Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03900 Schrenkiella parvula HOM05D006168 ORTHO05D007602 1.1e-70 270.0 145 100.0
CARHR079400 Cardamine hirsuta HOM05D006168 ORTHO05D007602 6.4e-60 234.2 146 86.3
Thhalv10021722m.g Eutrema salsugineum HOM05D006168 ORTHO05D007602 3.0e-57 225.3 145 83.4
BolC3t16418H Brassica oleracea HOM05D006168 ORTHO05D007602 1.2e-55 219.9 146 82.2
BraA03t12572Z Brassica rapa HOM05D006168 ORTHO05D007602 6.2e-55 217.6 148 79.7
Aa31LG5G15370 Aethionema arabicum HOM05D006168 ORTHO05D007602 2.0e-53 212.6 145 79.3
AT3G05070 Arabidopsis thaliana HOM05D006168 ORTHO05D007602 2.0e-53 212.6 145 79.3
AL3G15460 Arabidopsis lyrata HOM05D006168 ORTHO05D007602 4.4e-53 211.5 145 79.3
A05p42500 Brassica napus HOM05D006168 ORTHO05D007602 5.4e-51 204.5 148 77.7
BraA05t23002Z Brassica rapa HOM05D006168 ORTHO05D007602 5.4e-51 204.5 148 77.7
Carub.0003s0432 Capsella rubella HOM05D006168 ORTHO05D007602 1.2e-50 203.4 146 76.7
C05p62160 Brassica napus HOM05D006168 ORTHO05D007602 2.7e-50 202.2 148 77.0
BolC5t34874H Brassica oleracea HOM05D006168 ORTHO05D007602 2.7e-50 202.2 148 77.0
BcaC05g29992 Brassica carinata HOM05D006168 ORTHO05D007602 1.3e-44 183.3 147 72.1
GSVIVG01024249001 Vitis vinifera HOM05D006168 ORTHO05D007602 2.7e-42 175.6 150 64.7
THA.LOC104818656 Tarenaya hassleriana HOM05D006168 ORTHO05D007602 3.5e-42 175.3 145 66.2
Manes.02G226600 Manihot esculenta HOM05D006168 ORTHO05D007602 4.6e-42 174.9 145 64.8
Gohir.A05G294800 Gossypium hirsutum HOM05D006168 ORTHO05D007602 5.1e-41 171.4 153 62.1
Gohir.D05G295400 Gossypium hirsutum HOM05D006168 ORTHO05D007602 5.1e-41 171.4 153 62.1
Sabra04G0045100 Salix brachista HOM05D006168 ORTHO05D007602 1.9e-40 169.5 150 62.0
Potri.004G067300 Populus trichocarpa HOM05D006168 ORTHO05D007602 3.6e-39 165.2 147 60.5
TWI81G0790 Tripterygium wilfordii HOM05D006168 ORTHO05D007602 6.2e-39 164.5 154 61.7
Duzib128G1786 Durio zibethinus HOM05D006168 ORTHO05D007602 1.4e-38 163.3 153 58.2
ClCG01G014720 Citrullus lanatus HOM05D006168 ORTHO05D007602 4.0e-38 161.8 148 64.9
Peaxi162Scf00643g00537 Petunia axillaris HOM05D006168 ORTHO05D007602 4.0e-38 161.8 136 65.4
CiPaw.16G075600 Carya illinoinensis HOM05D006168 ORTHO05D007602 6.9e-38 161.0 145 62.1
Duzib114G0883 Durio zibethinus HOM05D006168 ORTHO05D007602 6.9e-38 161.0 153 58.8
Gorai.009G312100 Gossypium raimondii HOM05D006168 ORTHO05D007602 9.0e-38 160.6 138 63.0
CsaV3_1G007610 Cucumis sativus L. HOM05D006168 ORTHO05D007602 1.2e-37 160.2 150 61.3
MELO3C002180.2 Cucumis melo HOM05D006168 ORTHO05D007602 2.6e-37 159.1 148 63.5
Prupe.5G244900 Prunus persica HOM05D006168 ORTHO05D007602 2.6e-37 159.1 152 60.5
