Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 0.0e+00 2286.5 1170 100.0
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 0.0e+00 2149.0 1170 93.8
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 0.0e+00 2144.4 1169 93.8
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 0.0e+00 2143.2 1165 94.1
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 2140.9 1165 93.9
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 0.0e+00 2139.0 1165 94.0
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 0.0e+00 2129.8 1178 93.0
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 2124.4 1165 93.2
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 0.0e+00 2106.6 1144 94.1
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 0.0e+00 2044.6 1170 90.3
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 0.0e+00 2011.9 1185 87.0
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1989.5 1175 88.8
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 0.0e+00 1981.5 1170 86.1
BcaC05g29938 Brassica carinata HOM05D000329 ORTHO05D005330 0.0e+00 1912.1 1165 86.9
CARHR078650 Cardamine hirsuta HOM05D000329 ORTHO05D005330 0.0e+00 1706.0 929 93.9
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 0.0e+00 1692.6 1158 74.3
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 0.0e+00 1675.2 1178 73.1
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 0.0e+00 1670.6 1167 73.4
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1647.9 1175 71.9
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1647.1 1177 71.1
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 0.0e+00 1641.3 1166 72.1
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 0.0e+00 1640.9 1179 70.7
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1640.9 1165 72.4
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 0.0e+00 1640.6 1165 72.3
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 0.0e+00 1609.0 1161 70.6
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 0.0e+00 1608.2 1170 69.9
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 0.0e+00 1607.0 1168 69.7
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 0.0e+00 1588.9 1176 69.6
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 0.0e+00 1588.2 1168 69.3
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 0.0e+00 1584.3 1149 69.2
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1582.8 1174 68.7
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 0.0e+00 1577.4 1211 67.7
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 0.0e+00 1573.9 1155 68.2
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 0.0e+00 1572.8 1158 69.5
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 0.0e+00 1571.6 1156 68.7
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 0.0e+00 1566.2 1156 68.4
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 0.0e+00 1566.2 1179 68.3
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 0.0e+00 1564.7 1162 68.2
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 0.0e+00 1560.0 1125 70.5
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 0.0e+00 1557.3 1158 68.0
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 0.0e+00 1555.8 1168 68.1
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 0.0e+00 1555.8 1155 67.8
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1553.5 1171 68.2
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1549.6 1168 67.7
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1541.9 1181 67.0
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 0.0e+00 1540.8 1165 69.0
Lalb_Chr18g0044041 Lupinus albus HOM05D000329 ORTHO05D005330 0.0e+00 1540.4 1175 66.6
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1536.2 1199 66.1
