Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 3.9e-296 1020.8 538 100.0
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 8.2e-286 986.5 538 94.8
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 1.6e-278 962.2 538 93.9
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 4.8e-278 960.7 538 94.1
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 1.8e-277 958.7 539 94.8
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 4.5e-276 954.1 548 93.1
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 3.8e-275 951.0 538 93.9
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 1.4e-274 949.1 555 92.1
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 5.7e-271 937.2 538 91.8
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 8.2e-270 933.3 561 88.9
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 8.0e-257 890.2 542 86.0
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.3e-227 793.1 531 77.2
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.7e-227 792.7 538 77.5
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 8.6e-227 790.4 538 76.8
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 8.6e-227 790.4 538 77.3
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.5e-226 789.6 538 76.4
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 3.3e-226 788.5 544 75.0
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 4.3e-226 788.1 542 76.4
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 4.3e-226 788.1 538 76.4
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 7.3e-226 787.3 516 78.1
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 1.2e-225 786.6 534 76.0
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 6.1e-225 784.3 501 79.2
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 8.0e-225 783.9 541 75.4
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 1.4e-224 783.1 548 74.5
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 1.8e-224 782.7 538 75.1
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 3.1e-224 781.9 505 80.2
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 1.2e-223 780.0 541 75.6
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.5e-223 779.6 538 76.4
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.5e-223 779.6 532 75.9
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 2.0e-223 779.2 501 78.8
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 2.6e-223 778.9 541 75.2
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 3.4e-223 778.5 503 78.3
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 1.3e-222 776.5 505 78.0
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 2.2e-222 775.8 504 79.6
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 1.4e-221 773.1 511 77.9
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.2e-220 770.0 536 75.4
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-220 770.0 501 78.6
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 1.6e-220 769.6 534 75.1
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 1.6e-220 769.6 541 73.2
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 4.6e-220 768.1 531 73.6
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 7.8e-220 767.3 501 77.4
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 7.8e-220 767.3 504 77.6
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.3e-219 766.5 498 76.9
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 1.3e-219 766.5 503 78.1
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 1.3e-219 766.5 531 73.4
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 1.7e-219 766.1 541 75.0
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 3.0e-219 765.4 541 73.8
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 5.0e-219 764.6 504 77.2
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 6.6e-219 764.2 504 76.6
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 1.5e-218 763.1 531 73.3
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 2.5e-218 762.3 502 76.9
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 7.3e-218 760.8 545 74.3
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 1.2e-217 760.0 548 73.7
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 4.7e-217 758.1 497 77.1
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 6.8e-216 754.2 512 76.6
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 1.2e-215 753.4 517 74.1
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.2e-215 753.4 536 73.1
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 3.4e-215 751.9 504 74.6
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 7.5e-215 750.7 540 72.8
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.2e-214 749.2 550 71.6
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 2.9e-214 748.8 499 78.0
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 2.1e-212 742.7 529 73.7
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 1.7e-211 739.6 500 75.0
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 9.5e-210 733.8 555 69.7
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 9.5e-210 733.8 541 70.2
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.6e-209 731.9 536 71.8
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.1e-208 728.8 536 71.5
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 4.4e-207 724.9 501 74.5
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 9.9e-207 723.8 536 70.9
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 2.9e-206 722.2 504 75.8
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 1.4e-205 719.9 627 63.2
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 1.9e-205 719.5 505 71.7
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 7.1e-205 717.6 535 71.2
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.3e-203 713.4 501 74.3
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 3.9e-203 711.8 537 71.7
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 5.1e-203 711.4 503 74.8
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 1.1e-202 710.3 501 74.1
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 1.5e-202 709.9 538 69.7
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.5e-202 709.9 641 62.2
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 4.0e-200 701.8 503 73.6
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 8.4e-198 694.1 538 69.0
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 7.8e-196 687.6 448 77.5
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 7.3e-194 681.0 541 66.4
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.3e-187 660.2 592 62.5
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 6.6e-187 657.9 503 70.2
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 8.7e-187 657.5 561 62.6
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.1e-186 657.1 504 66.1
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 1.6e-185 653.3 519 67.1
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 3.6e-185 652.1 496 67.7
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 2.4e-184 649.4 505 66.3
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 1.2e-183 647.1 360 95.0
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 4.2e-181 638.6 475 70.3
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 3.7e-177 625.5 419 77.6
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 6.9e-176 621.3 537 60.3
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 6.9e-176 621.3 537 60.3
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 2.1e-172 609.8 435 73.8
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 9.0e-168 594.3 484 63.8
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 4.3e-162 575.5 473 66.6
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 6.3e-161 571.6 520 57.7
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 7.7e-159 564.7 397 73.3
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 8.5e-158 561.2 486 59.1
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 2.6e-151 539.7 369 78.0
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 7.2e-149 531.6 389 72.5
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 1.3e-142 510.8 335 76.4
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 2.5e-125 453.4 319 74.3
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 4.2e-117 426.0 240 92.9
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.1e-109 401.4 249 79.5
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 2.5e-109 400.2 303 68.3
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 1.8e-107 394.0 507 44.0
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 4.9e-105 386.0 426 55.6
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 3.1e-99 366.7 487 43.9
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 2.6e-90 337.0 484 41.7
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 6.4e-73 279.3 311 53.4
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 1.0e-62 245.4 173 71.1
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 1.9e-53 214.5 494 35.2
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 4.2e-48 196.8 521 32.2
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 6.1e-47 193.0 487 33.3
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 1.3e-46 191.8 199 54.8
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 5.9e-42 176.4 118 75.4
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 5.7e-37 159.8 273 41.8
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 1.7e-36 158.3 467 32.3
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 2.4e-35 154.5 445 31.7
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 3.1e-35 154.1 129 62.8
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 7.7e-34 149.4 455 31.9
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.8e-27 128.3 286 36.4
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 2.4e-27 127.9 286 36.7
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 3.1e-27 127.5 294 35.4
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 7.0e-27 126.3 336 34.5
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-24 118.6 221 39.4
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 4.2e-24 117.1 86 62.8
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-21 108.6 196 40.3
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.5e-21 108.6 74 68.9
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 7.5e-21 106.3 360 30.0
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 2.8e-20 104.4 323 28.2
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 3.7e-20 104.0 207 38.6
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 2.4e-19 101.3 239 31.0
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 4.1e-19 100.5 401 30.2
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 4.1e-19 100.5 413 30.3
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 5.3e-19 100.1 354 30.2
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 9.1e-19 99.4 63 73.0
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-18 98.6 142 43.0
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 4.5e-18 97.1 200 39.5
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 5.0e-17 93.6 142 41.5
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 1.5e-16 92.0 302 28.1
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 3.2e-16 90.9 312 29.8
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 4.7e-15 87.0 305 30.5
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 3.1e-11 74.3 141 36.9
Pp3c24_2440 Physcomitrium patens HOM05D004787 ORTHO05D313483 1.4e-06 58.9 84 44.0
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 3.0e-06 57.8 32 81.2


User provided reference genes

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