COL.COLO4_12167 Corchorus olitorius HOM05D006168 ORTHO05D007602 4.5e-37 158.3 153 59.5
HanXRQChr14g0428251 Helianthus annuus HOM05D006168 ORTHO05D007602 9.9e-37 157.1 136 61.8
Lj5g0014337 Lotus japonicus HOM05D006168 ORTHO05D007602 9.9e-37 157.1 153 58.2
AUR62028326 Chenopodium quinoa HOM05D006168 ORTHO05D007602 2.2e-36 156.0 156 57.7
Dinv03501 Davidia involucrata HOM05D006168 ORTHO05D007602 3.8e-36 155.2 150 59.3
Dinv03506 Davidia involucrata HOM05D006168 ORTHO05D007602 3.8e-36 155.2 150 59.3
Sed0019180 Sechium edule HOM05D006168 ORTHO05D007602 3.8e-36 155.2 148 62.8
Hund08905 Selenicereus undatus HOM05D006168 ORTHO05D007602 3.8e-36 155.2 157 58.6
CANSAT35G1332 Cannabis sativa HOM05D006168 ORTHO05D007602 4.9e-36 154.8 143 60.1
Ah.14g084700 Amaranthus hybridus HOM05D006168 ORTHO05D007602 8.4e-36 154.1 157 59.9
Thecc.10G078900 Theobroma cacao HOM05D006168 ORTHO05D007602 1.4e-35 153.3 153 57.5
PGR083G1429 Punica granatum HOM05D006168 ORTHO05D007602 1.9e-35 152.9 152 58.6
AUR62025335 Chenopodium quinoa HOM05D006168 ORTHO05D007602 3.2e-35 152.1 136 63.2
Lsat_1_v5_gn_2_6441 Lactuca sativa HOM05D006168 ORTHO05D007602 3.2e-35 152.1 150 55.3
Cfa017805 Carpinus fangiana HOM05D006168 ORTHO05D007602 4.2e-35 151.8 153 57.5
Eucgr.H00657 Eucalyptus grandis HOM05D006168 ORTHO05D007602 7.1e-35 151.0 152 56.6
ECA238G2000 Erigeron canadensis HOM05D006168 ORTHO05D007602 9.3e-35 150.6 152 55.9
ATR0124G011 Amborella trichopoda HOM05D006168 ORTHO05D007602 1.2e-34 150.2 154 55.2
CDE04G1298 Ceratophyllum demersum HOM05D006168 ORTHO05D007602 1.2e-34 150.2 153 56.9
Nn3g18550 Nelumbo nucifera HOM05D006168 ORTHO05D007602 1.2e-34 150.2 159 56.6
FAN18G0639 Fragaria x ananassa HOM05D006168 ORTHO05D007602 2.7e-34 149.1 155 56.1
VMungo0720G1915 Vigna mungo HOM05D006168 ORTHO05D007602 7.9e-34 147.5 141 59.6
FvH4_5g18550 Fragaria vesca HOM05D006168 ORTHO05D007602 1.0e-33 147.1 155 55.5
PSO063G5228 Papaver somniferum HOM05D006168 ORTHO05D007602 1.0e-33 147.1 140 59.3
FAN04G0186 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.8e-33 146.4 155 56.8
DCAR_011406 Daucus carota HOM05D006168 ORTHO05D007602 2.3e-33 146.0 141 61.0
Aqoxy2G03978 Aquilegia oxysepala HOM05D006168 ORTHO05D007602 3.0e-33 145.6 146 56.8
Glyma.20G216400 Glycine max HOM05D006168 ORTHO05D007602 3.0e-33 145.6 145 57.9
Medtr1g077570 Medicago truncatula HOM05D006168 ORTHO05D007602 3.0e-33 145.6 162 53.7
RcHm_v2.0_Chr7g0176961 Rosa chinensis HOM05D006168 ORTHO05D007602 3.0e-33 145.6 151 57.6
Solyc06g072170.2 Solanum lycopersicum HOM05D006168 ORTHO05D007602 6.7e-33 144.4 138 58.7
Sopen06g028470 Solanum pennellii HOM05D006168 ORTHO05D007602 6.7e-33 144.4 138 58.7
PGSC0003DMG400027059 Solanum tuberosum HOM05D006168 ORTHO05D007602 6.7e-33 144.4 138 58.7
