Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 2208.3 1114 100.0
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1892.5 1107 87.4
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1892.1 1121 86.4
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1861.7 1121 85.2
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1847.8 1121 84.7
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1752.3 1136 77.6
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1740.7 1136 77.8
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1728.4 1135 77.2
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1719.9 1136 76.6
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1714.9 1137 76.6
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1713.7 1136 76.1
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1713.0 1136 76.4
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1712.6 1137 76.6
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1699.9 1138 76.0
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1688.3 1136 75.4
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1516.9 1138 67.8
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1509.6 1133 67.8
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1501.5 1142 67.5
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1496.1 1141 67.4
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1481.1 1139 66.4
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1472.6 1140 66.1
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1472.2 1142 68.7
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1464.9 1145 65.4
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1464.5 1142 65.2
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1461.4 1141 65.1
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1449.1 1136 65.2
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1448.3 1139 64.5
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1446.8 1141 65.4
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1444.5 1138 65.4
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1444.1 1144 65.2
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1443.7 1138 65.8
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1443.3 1141 64.5
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1439.5 1145 64.7
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1436.4 1140 64.5
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1434.1 1140 64.8
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1434.1 1142 65.2
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1422.9 1139 62.7
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1422.9 1140 63.5
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1422.1 1115 64.8
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1413.7 1140 63.7
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1413.3 1132 64.7
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1411.4 1140 63.3
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1406.3 1142 61.8
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1406.0 1139 63.7
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1402.1 1146 63.2
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1395.6 1137 62.5
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1392.9 1137 62.4
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1391.7 1110 64.6
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1388.6 1137 62.1
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1388.6 1137 62.3
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1385.2 1137 62.2
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1382.5 1137 62.0
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1380.2 1142 61.9
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1375.5 1147 61.4
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1374.8 1136 61.9
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1371.7 1142 62.5
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1369.0 1139 61.4
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1363.6 1137 61.7
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1362.1 1144 61.9
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1361.7 1097 63.4
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1360.5 1154 60.4
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1354.0 1135 60.7
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1353.6 815 85.6
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1352.0 1136 60.8
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1350.1 1138 60.1
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1349.7 1141 60.1
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1348.6 1147 61.6
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1347.8 1137 61.4
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1343.2 1137 61.4
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1342.4 1138 59.8
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1339.3 1144 60.8
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1330.1 1136 60.4
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1329.3 1134 59.6
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1327.4 1137 59.7
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1327.4 1145 60.7
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1326.6 1143 60.3
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1326.2 1143 59.2
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1323.1 1140 59.7
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1321.2 1144 60.5
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1303.9 1135 58.5
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1298.5 1117 60.6
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1292.3 1144 58.8
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1290.0 1139 60.2
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1286.9 1135 58.2
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1285.8 1132 57.5
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1277.7 1136 57.9
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1276.5 1142 57.2
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1275.4 1136 57.7
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1274.6 1151 58.3
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1271.1 1229 55.2
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1269.6 1140 59.6
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1253.4 1047 60.9
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1196.0 1134 55.6
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1170.2 1242 52.9
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1167.1 1141 55.0
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1164.4 1141 54.2
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1160.2 1143 53.0
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1148.7 1048 63.5
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1146.7 1147 52.6
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1144.4 953 62.1
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1121.3 953 60.1
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1111.3 1149 51.8
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1081.2 1053 55.2
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 7.1e-276 954.5 837 61.6
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 5.6e-265 918.3 1100 47.6
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 1.4e-260 903.7 738 62.1
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 6.7e-258 894.8 895 54.1
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 6.7e-250 868.2 1109 46.1
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.0e-242 842.8 1109 45.3
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 3.1e-239 832.8 1109 44.8
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 7.0e-231 805.1 1097 44.9
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.9e-229 799.7 1170 40.0
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 5.5e-228 795.4 1166 38.9
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 4.7e-219 765.8 1186 40.0
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 2.7e-214 750.0 632 60.8
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 2.8e-208 729.9 1144 37.2
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.1e-194 684.9 589 61.3
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.2e-175 619.8 721 49.0
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 5.4e-175 619.4 1153 34.4
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 9.0e-170 602.1 554 56.5
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.9e-160 570.5 572 52.6
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.4e-160 569.3 536 55.2
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 3.3e-148 530.4 399 66.7
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.1e-135 488.8 486 52.5
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.4e-133 481.9 439 58.5
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 1.3e-107 395.6 321 62.9
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 5.9e-97 360.1 297 63.0
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.1e-70 271.9 210 65.7
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.2e-67 261.9 267 50.2
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.5e-63 248.4 187 69.5
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.1e-50 206.5 204 56.4
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 5.1e-48 197.6 470 31.3
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 6.6e-48 197.2 511 31.3
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 2.0e-44 185.7 630 24.9
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 7.1e-42 177.2 181 53.6
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 3.0e-24 118.6 96 61.5
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 2.8e-22 112.1 90 64.4
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 8.2e-22 110.5 78 66.7
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 3.2e-18 98.6 63 77.8
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 4.6e-17 94.7 79 65.8
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 5.7e-15 87.8 78 56.4
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 9.7e-15 87.0 54 77.8
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 2.8e-14 85.5 54 75.9
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 4.8e-14 84.7 542 21.4
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 6.9e-13 80.9 78 51.3
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.3e-11 76.6 72 50.0
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.0e-08 67.0 327 24.5
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 2.6e-07 62.4 39 74.4
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 2.6e-07 62.4 39 74.4
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 2.2e-06 59.3 62 46.8


User provided reference genes

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