Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g03130 Schrenkiella parvula HOM05D006063 ORTHO05D000023 0.0e+00 1362.1 716 100.0
Thhalv10020148m.g Eutrema salsugineum HOM05D006063 ORTHO05D000023 2.6e-287 991.9 637 81.2
AT3G04160 Arabidopsis thaliana HOM05D006063 ORTHO05D000023 3.3e-282 974.9 722 72.4
AL3G14090 Arabidopsis lyrata HOM05D006063 ORTHO05D000023 1.7e-278 962.6 716 74.3
CARHR078300 Cardamine hirsuta HOM05D006063 ORTHO05D000023 2.5e-274 948.7 726 72.2
Carub.0003s0342 Capsella rubella HOM05D006063 ORTHO05D000023 5.6e-258 894.4 715 69.5
BcaB04g19349 Brassica carinata HOM05D006063 ORTHO05D000023 7.1e-253 877.5 705 71.2
Aa31LG5G14700 Aethionema arabicum HOM05D006063 ORTHO05D000023 6.2e-241 837.8 725 64.7
C03p40730 Brassica napus HOM05D006063 ORTHO05D000023 6.2e-233 811.2 708 66.2
A03p33520 Brassica napus HOM05D006063 ORTHO05D000023 2.6e-223 779.2 711 64.4
BraA03t12527Z Brassica rapa HOM05D006063 ORTHO05D000023 3.8e-222 775.4 709 63.9
BcaC01g04385 Brassica carinata HOM05D006063 ORTHO05D000023 1.9e-213 746.5 712 62.8
BolC3t16339H Brassica oleracea HOM05D006063 ORTHO05D000023 8.2e-209 731.1 714 63.7
THA.LOC104820746 Tarenaya hassleriana HOM05D006063 ORTHO05D000023 1.1e-202 710.7 716 58.9
Cpa.g.sc51.61 Carica papaya HOM05D006063 ORTHO05D000023 8.1e-140 501.9 567 50.1
Thecc.05G261400 Theobroma cacao HOM05D006063 ORTHO05D000023 2.8e-124 450.3 724 42.8
CANSAT54G1152 Cannabis sativa HOM05D006063 ORTHO05D000023 4.0e-123 446.4 739 41.8
Gorai.013G118800 Gossypium raimondii HOM05D006063 ORTHO05D000023 1.3e-121 441.4 756 41.7
Gohir.D13G106000 Gossypium hirsutum HOM05D006063 ORTHO05D000023 1.7e-121 441.0 756 41.8
Manes.09G145100 Manihot esculenta HOM05D006063 ORTHO05D000023 4.9e-121 439.5 699 42.2
Sabra19G0039200 Salix brachista HOM05D006063 ORTHO05D000023 4.2e-120 436.4 699 41.1
TWI34G0066 Tripterygium wilfordii HOM05D006063 ORTHO05D000023 2.7e-119 433.7 705 42.3
Potri.019G029400 Populus trichocarpa HOM05D006063 ORTHO05D000023 3.5e-119 433.3 708 40.5
Sabra19G0036100 Salix brachista HOM05D006063 ORTHO05D000023 3.9e-118 429.9 693 40.4
FAN09G4822 Fragaria x ananassa HOM05D006063 ORTHO05D000023 5.7e-117 426.0 748 40.4
Prupe.6G355400 Prunus persica HOM05D006063 ORTHO05D000023 9.6e-117 425.2 740 40.0
Ciclev10019009m.g Citrus clementina HOM05D006063 ORTHO05D000023 1.6e-116 424.5 725 42.1
FvH4_6g01260 Fragaria vesca HOM05D006063 ORTHO05D000023 2.1e-116 424.1 748 40.2
TAR362G1155 Trochodendron aralioides HOM05D006063 ORTHO05D000023 1.8e-115 421.0 782 40.0
MELO3C010119.2 Cucumis melo HOM05D006063 ORTHO05D000023 3.4e-114 416.8 664 42.6
FAN02G3689 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.4e-114 416.8 740 39.9
