Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03790 Schrenkiella parvula HOM05D005874 ORTHO05D007206 2.3e-132 475.7 264 100.0
AL3G15310 Arabidopsis lyrata HOM05D005874 ORTHO05D007206 1.2e-109 400.2 264 86.4
BraA05t22992Z Brassica rapa HOM05D005874 ORTHO05D007206 3.6e-109 398.7 261 87.0
A05p42610 Brassica napus HOM05D005874 ORTHO05D007206 1.0e-108 397.1 261 86.6
Carub.0003s0419 Capsella rubella HOM05D005874 ORTHO05D007206 1.0e-108 397.1 264 86.4
Thhalv10020879m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 8.8e-108 394.0 264 87.1
AT3G04970 Arabidopsis thaliana HOM05D005874 ORTHO05D007206 9.7e-107 390.6 264 85.6
C05p62300 Brassica napus HOM05D005874 ORTHO05D007206 8.0e-101 370.9 262 83.6
BcaC05g29976 Brassica carinata HOM05D005874 ORTHO05D007206 1.0e-100 370.5 262 82.8
BolC5t34886H Brassica oleracea HOM05D005874 ORTHO05D007206 8.8e-100 367.5 262 82.8
CARHR079280 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.7e-98 363.2 265 80.8
Sp2g20520 Schrenkiella parvula HOM05D005874 ORTHO05D007206 1.6e-93 346.7 264 78.0
Aa31LG5G15480 Aethionema arabicum HOM05D005874 ORTHO05D007206 2.1e-93 346.3 261 68.2
BcaC04g23688 Brassica carinata HOM05D005874 ORTHO05D007206 8.8e-92 340.9 251 70.9
CARHR185900 Cardamine hirsuta HOM05D005874 ORTHO05D007206 1.2e-91 340.5 264 76.9
BcaC04g23685 Brassica carinata HOM05D005874 ORTHO05D007206 1.3e-90 337.0 251 69.7
A09p05220 Brassica napus HOM05D005874 ORTHO05D007206 2.2e-90 336.3 251 69.3
C09p05680 Brassica napus HOM05D005874 ORTHO05D007206 2.2e-90 336.3 251 69.3
BolC9t53497H Brassica oleracea HOM05D005874 ORTHO05D007206 2.2e-90 336.3 251 69.3
BraA09t36161Z Brassica rapa HOM05D005874 ORTHO05D007206 8.3e-90 334.3 251 69.3
Thhalv10004370m.g Eutrema salsugineum HOM05D005874 ORTHO05D007206 9.1e-89 330.9 251 76.9
THA.LOC104818669 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 5.9e-88 328.2 262 74.8
THA.LOC104802814 Tarenaya hassleriana HOM05D005874 ORTHO05D007206 2.2e-87 326.2 260 75.4
CANSAT54G0668 Cannabis sativa HOM05D005874 ORTHO05D007206 4.2e-86 322.0 264 71.6
Thecc.05G296800 Theobroma cacao HOM05D005874 ORTHO05D007206 1.0e-84 317.4 260 70.4
Hma1.2p1_0071F.1_g037960 Hydrangea macrophylla HOM05D005874 ORTHO05D007206 1.5e-83 313.5 268 60.1
TAR362G0076 Trochodendron aralioides HOM05D005874 ORTHO05D007206 7.5e-83 311.2 264 68.6
Cfa006515 Carpinus fangiana HOM05D005874 ORTHO05D007206 4.9e-82 308.5 262 59.5
GSVIVG01022009001 Vitis vinifera HOM05D005874 ORTHO05D007206 6.3e-82 308.1 262 61.1
CiPaw.07G012300 Carya illinoinensis HOM05D005874 ORTHO05D007206 1.2e-80 303.9 253 61.3
Gohir.D13G178100 Gossypium hirsutum HOM05D005874 ORTHO05D007206 1.2e-80 303.9 253 65.2
QL03p002925 Quercus lobata HOM05D005874 ORTHO05D007206 7.7e-80 301.2 269 59.5