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 0.0e+00 1535.8 1170 66.7
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 0.0e+00 1523.5 1162 66.0
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 0.0e+00 1502.6 1165 64.9
Nn1g02807 Nelumbo nucifera HOM05D000329 ORTHO05D005330 0.0e+00 1500.7 1159 66.0
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 0.0e+00 1492.6 1152 66.7
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 0.0e+00 1491.1 1113 67.9
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 0.0e+00 1488.4 1164 66.1
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 0.0e+00 1487.6 1177 64.8
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1484.2 1165 65.8
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1478.4 1160 64.6
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 0.0e+00 1476.5 1095 68.0
Peaxi162Scf00304g10137 Petunia axillaris HOM05D000329 ORTHO05D005330 0.0e+00 1476.1 1144 64.8
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 0.0e+00 1474.1 1156 65.0
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1467.2 1214 63.5
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 0.0e+00 1467.2 1208 62.5
Oeu014525.1 Olea europaea HOM05D000329 ORTHO05D005330 0.0e+00 1464.1 1162 64.3
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 0.0e+00 1462.6 1162 63.0
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 0.0e+00 1458.4 1160 64.0
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 0.0e+00 1456.0 1139 65.2
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 0.0e+00 1455.7 1048 69.8
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 0.0e+00 1448.7 1290 60.0
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 0.0e+00 1437.9 1119 66.9
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 0.0e+00 1437.2 1162 63.1
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 0.0e+00 1434.5 1063 67.7
Aqoxy2G03671 Aquilegia oxysepala HOM05D000329 ORTHO05D005330 0.0e+00 1426.8 1155 63.4
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 0.0e+00 1426.4 1191 63.4
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 0.0e+00 1424.1 1157 62.5
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 0.0e+00 1422.1 1147 63.3
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 0.0e+00 1418.3 1165 63.9
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 0.0e+00 1392.1 1070 65.1
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 0.0e+00 1362.1 1158 62.8
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 0.0e+00 1330.1 1006 67.0
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 0.0e+00 1326.6 1165 59.5
Zm00001eb045870 Zea mays HOM05D000329 ORTHO05D005330 0.0e+00 1189.5 1165 53.6
Os10g0477000 Oryza sativa ssp. japonica HOM05D000329 ORTHO05D005330 0.0e+00 1176.8 1166 53.7
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 0.0e+00 1145.6 868 67.9
Mapoly0091s0014 Marchantia polymorpha HOM05D000329 ORTHO05D005330 0.0e+00 1107.0 1186 50.7
Pp3c6_27570 Physcomitrium patens HOM05D000329 ORTHO05D005330 0.0e+00 1092.4 1181 50.2
Eucgr.H04230 Eucalyptus grandis HOM05D000329 ORTHO05D005330 2.3e-301 1039.3 790 67.5
AagrBONN_evm.TU.Sc2ySwM_228.3774 Anthoceros agrestis HOM05D000329 ORTHO05D005330 3.4e-297 1025.4 1119 49.2
Sed0007400 Sechium edule HOM05D000329 ORTHO05D005330 7.7e-297 1024.2 826 63.4
Solyc12g027580.3 Solanum lycopersicum HOM05D000329 ORTHO05D005330 2.3e-293 1012.7 774 66.8
Cpa.g.sc162.46 Carica papaya HOM05D000329 ORTHO05D005330 1.0e-288 997.3 715 72.6
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 6.1e-270 934.9 723 66.8
SMO356G0150 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 3.8e-264 915.6 1171 44.7
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 5.9e-257 891.7 1206 45.1