Aqoxy2G04022 Aquilegia oxysepala HOM05D006063 ORTHO05D000023 5.9e-114 416.0 708 40.3
FAN05G0856 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.3e-113 414.8 738 39.8
CsaV3_1G044890 Cucumis sativus L. HOM05D006063 ORTHO05D000023 3.8e-113 413.3 648 44.3
MD04G1235500 Malus domestica HOM05D006063 ORTHO05D000023 3.8e-113 413.3 761 38.2
Sed0026121 Sechium edule HOM05D006063 ORTHO05D000023 3.2e-112 410.2 632 44.1
A05p43190 Brassica napus HOM05D006063 ORTHO05D000023 5.5e-112 409.5 372 65.6
ClCG03G011330 Citrullus lanatus HOM05D006063 ORTHO05D000023 1.0e-110 405.2 709 40.8
Eucgr.H04160 Eucalyptus grandis HOM05D006063 ORTHO05D000023 9.0e-107 392.1 579 43.0
Rhsim09G0137100 Rhododendron simsii HOM05D006063 ORTHO05D000023 3.4e-106 390.2 742 39.5
Hund07147 Selenicereus undatus HOM05D006063 ORTHO05D000023 3.8e-105 386.7 668 39.2
CSS0004581 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 2.5e-104 384.0 754 36.7
vmacro10365 Vaccinium macrocarpon HOM05D006063 ORTHO05D000023 4.2e-104 383.3 691 40.1
EL10Ac4g09796 Beta vulgaris HOM05D006063 ORTHO05D000023 1.2e-103 381.7 753 37.1
Actinidia34754 Actinidia chinensis HOM05D006063 ORTHO05D000023 2.2e-100 370.9 683 38.4
PSO063G1700 Papaver somniferum HOM05D006063 ORTHO05D000023 6.9e-99 365.9 720 38.3
ATR0618G015 Amborella trichopoda HOM05D006063 ORTHO05D000023 4.2e-96 356.7 732 36.9
Lsat_1_v5_gn_9_46040 Lactuca sativa HOM05D006063 ORTHO05D000023 5.5e-96 356.3 719 38.4
Sc16g0010060 Simmondsia chinensis HOM05D006063 ORTHO05D000023 7.2e-96 355.9 701 37.2
Migut.F02045 Erythranthe guttata HOM05D006063 ORTHO05D000023 1.2e-95 355.1 617 40.5
AUR62005299 Chenopodium quinoa HOM05D006063 ORTHO05D000765 2.7e-95 354.0 501 42.7
MSTRG.9222 Avicennia marina HOM05D006063 ORTHO05D000023 3.9e-94 350.1 642 40.2
PGSC0003DMG400015112 Solanum tuberosum HOM05D006063 ORTHO05D000023 1.5e-93 348.2 707 37.3
CAN.G4.18 Capsicum annuum HOM05D006063 ORTHO05D000023 2.0e-93 347.8 689 37.7
Phvul.L001648 Phaseolus vulgaris HOM05D006063 ORTHO05D000023 4.4e-93 346.7 682 37.5
PSO017G2613 Papaver somniferum HOM05D006063 ORTHO05D000023 3.7e-92 343.6 702 37.2
Nitab4.5_0000504g0070 Nicotiana tabacum HOM05D006063 ORTHO05D000023 6.3e-92 342.8 698 37.0
Glyma.10G169000 Glycine max HOM05D006063 ORTHO05D000023 7.0e-91 339.3 698 37.8
Solyc04g050760.4 Solanum lycopersicum HOM05D006063 ORTHO05D000023 2.6e-90 337.4 690 37.1
Lalb_Chr21g0311331 Lupinus albus HOM05D006063 ORTHO05D000023 5.9e-90 336.3 673 37.7
VMungo0720G1344 Vigna mungo HOM05D006063 ORTHO05D000023 5.9e-90 336.3 658 37.7
Sopen04g021710 Solanum pennellii HOM05D006063 ORTHO05D000023 2.2e-89 334.3 687 37.7
Cc09_g03150 Coffea canephora HOM05D006063 ORTHO05D000023 2.9e-89 334.0 636 39.0