Gorai.013G203400 Gossypium raimondii HOM05D005874 ORTHO05D007206 1.0e-79 300.8 253 64.8
Eucgr.B02032 Eucalyptus grandis HOM05D005874 ORTHO05D007206 1.3e-79 300.4 265 59.6
QL03p003516 Quercus lobata HOM05D005874 ORTHO05D007206 1.3e-79 300.4 269 59.1
CsaV3_3G003940 Cucumis sativus L. HOM05D005874 ORTHO05D007206 3.8e-79 298.9 260 59.2
Sc06g0003460 Simmondsia chinensis HOM05D005874 ORTHO05D007206 5.0e-79 298.5 258 59.3
Actinidia05739 Actinidia chinensis HOM05D005874 ORTHO05D007206 1.1e-78 297.4 263 59.7
MELO3C014079.2 Cucumis melo HOM05D005874 ORTHO05D007206 1.5e-78 297.0 260 58.5
MD12G1227400 Malus domestica HOM05D005874 ORTHO05D007206 2.5e-78 296.2 248 61.3
Prupe.6G333100 Prunus persica HOM05D005874 ORTHO05D007206 2.5e-78 296.2 251 59.8
Cc02_g32810 Coffea canephora HOM05D005874 ORTHO05D007206 9.5e-78 294.3 258 65.5
FvH4_6g04920 Fragaria vesca HOM05D005874 ORTHO05D007206 9.5e-78 294.3 262 58.4
FAN05G4189 Fragaria x ananassa HOM05D005874 ORTHO05D007206 9.5e-78 294.3 262 58.8
MD04G1213200 Malus domestica HOM05D005874 ORTHO05D007206 1.2e-77 293.9 251 59.8
Phvul.006G096000 Phaseolus vulgaris HOM05D005874 ORTHO05D007206 1.2e-77 293.9 264 58.3
Glyma.03G242000 Glycine max HOM05D005874 ORTHO05D007206 2.1e-77 293.1 260 58.1
Lj1g0003731 Lotus japonicus HOM05D005874 ORTHO05D007206 2.1e-77 293.1 263 66.5
FAN05G2497 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.8e-77 292.7 262 58.4
Actinidia30901 Actinidia chinensis HOM05D005874 ORTHO05D007206 3.6e-77 292.4 262 62.2
CAN.G56.14 Capsicum annuum HOM05D005874 ORTHO05D007206 4.7e-77 292.0 249 59.8
VMungo0540G0326 Vigna mungo HOM05D005874 ORTHO05D007206 4.7e-77 292.0 256 59.0
PSO832G1738 Papaver somniferum HOM05D005874 ORTHO05D007206 6.1e-77 291.6 253 59.3
TWI36G0483 Tripterygium wilfordii HOM05D005874 ORTHO05D007206 1.0e-76 290.8 262 60.7
Nn4g26084 Nelumbo nucifera HOM05D005874 ORTHO05D007206 1.4e-76 290.4 253 58.1
ECA232G3849 Erigeron canadensis HOM05D005874 ORTHO05D007206 1.8e-76 290.0 261 60.5
Ciclev10001418m.g Citrus clementina HOM05D005874 ORTHO05D007206 3.0e-76 289.3 264 66.3
Glyma.19G239400 Glycine max HOM05D005874 ORTHO05D007206 3.0e-76 289.3 260 57.3
CSS0017417 Camellia sinensis var. sinensis HOM05D005874 ORTHO05D007206 4.0e-76 288.9 293 54.9
RcHm_v2.0_Chr3g0453421 Rosa chinensis HOM05D005874 ORTHO05D007206 4.0e-76 288.9 262 58.0
TPR.G21789 Trifolium pratense HOM05D005874 ORTHO05D007206 4.0e-76 288.9 259 55.6
arahy.Tifrunner.gnm1.ann1.QVQE66 Arachis hypogaea HOM05D005874 ORTHO05D007206 6.8e-76 288.1 260 60.8
FAN09G3845 Fragaria x ananassa HOM05D005874 ORTHO05D007206 6.8e-76 288.1 262 57.6
Rhsim07G0178000 Rhododendron simsii HOM05D005874 ORTHO05D007206 6.8e-76 288.1 252 68.3
Solyc08g029200.3 Solanum lycopersicum HOM05D005874 ORTHO05D007206 8.9e-76 287.7 249 58.2