VMungo0540G0180 Vigna mungo HOM05D000329 ORTHO05D005330 4.3e-247 859.0 623 69.3
CBR_g8586 Chara braunii HOM05D000329 ORTHO05D005330 3.9e-240 835.9 1201 40.7
QL03p030502 Quercus lobata HOM05D000329 ORTHO05D005330 1.3e-200 704.5 462 76.8
HPP92_025585 Vanilla planifolia HOM05D000329 ORTHO05D005330 4.5e-196 689.5 833 46.8
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 8.2e-182 642.1 534 62.5
Hma1.2p1_1512F.1_g287930 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 1.7e-179 634.4 441 72.3
SMO002G0004 Selaginella moellendorffii HOM05D000329 ORTHO05D005330 9.4e-178 628.6 1143 36.2
ClCG06G009520 Citrullus lanatus HOM05D000329 ORTHO05D005330 8.0e-169 599.0 445 68.5
SalBow6G5354 Salvia bowleyana HOM05D000329 ORTHO05D005330 2.8e-166 590.5 439 67.0
Pp3c16_19950 Physcomitrium patens HOM05D000329 ORTHO05D005330 1.1e-162 578.6 832 41.5
Pp3c16_19964 Physcomitrium patens HOM05D000329 ORTHO05D005330 1.1e-162 578.6 832 41.5
Hma1.2p1_1512F.1_g287950 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 5.7e-159 566.2 478 62.1
Nitab4.5_0003285g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 9.5e-154 548.9 511 58.3
Nitab4.5_0000432g0100 Nicotiana tabacum HOM05D000329 ORTHO05D005330 5.7e-143 513.1 461 57.0
Cpa.g.sc162.43 Carica papaya HOM05D000329 ORTHO05D005330 4.4e-135 486.9 322 71.4
CAN.G155.4 Capsicum annuum HOM05D000329 ORTHO05D005330 6.2e-129 466.5 333 69.4
CDE08G1568 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 3.7e-126 457.2 453 54.7
DCAR_000980 Daucus carota HOM05D000329 ORTHO05D005330 2.4e-125 454.5 410 60.0
Nitab4.5_0003285g0070 Nicotiana tabacum HOM05D000329 ORTHO05D005330 2.1e-113 414.8 332 63.0
Haze_04433 Corylus avellana HOM05D000329 ORTHO05D005330 9.0e-112 409.5 275 76.7
CDE08G1167 Ceratophyllum demersum HOM05D000329 ORTHO05D005330 1.4e-109 402.1 596 41.6
Haze_04432 Corylus avellana HOM05D000329 ORTHO05D005330 1.4e-109 402.1 314 66.2
Sabra19G0028500 Salix brachista HOM05D000329 ORTHO05D000833 2.7e-108 397.9 267 75.3
Nitab4.5_0000432g0090 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.8e-91 342.0 253 67.2
ClCG06G009480 Citrullus lanatus HOM05D000329 ORTHO05D005330 5.6e-90 337.0 392 49.7
arahy.Tifrunner.gnm1.ann1.I5XT77 Arachis hypogaea HOM05D000329 ORTHO05D005330 2.4e-88 331.6 253 67.6
MBI10_g44932_MAGBIO Magnolia biondii HOM05D000329 ORTHO05D005330 1.8e-80 305.4 442 43.9
HPP92_025571 Vanilla planifolia HOM05D000329 ORTHO05D005330 2.0e-79 302.0 326 50.3
Hma1.2p1_3491F.1_g336370 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 8.5e-78 296.6 213 63.8
Nitab4.5_0003285g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.6e-76 292.4 274 55.8
Cre09.g404350 Chlamydomonas reinhardtii HOM05D000329 ORTHO05D005330 4.1e-72 277.7 1383 24.2
Nitab4.5_0000432g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 5.0e-70 270.8 222 60.4
Haze_04431 Corylus avellana HOM05D000329 ORTHO05D005330 7.2e-69 266.9 200 70.0
SEGI_29711 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 3.0e-67 261.5 258 53.5
ClCG06G009470 Citrullus lanatus HOM05D000329 ORTHO05D005330 5.1e-67 260.8 197 62.4
Haze_04430 Corylus avellana HOM05D000329 ORTHO05D005330 6.9e-64 250.4 178 65.2
Rhsim10G0071500 Rhododendron simsii HOM05D000329 ORTHO05D005330 1.5e-63 249.2 387 39.8
Hma1.2p1_3491F.1_g336380 Hydrangea macrophylla HOM05D000329 ORTHO05D005330 4.5e-63 247.7 227 58.1
QL93p0164_0019 Quercus lobata HOM05D000329 ORTHO05D005330 5.5e-61 240.7 172 65.1
HPP92_025621 Vanilla planifolia HOM05D000329 ORTHO05D005330 7.2e-61 240.4 248 52.0
HanXRQChr14g0434591 Helianthus annuus HOM05D000329 ORTHO05D005330 7.7e-55 220.3 178 60.1
Nitab4.5_0000432g0110 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.3e-54 219.5 153 71.9
