Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g02110 Schrenkiella parvula HOM05D006678 ORTHO05D008388 2.9e-60 235.0 112 100.0
Thhalv10021803m.g Eutrema salsugineum HOM05D006678 ORTHO05D008388 3.5e-58 228.0 112 98.2
AL3G12580 Arabidopsis lyrata HOM05D006678 ORTHO05D008388 1.3e-57 226.1 112 97.3
Aa31LG5G13550 Aethionema arabicum HOM05D006678 ORTHO05D008388 1.8e-57 225.7 112 97.3
Carub.0003s0222 Capsella rubella HOM05D006678 ORTHO05D008388 3.9e-57 224.6 112 96.4
BcaB04g21385 Brassica carinata HOM05D006678 ORTHO05D008388 6.7e-57 223.8 112 92.9
CARHR077080 Cardamine hirsuta HOM05D006678 ORTHO05D008388 1.1e-56 223.0 112 95.5
AT3G03070 Arabidopsis thaliana HOM05D006678 ORTHO05D008388 1.5e-56 222.6 112 95.5
BolC5t35043H Brassica oleracea HOM05D006678 ORTHO05D008388 1.3e-55 219.5 113 93.8
C05p63740 Brassica napus HOM05D006678 ORTHO05D008388 1.8e-54 215.7 113 92.0
A05p44110 Brassica napus HOM05D006678 ORTHO05D008388 1.2e-53 213.0 113 91.2
BraSC90t46700Z Brassica rapa HOM05D006678 ORTHO05D008388 1.2e-53 213.0 113 91.2
BolC1t05850H Brassica oleracea HOM05D006678 ORTHO05D008388 1.7e-52 209.1 112 87.5
BNapus_Darmor_BZH_scaffold_129p00040 Brassica napus HOM05D006678 ORTHO05D008388 4.9e-52 207.6 112 86.6
BraA01t04595Z Brassica rapa HOM05D006678 ORTHO05D008388 8.4e-52 206.8 112 86.6
THA.LOC104827215 Tarenaya hassleriana HOM05D006678 ORTHO05D008388 5.0e-44 181.0 112 77.7
THA.LOC104802920 Tarenaya hassleriana HOM05D006678 ORTHO05D008388 1.9e-43 179.1 112 77.7
Atru.chr12.1964 Acer truncatum HOM05D006678 ORTHO05D008388 2.7e-42 175.3 112 75.0
DCAR_009010 Daucus carota HOM05D006678 ORTHO05D008388 3.0e-41 171.8 113 74.3
Ciclev10023015m.g Citrus clementina HOM05D006678 ORTHO05D008388 8.7e-41 170.2 112 73.2
Manes.09G127100 Manihot esculenta HOM05D006678 ORTHO05D008388 1.1e-40 169.9 112 75.0
MD01G1236000 Malus domestica HOM05D006678 ORTHO05D008388 1.5e-40 169.5 113 74.3
Gohir.D13G161000 Gossypium hirsutum HOM05D006678 ORTHO05D008388 5.7e-40 167.5 110 71.8
Gorai.013G181600 Gossypium raimondii HOM05D006678 ORTHO05D008388 5.7e-40 167.5 110 71.8
Nitab4.5_0000021g0500 Nicotiana tabacum HOM05D006678 ORTHO05D008388 7.4e-40 167.2 113 71.7
CiPaw.06G032600 Carya illinoinensis HOM05D006678 ORTHO05D008388 1.3e-39 166.4 112 71.4
Sed0006085 Sechium edule HOM05D006678 ORTHO05D008388 1.3e-39 166.4 113 73.5
Thecc.05G213400 Theobroma cacao HOM05D006678 ORTHO05D008388 1.3e-39 166.4 110 71.8
ClCG02G007680 Citrullus lanatus HOM05D006678 ORTHO05D008388 2.2e-39 165.6 113 69.9
Duzib106G0454 Durio zibethinus HOM05D006678 ORTHO05D008388 2.2e-39 165.6 110 71.8