Sopen08g010120 Solanum pennellii HOM05D005874 ORTHO05D007206 8.9e-76 287.7 249 58.2
MSTRG.10544 Avicennia marina HOM05D005874 ORTHO05D007206 1.5e-75 287.0 251 57.0
Lalb_Chr15g0077001 Lupinus albus HOM05D005874 ORTHO05D007206 1.5e-75 287.0 249 58.6
arahy.Tifrunner.gnm1.ann1.MWM6LR Arachis hypogaea HOM05D005874 ORTHO05D007206 2.0e-75 286.6 260 60.4
Oeu052135.1 Olea europaea HOM05D005874 ORTHO05D007206 2.0e-75 286.6 251 65.3
BcaB04g19660 Brassica carinata HOM05D005874 ORTHO05D007206 2.6e-75 286.2 243 63.4
Medtr7g114080 Medicago truncatula HOM05D005874 ORTHO05D007206 2.6e-75 286.2 260 56.2
Duzib128G0205 Durio zibethinus HOM05D005874 ORTHO05D007206 5.7e-75 285.0 238 70.6
Psat3g009240 Pisum sativum HOM05D005874 ORTHO05D007206 1.7e-74 283.5 260 55.4
HanXRQChr09g0254601 Helianthus annuus HOM05D005874 ORTHO05D007206 3.7e-74 282.3 254 55.9
Aqoxy5G00596 Aquilegia oxysepala HOM05D005874 ORTHO05D007206 8.3e-74 281.2 252 60.7
Migut.L01513 Erythranthe guttata HOM05D005874 ORTHO05D007206 1.8e-73 280.0 248 56.9
Lsat_1_v5_gn_4_139320 Lactuca sativa HOM05D005874 ORTHO05D007206 1.8e-73 280.0 261 55.6
COL.COLO4_13564 Corchorus olitorius HOM05D005874 ORTHO05D007206 2.4e-73 279.6 193 81.9
Ah.04g159940 Amaranthus hybridus HOM05D005874 ORTHO05D007206 1.2e-72 277.3 264 56.1
HPP92_003153 Vanilla planifolia HOM05D005874 ORTHO05D007206 1.2e-72 277.3 249 54.6
PGR031G1977 Punica granatum HOM05D005874 ORTHO05D007206 2.7e-72 276.2 255 65.1
FAN14G1317 Fragaria x ananassa HOM05D005874 ORTHO05D007206 2.3e-71 273.1 262 56.5
Dinv22927 Davidia involucrata HOM05D005874 ORTHO05D007206 3.9e-71 272.3 262 55.3
ATR0487G009 Amborella trichopoda HOM05D005874 ORTHO05D007206 4.3e-70 268.9 257 54.9
Atru.chr2.537 Acer truncatum HOM05D005874 ORTHO05D007206 9.5e-70 267.7 227 60.4
BcaB04g19663 Brassica carinata HOM05D005874 ORTHO05D007206 2.1e-69 266.5 251 60.2
PSO210G2121 Papaver somniferum HOM05D005874 ORTHO05D007206 6.2e-69 265.0 193 66.8
Nitab4.5_0005924g0020 Nicotiana tabacum HOM05D005874 ORTHO05D007206 6.8e-68 261.5 288 50.0
unitig_578.g16415 Utricularia gibba HOM05D005874 ORTHO05D007206 6.8e-68 261.5 247 53.8
vmacro05048 Vaccinium macrocarpon HOM05D005874 ORTHO05D007206 1.5e-67 260.4 300 57.0
Os03g0363900 Oryza sativa ssp. japonica HOM05D005874 ORTHO05D007206 2.6e-67 259.6 249 54.2
CDE12G0821 Ceratophyllum demersum HOM05D005874 ORTHO05D007206 7.5e-67 258.1 253 51.8
EL10Ac4g09284 Beta vulgaris HOM05D005874 ORTHO05D007206 3.7e-66 255.8 261 59.4
Cpa.g.sc84.114 Carica papaya HOM05D005874 ORTHO05D007206 5.4e-65 251.9 262 54.6
DCAR_001932 Daucus carota HOM05D005638 ORTHO05D006913 4.6e-64 248.8 235 53.6
Dinv40230 Davidia involucrata HOM05D005874 ORTHO05D007206 1.1e-60 237.7 164 68.9
SEGI_36862 Sequoiadendron giganteum HOM05D005874 ORTHO05D007206 9.8e-59 231.1 260 45.4