Atru.chr9.17 Acer truncatum HOM05D006168 ORTHO05D007602 8.7e-33 144.1 137 60.6
EL10Ac8g18962 Beta vulgaris HOM05D006168 ORTHO05D007602 1.1e-32 143.7 156 55.8
ECA238G2968 Erigeron canadensis HOM05D000092 ORTHO05D000042 1.1e-32 143.7 133 58.6
Phvul.L006301 Phaseolus vulgaris HOM05D006168 ORTHO05D007602 1.5e-32 143.3 140 57.9
ECA238G0114 Erigeron canadensis HOM05D006168 ORTHO05D007602 1.9e-32 142.9 152 52.6
ECA238G1897 Erigeron canadensis HOM05D006168 ORTHO05D007602 1.9e-32 142.9 152 52.6
Glyma.10G174000 Glycine max HOM05D006168 ORTHO05D007602 3.3e-32 142.1 145 57.2
MD14G1246600 Malus domestica HOM05D006168 ORTHO05D007602 3.3e-32 142.1 155 55.5
QL10p033704 Quercus lobata HOM05D006168 ORTHO05D007602 3.3e-32 142.1 141 58.9
Rhsim12G0137000 Rhododendron simsii HOM05D006168 ORTHO05D007602 3.3e-32 142.1 133 62.4
Ca_09928_v3 Cicer arietinum L. HOM05D006168 ORTHO05D007602 1.3e-31 140.2 161 52.2
Cc02_g29290 Coffea canephora HOM05D006168 ORTHO05D007602 2.8e-31 139.0 168 50.0
MBI06_g12548_MAGBIO Magnolia biondii HOM05D006168 ORTHO05D007602 4.8e-31 138.3 154 53.2
TAR629G1867 Trochodendron aralioides HOM05D006168 ORTHO05D007602 4.8e-31 138.3 143 57.3
CDE08G0644 Ceratophyllum demersum HOM05D006168 ORTHO05D007602 6.2e-31 137.9 158 53.2
FAN08G3581 Fragaria x ananassa HOM05D006168 ORTHO05D007602 8.1e-31 137.5 154 53.9
HPP92_020852 Vanilla planifolia HOM05D006168 ORTHO05D007602 1.8e-30 136.3 142 57.7
CSS0046866 Camellia sinensis var. sinensis HOM05D006168 ORTHO05D007602 2.4e-30 136.0 96 70.8
CAN.G65.65 Capsicum annuum HOM05D006168 ORTHO05D007602 2.4e-30 136.0 92 71.7
MD06G1240400 Malus domestica HOM05D006168 ORTHO05D007602 4.0e-30 135.2 149 55.0
Migut.D02066 Erythranthe guttata HOM05D006168 ORTHO05D007602 6.9e-30 134.4 158 51.9
Ciclev10022597m.g Citrus clementina HOM05D006168 ORTHO05D007602 1.5e-29 133.3 165 50.9
Lalb_Chr21g0311691 Lupinus albus HOM05D006168 ORTHO05D007602 4.5e-29 131.7 144 54.2
Psat6g054520 Pisum sativum HOM05D006168 ORTHO05D007602 5.8e-29 131.3 159 50.3
BcaC01g04336 Brassica carinata HOM05D006168 ORTHO05D007602 1.7e-28 129.8 103 71.8
SGA_v2.0_scaffold387G50509 Striga asiatica HOM05D006168 ORTHO05D007602 3.8e-28 128.6 164 50.6
BcaB04g19282 Brassica carinata HOM05D006168 ORTHO05D007602 1.1e-27 127.1 90 80.0
vmacro16399 Vaccinium macrocarpon HOM05D006168 ORTHO05D007602 1.9e-27 126.3 167 47.9
MSTRG.4316 Avicennia marina HOM05D006168 ORTHO05D007602 3.2e-27 125.6 161 50.3
SEGI_05677 Sequoiadendron giganteum HOM05D006168 ORTHO05D007602 7.1e-27 124.4 157 49.7
Haze_18408 Corylus avellana HOM05D006168 ORTHO05D007602 2.1e-26 122.9 93 67.7
unitig_21.g20432 Utricularia gibba HOM05D006168 ORTHO05D007602 1.9e-24 116.3 147 50.3