BcaB04g19325 Brassica carinata HOM05D000329 ORTHO05D005330 1.9e-53 215.7 174 67.8
QL04p089247 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-51 209.5 179 59.2
QL05p031734 Quercus lobata HOM05D000176 ORTHO05D000106 1.4e-51 209.5 179 59.2
Sed0005472 Sechium edule HOM05D000329 ORTHO05D005330 3.0e-51 208.4 164 62.8
Nitab4.5_0025717g0010 Nicotiana tabacum HOM05D000329 ORTHO05D005330 4.5e-47 194.5 207 51.7
Rhsim05G0128300 Rhododendron simsii HOM05D000329 ORTHO05D005330 5.0e-46 191.0 463 33.0
PRCOL_00003022 Prasinoderma coloniale HOM05D000329 ORTHO05D005330 6.1e-44 184.1 1212 23.0
AT4G38092 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 1.8e-40 172.6 107 79.4
Cpa.g.sc162.42 Carica papaya HOM05D000329 ORTHO05D028196 3.3e-29 135.2 104 73.1
COL.COLO4_15480 Corchorus olitorius HOM05D000329 ORTHO05D005330 5.2e-27 127.9 136 55.9
ClCG06G009450 Citrullus lanatus HOM05D000329 ORTHO05D005330 3.4e-26 125.2 111 64.0
Haze_05933 Corylus avellana HOM05D000329 ORTHO05D005330 4.9e-25 121.3 83 73.5
SHI23197 Sapria himalayana HOM05D000329 ORTHO05D005330 9.2e-24 117.1 135 43.0
Solyc12g027560.1 Solanum lycopersicum HOM05D000329 ORTHO05D005330 9.2e-24 117.1 79 69.6
Rhsim10G0071600 Rhododendron simsii HOM05D000329 ORTHO05D005330 3.0e-22 112.1 82 65.9
Haze_04429 Corylus avellana HOM05D000329 ORTHO05D005330 5.8e-18 97.8 69 69.6
SHI23201 Sapria himalayana HOM05D000329 ORTHO05D005330 4.9e-17 94.7 83 56.6
SHI23198 Sapria himalayana HOM05D005377 ORTHO05D003034 1.6e-15 89.7 109 42.2
Sed0009230 Sechium edule HOM05D000329 ORTHO05D028196 3.0e-14 85.5 59 71.2
SHI23206 Sapria himalayana HOM05D000329 ORTHO05D005330 1.1e-13 83.6 75 60.0
SEGI_11781 Sequoiadendron giganteum HOM05D000329 ORTHO05D005330 1.5e-13 83.2 69 59.4
Cfa012903 Carpinus fangiana HOM05D000329 ORTHO05D005330 7.3e-13 80.9 80 53.8
Lsat_1_v5_gn_7_52080 Lactuca sativa HOM05D001785 ORTHO05D001150 2.1e-12 79.3 46 82.6
MapolyY_B0019 Marchantia polymorpha HOM05D003429 ORTHO05D003873 3.1e-11 75.5 480 23.5
Lsat_1_v5_gn_0_32021 Lactuca sativa HOM05D000147 ORTHO05D013131 9.9e-10 70.5 95 42.1
AT3G05035 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 2.2e-09 69.3 38 84.2
RhsimUnG0020700 Rhododendron simsii HOM05D003429 ORTHO05D003873 2.9e-09 68.9 745 21.5
Mapoly0017s0001 Marchantia polymorpha HOM05D003429 ORTHO05D003873 3.7e-09 68.6 484 21.9
A06p19390 Brassica napus HOM05D000329 ORTHO05D028196 6.4e-09 67.8 72 59.7
BraA01t03057Z Brassica rapa HOM05D000329 ORTHO05D028196 6.4e-09 67.8 72 59.7
Actinidia17975 Actinidia chinensis HOM05D003429 ORTHO05D003873 1.1e-08 67.0 595 21.5
Actinidia37867 Actinidia chinensis HOM05D003429 ORTHO05D003873 3.2e-08 65.5 752 21.0
Lsat_1_v5_gn_2_33241 Lactuca sativa HOM05D000329 ORTHO05D005330 3.2e-08 65.5 129 35.7
Lsat_1_v5_gn_8_51680 Lactuca sativa HOM05D000144 ORTHO05D005330 5.4e-08 64.7 74 48.6
Lsat_1_v5_gn_7_55340 Lactuca sativa HOM05D000144 ORTHO05D005330 2.1e-07 62.8 74 47.3
CSS0009838 Camellia sinensis var. sinensis HOM05D003429 ORTHO05D003873 3.5e-07 62.0 385 23.6
Lsat_1_v5_gn_7_52100 Lactuca sativa HOM05D000329 ORTHO05D005330 3.5e-07 62.0 71 42.3
Pp3c5_25430 Physcomitrium patens HOM05D003429 ORTHO05D003873 3.5e-07 62.0 486 21.4
Pp3c5_25610 Physcomitrium patens HOM05D003429 ORTHO05D003873 3.5e-07 62.0 486 21.4
Os03g0616700 Oryza sativa ssp. japonica HOM05D003429 ORTHO05D003873 7.8e-07 60.8 353 21.5
PSO339G2530 Papaver somniferum HOM05D003429 ORTHO05D003873 1.3e-06 60.1 555 21.3
Aqoxy5G00851 Aquilegia oxysepala HOM05D003429 ORTHO05D003873 2.3e-06 59.3 353 22.1
CDE07G0955 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 5.1e-06 58.2 355 23.7
SHI23202 Sapria himalayana HOM05D000329 ORTHO05D005330 8.6e-06 57.4 76 46.1


User provided reference genes

Program Settings