Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.3e-249 865.1 448 100.0
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 3.3e-224 781.6 448 89.3
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 3.8e-212 741.5 448 84.8
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 1.1e-211 740.0 452 84.1
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 5.7e-208 727.6 448 84.6
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 8.2e-207 723.8 442 84.8
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 1.5e-205 719.5 448 83.3
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 1.5e-205 719.5 448 83.3
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 1.4e-203 713.0 444 82.0
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 5.5e-203 711.1 448 82.8
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.8e-201 706.1 447 82.8
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 7.2e-195 684.1 443 81.3
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.8e-185 652.9 448 75.0
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.8e-169 599.7 448 69.2
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 4.9e-167 591.7 451 67.4
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 6.0e-165 584.7 449 67.7
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 2.1e-162 576.2 451 66.3
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 2.8e-162 575.9 451 66.3
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 1.4e-161 573.5 451 66.1
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 1.4e-161 573.5 451 66.1
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 1.8e-161 573.2 451 66.1
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 3.4e-160 568.9 454 65.9
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 3.4e-160 568.9 451 65.9
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 4.4e-160 568.5 450 67.1
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 9.2e-158 560.8 449 66.4
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 5.2e-153 545.0 457 64.1
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 3.5e-149 532.3 393 67.7
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 6.6e-132 474.9 459 58.0
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 5.3e-129 465.3 458 55.2
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.2e-128 464.2 460 56.7
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 2.9e-127 459.5 407 60.7
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 6.4e-127 458.4 457 54.5
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 3.2e-126 456.1 458 55.0
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.2e-126 456.1 457 54.0
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 4.2e-126 455.7 458 55.0
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 4.2e-126 455.7 455 53.8
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 9.3e-126 454.5 457 54.5
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 1.6e-125 453.8 463 56.4
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 6.0e-125 451.8 404 58.2
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 6.0e-125 451.8 403 58.3
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 1.8e-124 450.3 404 58.2
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 1.5e-123 447.2 405 58.5
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.9e-123 446.8 404 58.2
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 1.9e-123 446.8 460 55.2
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 4.3e-123 445.7 454 55.5
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 4.3e-123 445.7 464 53.4
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 7.4e-123 444.9 453 56.1
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 1.6e-122 443.7 408 58.3
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 2.8e-122 443.0 410 58.3
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 6.2e-122 441.8 416 57.5
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 8.1e-122 441.4 460 54.8
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 1.4e-121 440.7 453 54.1
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 2.0e-120 436.8 436 56.4
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 4.9e-119 432.2 396 57.8
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 3.2e-118 429.5 463 53.3
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 6.0e-117 425.2 395 56.2
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.0e-116 424.5 455 51.4
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 2.3e-116 423.3 461 51.8
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 3.0e-116 422.9 440 53.0
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 1.5e-115 420.6 445 52.8
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 1.9e-115 420.2 429 53.4
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 2.5e-115 419.9 417 55.6
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 1.6e-114 417.2 436 53.2
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 6.2e-114 415.2 434 52.8
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 1.2e-112 411.0 455 51.4
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 1.1e-110 404.4 424 53.5
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 2.5e-110 403.3 447 49.2
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 1.8e-108 397.1 425 52.9
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 2.3e-108 396.7 455 51.2
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 1.9e-107 393.7 461 48.2
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 5.7e-107 392.1 436 51.1
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 5.7e-107 392.1 414 50.2
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 9.7e-107 391.3 395 52.7
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.3e-106 391.0 432 48.8
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.1e-105 386.3 455 49.0
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 9.0e-105 384.8 455 48.8
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 4.5e-104 382.5 392 51.3
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 3.8e-103 379.4 452 49.6
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 3.8e-103 379.4 458 47.8
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 5.0e-103 379.0 452 48.5
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 7.2e-102 375.2 447 48.3
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 1.6e-101 374.0 449 49.7
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 1.0e-100 371.3 392 51.0
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 3.0e-100 369.8 447 47.9
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 6.7e-100 368.6 421 49.6
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 8.8e-100 368.2 331 57.1
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 2.0e-99 367.1 458 46.9
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 9.7e-99 364.8 468 45.1
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 4.8e-98 362.5 393 51.4
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 1.5e-96 357.5 344 54.9
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 7.7e-96 355.1 470 45.7
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 1.4e-94 350.9 391 50.9
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 1.4e-94 350.9 458 45.0
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 3.2e-94 349.7 381 50.1
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 2.3e-92 343.6 397 47.9
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 8.8e-92 341.7 464 43.8
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 8.8e-92 341.7 462 45.0
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.5e-91 340.9 462 44.6
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 5.0e-87 325.9 351 51.9
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 2.3e-84 317.0 350 51.7
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 2.0e-83 313.9 315 55.2
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 1.7e-82 310.8 431 44.8
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 4.1e-81 306.2 434 45.4
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 4.5e-80 302.8 365 47.9
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 4.0e-76 289.7 407 44.2
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 5.3e-73 279.3 447 38.9
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 4.5e-72 276.2 341 48.1
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 1.3e-71 274.6 365 45.8
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 7.7e-64 248.8 255 55.3
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.7e-63 247.7 342 45.6
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 3.0e-60 236.9 410 36.6
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 7.5e-59 232.3 166 64.5
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 6.3e-58 229.2 231 53.7
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.1e-57 228.4 304 47.4
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 1.3e-55 221.5 416 36.3
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 1.6e-53 214.5 435 38.6
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 4.0e-52 209.9 266 44.7
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 4.4e-51 206.5 391 36.3
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 7.0e-49 199.1 392 36.5
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 3.9e-47 193.4 407 34.9
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 2.4e-41 174.1 395 32.9
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 3.0e-23 114.0 422 27.7
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 7.6e-19 99.4 215 32.6
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 6.0e-16 89.7 164 32.9
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 8.7e-15 85.9 83 54.2
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 1.7e-10 71.6 108 45.4
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 2.2e-10 71.2 154 31.2
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 1.1e-09 68.9 385 23.6
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 2.3e-07 61.2 79 46.8


User provided reference genes

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