Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 0.0e+00 1084.7 541 100.0
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 2.9e-283 978.0 541 88.9
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 1.0e-280 969.5 542 88.4
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 1.3e-278 962.6 542 88.4
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 4.5e-276 954.1 542 88.0
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 5.9e-276 953.7 544 87.3
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 1.9e-274 948.7 541 88.0
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 1.4e-272 942.6 541 87.2
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 4.0e-272 941.0 543 86.7
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 4.0e-272 941.0 543 86.7
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 4.4e-271 937.6 543 86.4
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 3.1e-269 931.4 542 85.6
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 2.7e-268 928.3 541 84.7
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 3.5e-268 927.9 541 85.0
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 7.7e-268 926.8 542 86.7
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 3.8e-267 924.5 541 85.8
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 1.2e-265 919.5 542 86.3
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 9.8e-255 883.2 545 83.9
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 3.7e-254 881.3 539 83.9
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 2.8e-249 865.1 547 79.7
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 1.6e-220 769.6 547 70.7
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 3.9e-179 632.1 563 58.1
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 3.9e-179 632.1 568 57.7
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 2.8e-177 625.9 565 57.9
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 2.8e-177 625.9 565 57.9
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 8.2e-177 624.4 565 57.2
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 1.4e-176 623.6 565 58.1
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 3.1e-176 622.5 562 56.6
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 4.1e-176 622.1 566 57.1
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 9.1e-176 620.9 558 59.0
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 9.1e-176 620.9 566 58.0
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 5.9e-175 618.2 565 57.3
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 5.9e-175 618.2 561 58.1
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 5.9e-175 618.2 563 57.4
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 2.2e-174 616.3 563 56.1
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 3.0e-171 605.9 610 54.6
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 3.3e-170 602.4 568 56.0
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 7.4e-170 601.3 566 56.2
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 9.7e-170 600.9 558 55.4
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 1.4e-168 597.0 561 56.0
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.4e-168 596.3 558 56.3
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 4.1e-168 595.5 563 56.3
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.7e-166 590.1 563 54.0
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 6.5e-166 588.2 566 54.9
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 6.5e-166 588.2 562 53.9
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 1.4e-165 587.0 552 55.8
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 4.2e-165 585.5 559 53.5
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 4.2e-165 585.5 558 55.2
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 5.5e-165 585.1 553 55.2
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.5e-165 585.1 563 54.0
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 7.2e-165 584.7 564 54.8
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 7.2e-165 584.7 566 55.8
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.1e-164 583.2 559 53.5
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 3.6e-164 582.4 555 54.2
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 1.0e-163 580.9 566 53.7
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 1.4e-163 580.5 550 54.9
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 1.4e-163 580.5 565 53.8
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 2.3e-163 579.7 564 55.0
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.7e-163 578.2 564 53.4
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 1.1e-162 577.4 551 54.3
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 2.0e-162 576.6 559 54.9
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 2.8e-161 572.8 571 53.8
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 4.1e-160 568.9 557 54.0
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 7.0e-160 568.2 559 52.8
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 9.1e-160 567.8 550 54.2
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 1.6e-159 567.0 479 59.9
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 7.7e-159 564.7 558 55.7
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 1.0e-158 564.3 596 50.0
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 1.0e-158 564.3 558 55.6
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 2.2e-158 563.1 570 51.9
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 2.2e-158 563.1 569 54.0
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 2.9e-158 562.8 555 53.2
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 8.5e-158 561.2 564 53.7
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 3.2e-157 559.3 562 51.8
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 4.2e-157 558.9 563 55.6
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 4.2e-157 558.9 563 55.2
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 7.2e-157 558.1 564 52.5
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 8.0e-156 554.7 548 55.5
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.8e-155 553.5 564 53.5
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 5.2e-155 552.0 558 53.6
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 6.7e-155 551.6 563 52.2
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 8.8e-155 551.2 563 52.4
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 2.0e-154 550.1 485 59.0
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 3.3e-154 549.3 566 53.0
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 1.7e-153 547.0 569 51.0
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.1e-152 544.3 567 52.0
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.2e-148 530.8 568 51.2
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 3.6e-148 529.3 566 51.1
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 3.0e-147 526.2 565 51.2
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 2.0e-146 523.5 559 50.8
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 1.3e-145 520.8 492 56.9
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 6.3e-145 518.5 425 61.2
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 4.1e-144 515.8 551 51.5
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 5.9e-143 511.9 499 54.5
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 1.2e-138 497.7 575 48.5
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 8.3e-137 491.5 629 44.8
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.5e-135 485.7 545 48.8
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.3e-134 484.2 556 48.7
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 3.3e-133 479.6 532 49.4
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 1.6e-132 477.2 502 52.0
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 5.7e-130 468.8 555 47.4
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 5.9e-127 458.8 562 47.3
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.9e-125 453.8 563 47.6
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 1.4e-123 447.6 530 47.0
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.4e-114 416.0 564 43.3
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 1.7e-113 414.1 393 53.4
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 1.4e-112 411.0 551 47.2
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 1.9e-112 410.6 822 35.8
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 3.2e-112 409.8 412 52.7
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 1.9e-109 400.6 386 58.5
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.2e-106 391.3 554 43.0
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 6.9e-91 339.0 436 44.7
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 2.9e-89 333.6 399 45.6
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 9.6e-85 318.5 603 37.3
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 3.8e-81 306.6 427 42.6
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 7.4e-77 292.4 429 41.0
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 5.8e-74 282.7 358 45.3
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.4e-59 234.2 377 38.5
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 3.9e-54 216.9 268 45.5
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.1e-53 215.3 254 45.7
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.0e-53 214.5 228 49.1
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.4e-48 198.4 212 48.6
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 4.2e-40 170.2 167 56.3
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 6.3e-36 156.4 183 42.6
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 5.3e-35 153.3 332 34.6
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 5.9e-34 149.8 430 28.6
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 1.5e-32 145.2 152 49.3
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 2.2e-20 104.8 60 85.0
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 4.1e-19 100.5 167 41.3
C05p29450 Brassica napus HOM05D005077 ORTHO05D018175 1.0e-17 95.9 66 81.8
BolC5t31675H Brassica oleracea HOM05D005077 ORTHO05D018175 1.0e-17 95.9 66 81.8
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 3.8e-17 94.0 192 30.2
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 3.8e-17 94.0 101 46.5
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 1.0e-14 85.9 62 61.3
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 3.7e-12 77.4 49 79.6
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 3.7e-12 77.4 78 51.3
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 6.4e-12 76.6 346 24.9
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 4.1e-11 73.9 93 49.5
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.4e-06 58.9 64 51.6
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 4.0e-06 57.4 64 51.6


User provided reference genes

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