Nitab4.5_0004201g0010 Nicotiana tabacum HOM05D006063 ORTHO05D000023 2.5e-88 330.9 701 37.5
Peaxi162Scf00071g01413 Petunia axillaris HOM05D006063 ORTHO05D000023 2.5e-88 330.9 566 40.3
Oeu010183.1 Olea europaea HOM05D006063 ORTHO05D000023 1.2e-87 328.6 548 40.1
SHI14775 Sapria himalayana HOM05D006063 ORTHO05D000023 2.1e-87 327.8 487 40.0
SalBow1G3325 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.4e-86 325.1 625 38.7
arahy.Tifrunner.gnm1.ann1.2N7XA4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.8e-86 324.7 525 40.2
arahy.Tifrunner.gnm1.ann1.JVQ2Z4 Arachis hypogaea HOM05D006063 ORTHO05D000023 1.8e-86 324.7 525 40.0
CiPaw.07G075500 Carya illinoinensis HOM05D006063 ORTHO05D000023 5.2e-86 323.2 499 42.9
SalBow1G1068 Salvia bowleyana HOM05D006063 ORTHO05D000023 1.5e-85 321.6 673 35.4
Lj3g0014127 Lotus japonicus HOM05D006063 ORTHO05D000023 3.3e-85 320.5 663 35.3
HanXRQChr15g0491401 Helianthus annuus HOM05D006063 ORTHO05D000023 1.8e-83 314.7 668 36.5
MBI07_g04744_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 1.8e-83 314.7 661 36.3
Lj2A50T27 Lonicera japonica HOM05D006063 ORTHO05D000023 4.1e-83 313.5 382 47.4
SGA_v2.0_scaffold62G21476 Striga asiatica HOM05D006063 ORTHO05D000023 2.1e-79 301.2 620 37.6
FAN05G5389 Fragaria x ananassa HOM05D006063 ORTHO05D000023 3.0e-78 297.4 528 39.6
Ca_09979_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 2.0e-77 294.7 674 32.9
Ca_09995_v3 Cicer arietinum L. HOM05D006063 ORTHO05D000023 4.4e-77 293.5 667 33.0
QL07p027196 Quercus lobata HOM05D006063 ORTHO05D000023 5.4e-75 286.6 703 32.6
Medtr1g079470 Medicago truncatula HOM05D006063 ORTHO05D000023 2.0e-74 284.6 633 34.9
Gohir.A13G102800 Gossypium hirsutum HOM05D006063 ORTHO05D000023 2.7e-74 284.3 506 39.5
Dinv03784 Davidia involucrata HOM05D006063 ORTHO05D000023 5.0e-73 280.0 452 41.2
A05p43200 Brassica napus HOM05D000005 ORTHO05D000449 2.8e-71 274.2 249 66.3
MBI18_g19284_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 3.0e-70 270.8 408 42.4
Hma1.2p1_0153F.1_g067880 Hydrangea macrophylla HOM05D006063 ORTHO05D000023 8.8e-70 269.2 431 39.7
RcHm_v2.0_Chr3g0448821 Rosa chinensis HOM05D006063 ORTHO05D000023 1.8e-62 245.0 286 51.4
CSS0046279 Camellia sinensis var. sinensis HOM05D006063 ORTHO05D000023 4.9e-60 236.9 525 35.6
Haze_04487 Corylus avellana HOM05D006063 ORTHO05D000023 4.9e-60 236.9 678 32.3
Atru.chr2.1232 Acer truncatum HOM05D006063 ORTHO05D000023 6.4e-60 236.5 368 39.7
C05p62940 Brassica napus HOM05D000005 ORTHO05D000449 4.1e-59 233.8 166 74.7
SMO351G0027 Selaginella moellendorffii HOM05D006063 ORTHO05D000023 5.0e-57 226.9 599 31.4
BraA05t23062Z Brassica rapa HOM05D006063 ORTHO05D000023 4.9e-52 210.3 222 59.0
