Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 4.4e-248 861.3 595 100.0
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 2.3e-204 716.1 596 82.6
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 2.5e-195 686.0 592 85.1
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 1.3e-191 673.7 599 85.3
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 1.6e-189 666.8 597 84.9
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 7.3e-187 657.9 595 83.9
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 2.7e-181 639.4 595 81.3
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 1.8e-180 636.7 596 82.4
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 1.9e-179 633.3 595 81.8
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 2.7e-173 612.8 597 81.9
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 3.3e-171 605.9 597 81.7
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 9.6e-171 604.4 597 81.6
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 5.3e-169 598.6 422 77.5
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 1.6e-165 587.0 595 81.2
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 1.6e-165 587.0 595 81.2
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 9.7e-163 577.8 576 81.9
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 3.8e-127 459.5 590 67.5
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 5.9e-120 435.6 600 64.5
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 9.6e-86 322.0 467 58.2
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 3.1e-84 317.0 514 57.8
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 2.0e-83 314.3 591 54.5
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 4.9e-82 309.7 591 55.0
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 6.4e-82 309.3 503 61.4
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 8.4e-82 308.9 593 56.2
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 1.9e-81 307.8 547 54.8
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 7.1e-81 305.8 592 53.2
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 3.9e-79 300.1 517 58.2
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 2.5e-78 297.4 302 52.0
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 1.3e-77 295.0 433 44.8
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 1.6e-77 294.7 552 56.3
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 6.2e-77 292.7 520 55.8
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 1.8e-76 291.2 527 58.1
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 6.9e-76 289.3 515 56.3
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 9.0e-76 288.9 520 57.3
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 1.5e-75 288.1 428 44.9
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 2.0e-75 287.7 616 50.3
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 1.3e-74 285.0 372 46.0
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 2.9e-74 283.9 580 53.8
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.1e-73 282.0 441 41.7
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 1.1e-73 282.0 441 41.7
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 1.1e-73 282.0 579 51.3
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.6e-72 278.1 557 50.6
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 2.7e-72 277.3 598 48.3
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 3.5e-72 276.9 401 42.4
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 6.0e-72 276.2 452 57.1
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 7.9e-72 275.8 296 50.7
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 1.3e-71 275.0 479 55.7
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 1.3e-71 275.0 470 60.6
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.1e-71 273.1 519 52.8
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 8.7e-71 272.3 474 55.5
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 5.6e-70 269.6 453 57.8
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 7.4e-70 269.2 457 57.8
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 7.4e-70 269.2 593 47.4
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 6.2e-69 266.2 311 45.7
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 3.4e-67 260.4 560 51.2
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 1.3e-66 258.5 455 55.6
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 1.3e-66 258.5 599 46.7
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 4.9e-66 256.5 453 55.8
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 8.4e-66 255.8 602 49.3
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 1.9e-65 254.6 599 47.7
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 1.9e-65 254.6 529 53.3
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 2.4e-65 254.2 599 46.6
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 2.4e-65 254.2 481 55.9
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 4.2e-65 253.4 465 47.1
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 5.5e-65 253.1 456 49.3
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 7.1e-65 252.7 454 53.3
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 9.3e-65 252.3 390 39.7
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 9.3e-65 252.3 611 45.5
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 2.7e-64 250.8 519 50.3
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 2.7e-64 250.8 536 49.3
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 1.8e-63 248.1 593 45.9
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 2.3e-63 247.7 497 52.5
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 2.3e-63 247.7 458 54.6
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 5.1e-63 246.5 564 49.1
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 6.7e-63 246.1 556 51.8
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 8.7e-63 245.7 430 39.3