Os06g0730800 Oryza sativa ssp. japonica HOM05D006168 ORTHO05D007602 7.4e-24 114.4 113 53.1
RcHm_v2.0_Chr5g0006211 Rosa chinensis HOM05D006168 ORTHO05D007602 1.6e-23 113.2 153 46.4
Sed0015845 Sechium edule HOM05D006168 ORTHO05D007602 6.2e-23 111.3 137 52.6
Zm00001eb228960 Zea mays HOM05D006168 ORTHO05D007602 8.2e-23 110.9 179 41.9
AagrBONN_evm.TU.Sc2ySwM_368.389 Anthoceros agrestis HOM05D006168 ORTHO05D007602 1.8e-22 109.8 133 52.6
Nitab4.5_0000477g0160 Nicotiana tabacum HOM05D006168 ORTHO05D007602 1.8e-22 109.8 86 66.3
Nitab4.5_0002771g0020 Nicotiana tabacum HOM05D006168 ORTHO05D007602 4.0e-22 108.6 84 66.7
Oeu034422.1 Olea europaea HOM05D006168 ORTHO05D007602 1.5e-21 106.7 139 49.6
Potri.017G154100 Populus trichocarpa HOM05D006168 ORTHO05D007602 7.6e-21 104.4 99 59.6
SalBow8G4549 Salvia bowleyana HOM05D006168 ORTHO05D007602 7.6e-21 104.4 144 48.6
arahy.Tifrunner.gnm1.ann1.52MA05 Arachis hypogaea HOM05D006168 ORTHO05D007602 1.0e-20 104.0 145 48.3
Mapoly0133s0024 Marchantia polymorpha HOM05D006168 ORTHO05D007602 2.9e-20 102.4 132 48.5
Pp3c19_22150 Physcomitrium patens HOM05D006168 ORTHO05D007602 3.8e-20 102.1 155 43.9
FAN25G2877 Fragaria x ananassa HOM05D006168 ORTHO05D007602 3.2e-19 99.0 147 44.9
FvH4_3g03920 Fragaria vesca HOM05D006168 ORTHO05D007602 9.3e-19 97.4 146 44.5
FAN11G1802 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.2e-18 97.1 146 44.5
FAN16G2203 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.6e-18 96.7 148 42.6
FAN21G2556 Fragaria x ananassa HOM05D006168 ORTHO05D007602 1.6e-18 96.7 150 43.3
SMO147G0110 Selaginella moellendorffii HOM05D006168 ORTHO05D007602 1.6e-18 96.7 139 46.8
A03p33970 Brassica napus HOM05D006168 ORTHO05D007602 6.0e-18 94.7 67 77.6
C03p41350 Brassica napus HOM05D006168 ORTHO05D007602 2.3e-17 92.8 108 58.3
Cre12.g518300 Chlamydomonas reinhardtii HOM05D006168 ORTHO05D007602 2.5e-16 89.4 131 45.0
CBR_g57849 Chara braunii HOM05D006168 ORTHO05D007602 1.6e-15 86.7 108 45.4
Sc15g0000010 Simmondsia chinensis HOM05D006168 ORTHO05D007602 8.2e-15 84.3 99 51.5
TPR.G8871 Trifolium pratense HOM05D006168 ORTHO05D007602 4.1e-14 82.0 54 74.1
FAN13G0455 Fragaria x ananassa HOM05D006168 ORTHO05D007602 2.2e-12 76.3 106 46.2
BcaB04g19283 Brassica carinata HOM05D006168 ORTHO05D007602 1.9e-11 73.2 60 71.7
TPR.G35595 Trifolium pratense HOM05D006168 ORTHO05D007602 5.5e-11 71.6 105 43.8
arahy.Tifrunner.gnm1.ann1.S1M3RU Arachis hypogaea HOM05D006168 ORTHO05D007602 9.4e-11 70.9 120 40.8
MCO12G027 Micromonas commoda HOM05D006168 ORTHO05D007602 1.0e-09 67.4 126 39.7
BolC1t02697H Brassica oleracea HOM05D004241 ORTHO05D018769 3.1e-06 55.8 60 63.3


User provided reference genes

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