Nitab4.5_0011186g0030 Nicotiana tabacum HOM05D006678 ORTHO05D008388 2.2e-39 165.6 113 71.7
Oeu031704.1 Olea europaea HOM05D006678 ORTHO05D008388 2.2e-39 165.6 114 71.9
Prupe.2G326100 Prunus persica HOM05D006678 ORTHO05D008388 2.2e-39 165.6 112 72.3
Duzib177G0619 Durio zibethinus HOM05D006678 ORTHO05D008388 3.7e-39 164.9 110 70.9
FAN10G1380 Fragaria x ananassa HOM05D006678 ORTHO05D008388 3.7e-39 164.9 113 69.9
MELO3C024729.2 Cucumis melo HOM05D006678 ORTHO05D008388 4.8e-39 164.5 113 69.9
Gohir.A13G156100 Gossypium hirsutum HOM05D006678 ORTHO05D008388 4.8e-39 164.5 110 70.0
FAN03G1679 Fragaria x ananassa HOM05D006678 ORTHO05D008388 6.3e-39 164.1 113 69.0
Phvul.011G020300 Phaseolus vulgaris HOM05D006678 ORTHO05D008388 6.3e-39 164.1 113 70.8
Lsat_1_v5_gn_9_47480 Lactuca sativa HOM05D006678 ORTHO05D008388 8.2e-39 163.7 112 71.4
PGR042G1336 Punica granatum HOM05D006678 ORTHO05D008388 8.2e-39 163.7 115 69.6
QL09p024031 Quercus lobata HOM05D006678 ORTHO05D008388 8.2e-39 163.7 111 70.3
GSVIVG01024408001 Vitis vinifera HOM05D006678 ORTHO05D008388 8.2e-39 163.7 112 70.5
HanXRQChr03g0088421 Helianthus annuus HOM05D006678 ORTHO05D008388 1.1e-38 163.3 113 72.6
Lalb_Chr01g0000921 Lupinus albus HOM05D006678 ORTHO05D008388 1.1e-38 163.3 112 69.6
Ca_04918_v3 Cicer arietinum L. HOM05D006678 ORTHO05D008388 1.4e-38 162.9 115 69.6
TAR629G1392 Trochodendron aralioides HOM05D006678 ORTHO05D008388 1.4e-38 162.9 113 70.8
FvH4_7g33980 Fragaria vesca HOM05D006678 ORTHO05D008388 1.8e-38 162.5 113 69.9
VMungo1127G1968 Vigna mungo HOM05D006678 ORTHO05D008388 1.8e-38 162.5 113 72.6
Actinidia18705 Actinidia chinensis HOM05D006678 ORTHO05D008388 2.4e-38 162.2 111 68.5
Lalb_Chr03g0024411 Lupinus albus HOM05D006678 ORTHO05D008388 3.1e-38 161.8 114 67.5
Lj3g0002487 Lotus japonicus HOM05D006678 ORTHO05D008388 4.1e-38 161.4 121 66.1
Peaxi162Scf00133g00723 Petunia axillaris HOM05D006678 ORTHO05D008388 5.3e-38 161.0 113 69.9
Actinidia34306 Actinidia chinensis HOM05D006678 ORTHO05D008388 6.9e-38 160.6 111 67.6
COL.COLO4_11805 Corchorus olitorius HOM05D006678 ORTHO05D008388 6.9e-38 160.6 110 69.1
CsaV3_2G036030 Cucumis sativus L. HOM05D006678 ORTHO05D008388 6.9e-38 160.6 113 69.0
Dinv17257 Davidia involucrata HOM05D006678 ORTHO05D008388 1.2e-37 159.8 113 66.4
FAN01G1466 Fragaria x ananassa HOM05D006678 ORTHO05D008388 2.0e-37 159.1 113 67.3
Nn1g01909 Nelumbo nucifera HOM05D006678 ORTHO05D008388 2.0e-37 159.1 114 68.4
Psat7g171800 Pisum sativum HOM05D006678 ORTHO05D008388 2.0e-37 159.1 115 68.7
