Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 9.8e-139 496.9 268 100.0
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 4.1e-105 385.2 273 79.9
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 5.3e-92 341.7 276 75.0
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 4.4e-91 338.6 276 75.4
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 4.4e-91 338.6 276 75.0
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.3e-90 337.0 279 72.4
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 1.3e-90 337.0 276 75.4
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 1.3e-90 337.0 276 75.4
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 7.1e-89 331.3 281 71.5
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 1.2e-88 330.5 281 72.2
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 1.0e-87 327.4 277 74.0
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 8.7e-87 324.3 280 70.4
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 4.0e-76 288.9 290 63.1
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 1.2e-30 137.9 286 42.3
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 4.8e-29 132.5 238 42.0
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 4.1e-28 129.4 247 40.9
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 4.1e-28 129.4 247 40.9
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 5.3e-28 129.0 266 39.8
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 7.0e-28 128.6 234 41.5
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 1.2e-27 127.9 192 45.3
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 3.5e-27 126.3 187 47.6
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 1.5e-25 120.9 181 45.3
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 4.2e-25 119.4 238 41.6
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 4.2e-25 119.4 245 35.5
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 5.5e-25 119.0 177 46.9
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 1.0e-23 114.8 251 36.7
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 4.0e-23 112.8 260 37.7
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 6.8e-23 112.1 180 45.0
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 3.4e-22 109.8 265 38.9
C05p62860 Brassica napus HOM05D004244 ORTHO05D004964 3.4e-22 109.8 87 69.0
BolC5t34941H Brassica oleracea HOM05D004244 ORTHO05D004964 3.4e-22 109.8 87 69.0
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.4e-22 109.4 233 35.6
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.2e-21 107.1 195 42.1
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 1.4e-20 104.4 192 40.6
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 1.8e-20 104.0 198 37.4
A05p43120 Brassica napus HOM05D004244 ORTHO05D004964 3.1e-20 103.2 87 66.7
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 5.4e-20 102.4 178 42.1
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 1.2e-19 101.3 236 37.3
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 1.2e-19 101.3 181 39.2
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 1.2e-19 101.3 198 37.4
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 2.7e-19 100.1 183 39.9
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 5.9e-19 99.0 235 36.2
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 1.7e-18 97.4 259 32.4
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 2.3e-18 97.1 192 38.5
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.9e-18 96.7 188 37.2
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.9e-18 96.7 188 39.4
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 3.8e-18 96.3 174 39.7
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 5.0e-18 95.9 186 38.2
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 6.6e-18 95.5 179 41.9
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 6.6e-18 95.5 192 38.5
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 1.1e-17 94.7 179 41.9
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 1.5e-17 94.4 274 32.1
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 3.3e-17 93.2 170 41.8
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 4.2e-17 92.8 177 38.4
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 4.2e-17 92.8 196 35.7
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 4.2e-17 92.8 184 38.0
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 7.2e-17 92.0 180 38.3
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 7.2e-17 92.0 179 41.3
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 9.5e-17 91.7 184 35.3
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 1.2e-16 91.3 175 38.3
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.6e-16 90.9 197 38.1
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 2.1e-16 90.5 195 33.3
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 3.6e-16 89.7 173 37.0
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 4.7e-16 89.4 210 32.9
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 4.7e-16 89.4 178 37.6
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 6.1e-16 89.0 187 36.4
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 6.1e-16 89.0 188 37.8
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 6.1e-16 89.0 179 38.5
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 8.0e-16 88.6 176 34.7
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 8.0e-16 88.6 235 34.0
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 1.8e-15 87.4 185 33.0
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 1.8e-15 87.4 180 39.4
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 2.3e-15 87.0 176 34.7
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 3.0e-15 86.7 243 32.9
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 6.8e-15 85.5 183 32.8
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 1.2e-14 84.7 190 36.3
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 1.2e-14 84.7 181 36.5
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 2.0e-14 84.0 287 32.1
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 2.6e-14 83.6 193 34.7
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 3.4e-14 83.2 202 36.6
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 5.7e-14 82.4 190 33.7
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 7.5e-14 82.0 168 40.5
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.3e-13 81.3 187 33.2
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 1.3e-13 81.3 186 33.3
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.3e-13 81.3 184 34.2
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 1.7e-13 80.9 188 31.4
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 1.7e-13 80.9 174 36.2
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 1.7e-13 80.9 180 35.6
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 1.7e-13 80.9 182 32.4
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 1.7e-13 80.9 244 33.2
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 2.2e-13 80.5 180 32.2
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 2.2e-13 80.5 172 33.7
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 2.8e-13 80.1 182 33.0
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 3.7e-13 79.7 249 31.3
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 6.3e-13 79.0 185 34.6
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.3e-13 78.6 187 32.6
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.4e-12 77.8 189 32.3
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 1.4e-12 77.8 189 32.3
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 1.4e-12 77.8 261 34.9
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 1.8e-12 77.4 204 30.9
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 1.8e-12 77.4 186 34.4
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 2.4e-12 77.0 192 34.9
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 2.4e-12 77.0 200 35.0
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.1e-12 76.3 181 32.6
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 5.4e-12 75.9 176 35.2
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 7.0e-12 75.5 179 34.6
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 7.0e-12 75.5 176 34.1
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 7.0e-12 75.5 178 33.7
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 1.2e-11 74.7 177 33.3
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.0e-11 73.9 175 33.1
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 2.7e-11 73.6 177 33.9
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.3e-10 71.2 161 39.1
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 5.0e-10 69.3 165 36.4
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 6.6e-10 68.9 181 29.8
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 6.6e-10 68.9 181 33.7
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 6.6e-10 68.9 171 33.3
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 8.6e-10 68.6 180 34.4
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 1.5e-09 67.8 132 37.1
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 3.3e-09 66.6 148 35.8
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 3.3e-09 66.6 197 31.0
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 4.3e-09 66.2 148 35.8
Migut.N00322 Erythranthe guttata HOM05D004244 ORTHO05D004964 5.6e-09 65.9 205 27.8
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 1.2e-08 64.7 182 30.8
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 1.6e-08 64.3 181 32.6
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 2.8e-08 63.5 146 36.3
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 6.1e-08 62.4 179 33.5
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 1.0e-07 61.6 153 34.6
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 1.4e-07 61.2 180 30.6
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 2.3e-07 60.5 199 29.1
Ah.06g187950 Amaranthus hybridus HOM05D004244 ORTHO05D004964 3.1e-07 60.1 141 33.3
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.5e-06 57.8 187 28.3
ECA238G3737 Erigeron canadensis HOM05D004244 ORTHO05D004964 7.5e-06 55.5 174 26.4


User provided reference genes

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