Zm00001eb086400 Zea mays HOM05D006063 ORTHO05D000023 2.0e-50 204.9 433 34.4
AagrBONN_evm.TU.Sc2ySwM_362.520 Anthoceros agrestis HOM05D006063 ORTHO05D000023 1.5e-48 198.7 580 29.5
Mapoly0001s0430 Marchantia polymorpha HOM05D006063 ORTHO05D000023 1.5e-48 198.7 733 28.2
TPR.G10281 Trifolium pratense HOM05D006063 ORTHO05D000023 2.1e-47 194.9 374 36.6
Os04g0349401 Oryza sativa ssp. japonica HOM05D006063 ORTHO05D000023 5.8e-45 186.8 413 34.9
ECA232G4499 Erigeron canadensis HOM05D006063 ORTHO05D000023 1.3e-44 185.7 418 35.2
C05p62930 Brassica napus HOM05D000005 ORTHO05D000294 3.7e-44 184.1 116 76.7
COL.COLO4_20542 Corchorus olitorius HOM05D006063 ORTHO05D000023 3.5e-42 177.6 362 38.1
GSVIVG01026370001 Vitis vinifera HOM05D006063 ORTHO05D000023 8.6e-41 172.9 138 65.2
FvH4_5g38930 Fragaria vesca HOM05D006063 ORTHO05D000023 6.2e-39 166.8 267 44.2
Psat6g141160 Pisum sativum HOM05D006063 ORTHO05D000023 5.2e-38 163.7 394 35.3
HPP92_006232 Vanilla planifolia HOM05D006063 ORTHO05D000023 6.8e-38 163.3 239 41.0
Pp3c17_4760 Physcomitrium patens HOM05D006063 ORTHO05D000023 1.2e-37 162.5 443 30.0
CDE05G2869 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 2.0e-37 161.8 220 42.3
MBI18_g46979_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 2.6e-37 161.4 419 34.4
Atru.chr2.1231 Acer truncatum HOM05D006063 ORTHO05D000023 1.0e-33 149.4 100 75.0
HPP92_006233 Vanilla planifolia HOM05D006063 ORTHO05D000023 1.1e-32 146.0 311 38.3
CDE05G3203 Ceratophyllum demersum HOM05D006063 ORTHO05D000023 7.6e-29 133.3 260 40.0
RcHm_v2.0_Chr3g0448831 Rosa chinensis HOM05D006063 ORTHO05D000023 1.9e-24 118.6 156 44.9
SEGI_40887 Sequoiadendron giganteum HOM05D006063 ORTHO05D000023 1.9e-24 118.6 206 44.7
CsaV3_1G044530 Cucumis sativus L. HOM05D006063 ORTHO05D000023 1.3e-23 115.9 111 61.3
DCAR_005531 Daucus carota HOM05D006063 ORTHO05D000023 1.1e-22 112.8 297 30.0
Cpa.g.sc51.65 Carica papaya HOM05D006063 ORTHO05D000023 5.4e-19 100.5 303 31.4
BcaC05g30213 Brassica carinata HOM05D006063 ORTHO05D000023 2.8e-15 88.2 198 41.4
Cpa.g.sc51.64 Carica papaya HOM05D006063 ORTHO05D000023 8.1e-15 86.7 109 45.9
MBI18_g46978_MAGBIO Magnolia biondii HOM05D006063 ORTHO05D000023 7.6e-13 80.1 100 46.0
Dinv03782 Davidia involucrata HOM05D006063 ORTHO05D045148 1.6e-07 62.4 40 77.5
FAN08G2149 Fragaria x ananassa HOM05D006063 ORTHO05D000023 1.6e-07 62.4 146 34.9
BolC5t34949H Brassica oleracea HOM05D006063 ORTHO05D000023 2.8e-07 61.6 58 55.2
C02p18060 Brassica napus HOM05D036047 ORTHO05D027912 5.3e-06 57.4 36 83.3
C03p43850 Brassica napus HOM05D036047 ORTHO05D027912 5.3e-06 57.4 36 83.3


User provided reference genes

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