20 104.4 663 28.2
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 7.4e-20 103.2 663 27.8
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 1.7e-19 102.1 637 25.7
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 1.7e-19 102.1 323 29.7
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.7e-19 102.1 766 22.2
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.2e-19 101.7 612 27.8
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 1.1e-18 99.4 872 24.3
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 1.8e-18 98.6 609 28.9
Nn4g26098 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.8e-18 98.6 713 27.1
CAN.G1329.24 Capsicum annuum HOM05D004923 ORTHO05D005940 9.1e-18 96.3 385 27.8
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 9.1e-18 96.3 664 27.3
Aqoxy2G03170 Aquilegia oxysepala HOM05D004923 ORTHO05D005940 2.0e-17 95.1 677 26.9
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.0e-17 95.1 635 28.3
Lj8C55T15 Lonicera japonica HOM05D004923 ORTHO05D005940 1.7e-16 92.0 291 31.6
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.2e-16 91.7 663 27.1
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.9e-16 91.3 663 27.1
Peaxi162Scf00016g10236 Petunia axillaris HOM05D004923 ORTHO05D005940 5.0e-16 90.5 266 31.6
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 8.5e-16 89.7 239 30.1
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 2.5e-15 88.2 663 26.7
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 2.5e-15 88.2 680 26.2
CARHR162300 Cardamine hirsuta HOM05D004923 ORTHO05D005940 2.7e-14 84.7 99 55.6
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 6.7e-13 80.1 480 32.5
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 5.7e-12 77.0 590 24.7
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 2.2e-11 75.1 643 30.2
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 2.2e-11 75.1 384 25.0
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 1.1e-10 72.8 119 42.0
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 1.4e-10 72.4 193 33.2
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 2.4e-10 71.6 313 36.1
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 5.3e-10 70.5 326 26.7
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 7.0e-10 70.1 673 24.8
ECA246G1289 Erigeron canadensis HOM05D004923 ORTHO05D005940 9.1e-10 69.7 198 30.8
Medtr1g082215 Medicago truncatula HOM05D004923 ORTHO05D005940 1.2e-09 69.3 711 24.6
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 1.6e-09 68.9 119 39.5
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 2.7e-09 68.2 117 35.9
unitig_8.g3020 Utricularia gibba HOM05D004923 ORTHO05D005940 5.9e-09 67.0 602 20.9
Lalb_Chr18g0045421 Lupinus albus HOM05D004923 ORTHO05D005940 7.7e-09 66.6 243 24.7
Ah.04g159880 Amaranthus hybridus HOM05D004923 ORTHO05D005940 1.3e-08 65.9 631 22.5
HanXRQChr15g0493471 Helianthus annuus HOM05D004923 ORTHO05D005940 1.7e-08 65.5 619 21.2
SHI18226 Sapria himalayana HOM05D004923 ORTHO05D005940 6.5e-08 63.5 180 30.6
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 1.1e-07 62.8 226 26.5
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 1.1e-07 62.8 226 26.5
COL.COLO4_23513 Corchorus olitorius HOM05D004923 ORTHO05D005940 1.9e-07 62.0 136 40.4
Ah.04g159900 Amaranthus hybridus HOM05D004923 ORTHO05D005940 3.2e-07 61.2 182 31.9
Ah.04g159890 Amaranthus hybridus HOM05D004923 ORTHO05D005940 4.2e-07 60.8 87 43.7
ECA233G0604 Erigeron canadensis HOM05D004923 ORTHO05D005940 4.2e-07 60.8 118 43.2
BcaNung04360 Brassica carinata HOM05D004923 ORTHO05D005940 8.0e-06 56.6 77 57.1


User provided reference genes

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