MSTRG.26930 Avicennia marina HOM05D006678 ORTHO05D008388 2.6e-37 158.7 112 67.9
Glyma.11G091800 Glycine max HOM05D006678 ORTHO05D008388 2.6e-37 158.7 112 68.8
Glyma.12G017800 Glycine max HOM05D006678 ORTHO05D008388 2.6e-37 158.7 112 70.5
RcHm_v2.0_Chr1g0384211 Rosa chinensis HOM05D006678 ORTHO05D008388 2.6e-37 158.7 114 67.5
PSO782G5154 Papaver somniferum HOM05D006678 ORTHO05D008388 3.4e-37 158.3 114 69.3
Potri.013G082100 Populus trichocarpa HOM05D006678 ORTHO05D008388 3.4e-37 158.3 112 67.9
Aqoxy3G02158 Aquilegia oxysepala HOM05D006678 ORTHO05D008388 4.5e-37 157.9 93 79.6
arahy.Tifrunner.gnm1.ann1.Z69A25 Arachis hypogaea HOM05D006678 ORTHO05D008388 5.9e-37 157.5 115 67.8
Dinv29159 Davidia involucrata HOM05D006678 ORTHO05D008388 5.9e-37 157.5 113 67.3
Medtr4g077807 Medicago truncatula HOM05D006678 ORTHO05D008388 7.7e-37 157.1 115 68.7
PSO063G3868 Papaver somniferum HOM05D006678 ORTHO05D008388 7.7e-37 157.1 114 69.3
TWI38G1314 Tripterygium wilfordii HOM05D006678 ORTHO05D008388 7.7e-37 157.1 112 70.5
CSS0031072 Camellia sinensis var. sinensis HOM05D006678 ORTHO05D008388 1.0e-36 156.8 115 66.1
TPR.G27187 Trifolium pratense HOM05D006678 ORTHO05D008388 1.0e-36 156.8 115 67.8
TWI39G0757 Tripterygium wilfordii HOM05D006678 ORTHO05D008388 1.7e-36 156.0 112 70.5
SGA_v2.0_scaffold50G18440 Striga asiatica HOM05D006678 ORTHO05D008388 2.9e-36 155.2 104 70.2
Hund09791 Selenicereus undatus HOM05D006678 ORTHO05D008388 5.0e-36 154.5 112 65.2
unitig_90.g27534 Utricularia gibba HOM05D006678 ORTHO05D008388 5.0e-36 154.5 112 69.6
Rhsim03G0221400 Rhododendron simsii HOM05D006678 ORTHO05D008388 1.1e-35 153.3 114 64.0
Solyc03g097010.3 Solanum lycopersicum HOM05D006678 ORTHO05D008388 1.1e-35 153.3 113 67.3
Sopen03g027760 Solanum pennellii HOM05D006678 ORTHO05D008388 1.1e-35 153.3 113 67.3
CANSAT21G1467 Cannabis sativa HOM05D006678 ORTHO05D008388 1.9e-35 152.5 112 67.9
vmacro06510 Vaccinium macrocarpon HOM05D006678 ORTHO05D008388 3.2e-35 151.8 121 61.2
Sabra13G0070800 Salix brachista HOM05D006678 ORTHO05D008388 7.2e-35 150.6 115 65.2
Cc02_g00280 Coffea canephora HOM05D006678 ORTHO05D008388 1.2e-34 149.8 119 60.5
Migut.F00948 Erythranthe guttata HOM05D006678 ORTHO05D008388 1.2e-34 149.8 112 66.1
CSS0016806 Camellia sinensis var. sinensis HOM05D006678 ORTHO05D008388 2.1e-34 149.1 126 59.5
ATR0829G044 Amborella trichopoda HOM05D006678 ORTHO05D008388 2.7e-34 148.7 99 69.7
EL10Ac3g05077 Beta vulgaris HOM05D006678 ORTHO05D008388 2.7e-34 148.7 111 64.9
Hma1.2p1_1680F.1_g297200 Hydrangea macrophylla HOM05D006678 ORTHO05D008388 2.7e-34 148.7 113 63.7