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 4.3e-62 243.4 420 36.9
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 7.4e-62 242.7 603 44.8
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 9.6e-62 242.3 590 52.4
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 1.3e-61 241.9 583 46.8
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 1.3e-61 241.9 466 55.2
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 1.3e-61 241.9 610 46.1
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 2.1e-61 241.1 597 51.9
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 8.1e-61 239.2 575 50.3
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 9.0e-60 235.7 460 53.3
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 9.0e-60 235.7 363 40.2
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 1.2e-59 235.3 429 38.7
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 1.2e-59 235.3 593 51.4
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 8.4e-58 229.2 472 51.1
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 1.1e-57 228.8 489 52.8
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 2.5e-57 227.6 254 46.5
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 5.5e-57 226.5 254 46.5
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 7.1e-57 226.1 628 46.2
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 1.8e-55 221.5 528 48.5
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 1.8e-55 221.5 462 33.3
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 3.9e-55 220.3 463 52.1
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 1.1e-54 218.8 478 54.0
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 3.7e-53 213.8 326 39.6
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 1.1e-52 212.2 510 44.3
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 6.9e-52 209.5 383 37.6
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 7.6e-51 206.1 608 44.1
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 1.4e-49 201.8 595 47.6
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 1.2e-48 198.7 405 33.6
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 3.3e-46 190.7 246 42.3
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 2.3e-39 167.9 359 34.0
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 8.2e-37 159.5 248 36.7
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 7.7e-35 152.9 470 47.0
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 5.5e-33 146.7 239 38.9
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 8.2e-29 132.9 232 38.8
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 8.2e-29 132.9 554 26.0
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 7.0e-28 129.8 264 35.2
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 7.0e-28 129.8 307 28.0
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 2.0e-22 111.7 268 34.0
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.3e-21 109.0 285 33.3
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 3.7e-21 107.5 285 31.6
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 3.7e-21 107.5 285 31.6
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 3.1e-20 104.4 279 30.8
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 2.7e-19 101.3 262 30.2
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.0e-18 97.1 355 26.2
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 4.0e-15 87.4 109 45.0
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 4.4e-14 84.0 70 54.3
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 4.5e-11 73.9 178 31.5
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 8.5e-10 69.7 221 25.8
TWI39G0099 Tripterygium wilfordii HOM05D006218 ORTHO05D007338 7.2e-09 66.6 221 26.2
Cpa.g.sc209.39 Carica papaya HOM05D004670 ORTHO05D022223 2.1e-08 65.1 121 33.9
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 2.1e-08 65.1 237 26.6
CSS0040738 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 1.4e-07 62.4 177 27.7
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 1.8e-07 62.0 258 23.3
CSS0036990 Camellia sinensis var. sinensis HOM05D000891 ORTHO05D000761 2.3e-07 61.6 177 27.7
DCAR_006421 Daucus carota HOM05D006218 ORTHO05D007338 2.3e-07 61.6 167 28.1
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 2.3e-07 61.6 99 35.4
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 3.0e-07 61.2 155 31.0
AUR62044649 Chenopodium quinoa HOM05D004670 ORTHO05D008020 3.0e-07 61.2 46 63.0
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 3.0e-07 61.2 51 56.9
A06p17960 Brassica napus HOM05D000424 ORTHO05D000355 4.0e-07 60.8 213 24.9
BraA06t24887Z Brassica rapa HOM05D000424 ORTHO05D000355 4.0e-07 60.8 213 24.9
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 4.0e-07 60.8 69 43.5
AL2G20210 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 6.8e-07 60.1 108 38.0
QL02p015030 Quercus lobata HOM05D006218 ORTHO05D007338 6.8e-07 60.1 212 25.9
CiPaw.08G075100 Carya illinoinensis HOM05D006218 ORTHO05D007338 8.8e-07 59.7 200 26.5
Nitab4.5_0003027g0060 Nicotiana tabacum HOM05D006218 ORTHO05D007338 8.8e-07 59.7 168 26.2
Potri.006G200800 Populus trichocarpa HOM05D006596 ORTHO05D008497 8.8e-07 59.7 229 24.9
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 2.6e-06 58.2 178 25.8
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 2.6e-06 58.2 227 25.1
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 4.4e-06 57.4 228 23.7
arahy.Tifrunner.gnm1.ann1.9489MQ Arachis hypogaea HOM05D006218 ORTHO05D007338 5.7e-06 57.0 168 26.8
CAN.G1202.7 Capsicum annuum HOM05D006218 ORTHO05D007338 5.7e-06 57.0 166 25.9
Potri.005G247200 Populus trichocarpa HOM05D006218 ORTHO05D007338 7.5e-06 56.6 221 29.4
Hma1.2p1_0060F.1_g032840 Hydrangea macrophylla HOM05D006218 ORTHO05D007338 9.8e-06 56.2 223 25.1


User provided reference genes

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