Lj9A677G37 Lonicera japonica HOM05D005874 ORTHO05D007206 1.3e-55 220.7 253 55.7
Gohir.A13G172200 Gossypium hirsutum HOM05D005874 ORTHO05D007206 7.3e-54 214.9 253 52.2
Atru.chr2.564 Acer truncatum HOM05D005874 ORTHO05D007206 8.9e-52 208.0 162 62.3
Hund07023 Selenicereus undatus HOM05D005874 ORTHO05D007206 8.9e-52 208.0 264 45.8
Zm00001eb394310 Zea mays HOM05D005874 ORTHO05D007206 1.2e-51 207.6 260 44.2
AUR62000904 Chenopodium quinoa HOM05D005874 ORTHO05D007206 9.9e-51 204.5 194 56.7
Haze_04267 Corylus avellana HOM05D005874 ORTHO05D007206 2.3e-47 193.4 258 43.4
Peaxi162Scf00071g00714 Petunia axillaris HOM05D005874 ORTHO05D007206 8.6e-47 191.4 250 44.0
Mapoly0004s0142 Marchantia polymorpha HOM05D005874 ORTHO05D007206 3.6e-45 186.0 256 44.5
Aa31LG11G9040 Aethionema arabicum HOM05D005874 ORTHO05D007206 2.4e-44 183.3 165 61.2
Pp3c9_17640 Physcomitrium patens HOM05D005874 ORTHO05D007206 5.8e-43 178.7 252 48.0
Manes.08G125000 Manihot esculenta HOM05D005874 ORTHO05D007206 1.9e-41 173.7 125 81.6
AUR62005071 Chenopodium quinoa HOM05D005874 ORTHO05D007206 4.6e-40 169.1 165 54.5
SGA_v2.0_scaffold21G09411 Striga asiatica HOM05D005874 ORTHO05D007206 1.0e-39 167.9 233 44.2
Ca_09385_v3 Cicer arietinum L. HOM05D005874 ORTHO05D007206 5.1e-39 165.6 113 69.9
Sed0024795 Sechium edule HOM05D005083 ORTHO05D006310 1.1e-38 164.5 123 62.6
Potri.005G041000 Populus trichocarpa HOM05D005874 ORTHO05D007206 7.3e-38 161.8 123 80.5
Sabra05G0040000 Salix brachista HOM05D005874 ORTHO05D007206 7.6e-35 151.8 332 35.2
QL03p003187 Quercus lobata HOM05D005874 ORTHO05D007206 2.2e-34 150.2 193 48.2
FAN14G2574 Fragaria x ananassa HOM05D005874 ORTHO05D007206 1.2e-32 144.4 134 58.2
Duzib192G0784 Durio zibethinus HOM05D005874 ORTHO05D007206 2.7e-32 143.3 153 51.6
Lj9A680G39 Lonicera japonica HOM05D005874 ORTHO05D007206 2.7e-32 143.3 123 58.5
Duzib192G0912 Durio zibethinus HOM05D005874 ORTHO05D007206 7.9e-32 141.7 148 53.4
Duzib192G0855 Durio zibethinus HOM05D005874 ORTHO05D007206 8.7e-31 138.3 149 52.3
SMO356G0262 Selaginella moellendorffii HOM05D005874 ORTHO05D007206 6.2e-29 132.1 165 48.5
CBR_g48996 Chara braunii HOM05D000019 ORTHO05D001702 1.5e-27 127.5 190 50.0
Cre02.g090100 Chlamydomonas reinhardtii HOM05D005874 ORTHO05D007206 1.5e-14 84.3 171 35.1
PRCOL_00005730 Prasinoderma coloniale HOM05D005874 ORTHO05D007206 1.3e-13 81.3 266 27.8
Duzib177G0334 Durio zibethinus HOM05D000092 ORTHO05D000042 9.0e-12 75.1 131 36.6
Nitab4.5_0000176g0140 Nicotiana tabacum HOM05D005874 ORTHO05D007206 4.5e-11 72.8 39 79.5
AagrBONN_evm.TU.Sc2ySwM_362.837 Anthoceros agrestis HOM05D005874 ORTHO05D007206 3.2e-09 66.6 74 41.9
Gorai.004G244300 Gossypium raimondii HOM05D005874 ORTHO05D007206 3.0e-07 60.1 38 63.2


User provided reference genes

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