SalBow2G2234 Salvia bowleyana HOM05D006678 ORTHO05D008388 4.7e-34 147.9 82 76.8
CDE06G2089 Ceratophyllum demersum HOM05D006678 ORTHO05D008388 1.0e-33 146.7 75 84.0
CDE03G0140 Ceratophyllum demersum HOM05D006678 ORTHO05D008388 3.0e-33 145.2 76 82.9
AUR62002062 Chenopodium quinoa HOM05D006678 ORTHO05D008388 3.0e-33 145.2 111 64.0
AUR62028176 Chenopodium quinoa HOM05D006678 ORTHO05D008388 5.1e-33 144.4 111 63.1
Gorai.013G182200 Gossypium raimondii HOM05D006678 ORTHO05D008388 2.0e-32 142.5 110 62.7
Os08g0161700 Oryza sativa ssp. japonica HOM05D006678 ORTHO05D008388 2.0e-32 142.5 113 60.2
Zm00001eb172200 Zea mays HOM05D006678 ORTHO05D008388 1.3e-31 139.8 109 64.2
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 3.7e-31 138.3 66 92.4
Oeu063732.2 Olea europaea HOM05D006678 ORTHO05D008388 3.7e-31 138.3 167 47.3
CAN.G1131.11 Capsicum annuum HOM05D006678 ORTHO05D008388 1.1e-30 136.7 66 90.9
ECA232G0519 Erigeron canadensis HOM05D006678 ORTHO05D008388 1.2e-29 133.3 100 64.0
vmacro22173 Vaccinium macrocarpon HOM05D006678 ORTHO05D008388 2.6e-29 132.1 64 90.6
Nitab4.5_0000011g0100 Nicotiana tabacum HOM05D006678 ORTHO05D008388 4.5e-29 131.3 65 90.8
AagrBONN_evm.TU.Sc2ySwM_368.1248 Anthoceros agrestis HOM05D006678 ORTHO05D008388 7.2e-27 124.0 74 70.3
Pp3c24_2620 Physcomitrium patens HOM05D006678 ORTHO05D008388 1.2e-26 123.2 99 59.6
Duzib128G0155 Durio zibethinus HOM05D006678 ORTHO05D008388 1.6e-26 122.9 77 72.7
SMO239G0055 Selaginella moellendorffii HOM05D006678 ORTHO05D008388 1.6e-26 122.9 72 70.8
Ah.13g072760 Amaranthus hybridus HOM05D006678 ORTHO05D008388 6.1e-26 120.9 67 85.1
Mapoly0006s0269 Marchantia polymorpha HOM05D006678 ORTHO05D008388 8.0e-26 120.6 81 65.4
SEGI_28569 Sequoiadendron giganteum HOM05D006678 ORTHO05D008388 8.0e-26 120.6 62 85.5
Pp3c23_13320 Physcomitrium patens HOM05D006678 ORTHO05D008388 3.0e-25 118.6 102 59.8
PRCOL_00006130 Prasinoderma coloniale HOM05D006678 ORTHO05D008388 3.0e-17 92.0 84 52.4
Gohir.D13G160300 Gossypium hirsutum HOM05D006678 ORTHO05D008388 2.0e-16 89.4 73 63.0
Cre03.g178250 Chlamydomonas reinhardtii HOM05D006678 ORTHO05D008388 1.3e-15 86.7 81 53.1
Zm00001eb415610 Zea mays HOM05D006678 ORTHO05D008388 2.4e-14 82.4 71 60.6
Sc06g0002530 Simmondsia chinensis HOM05D002239 ORTHO05D002408 4.1e-14 81.6 76 55.3
arahy.Tifrunner.gnm1.ann1.GV73NI Arachis hypogaea HOM05D006678 ORTHO05D008388 2.7e-13 79.0 78 56.4
CBR_g6679 Chara braunii HOM05D006678 ORTHO05D008388 6.8e-09 64.3 35 74.3


User provided reference genes

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