Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 2.6e-168 595.5 346 100.0
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 3.8e-151 538.5 346 83.2
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 6.4e-151 537.7 346 87.6
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 6.4e-151 537.7 349 90.0
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 8.4e-151 537.3 347 91.9
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 7.9e-149 530.8 347 90.2
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 3.0e-148 528.9 349 89.1
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 5.1e-148 528.1 347 87.6
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 1.9e-142 509.6 349 87.4
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 1.0e-140 503.8 347 80.4
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 5.1e-140 501.5 348 84.8
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 2.8e-130 469.2 346 67.1
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.8e-130 469.2 346 76.9
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.4e-129 466.8 346 67.1
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 5.3e-129 464.9 346 67.6
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 1.4e-126 456.8 348 70.4
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 2.7e-125 452.6 300 88.3
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.7e-125 452.6 346 65.0
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.7e-125 452.6 346 65.0
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 7.9e-125 451.1 346 69.4
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 1.0e-124 450.7 341 64.2
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 3.9e-124 448.7 347 64.3
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 5.1e-124 448.4 341 64.8
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 1.1e-123 447.2 344 64.2
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-123 447.2 341 62.8
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 2.0e-123 446.4 344 64.8
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 2.0e-123 446.4 348 64.4
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 2.0e-123 446.4 348 62.9
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 2.6e-123 446.0 347 66.0
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 2.6e-123 446.0 346 74.0
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 4.4e-123 445.3 341 74.2
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.3e-122 443.7 346 64.2
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 4.8e-122 441.8 350 61.7
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 8.2e-122 441.0 343 66.5
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.4e-121 440.3 346 71.7
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.8e-121 439.9 357 61.3
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 2.4e-121 439.5 348 64.4
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 2.4e-121 439.5 351 63.5
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 3.1e-121 439.1 346 64.2
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.1e-121 439.1 341 65.1
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 6.9e-121 438.0 347 61.1
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 9.1e-121 437.6 345 73.3
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.2e-120 437.2 339 64.3
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 2.0e-120 436.4 341 63.9
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 4.5e-120 435.3 344 67.2
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 4.5e-120 435.3 350 63.1
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 5.9e-120 434.9 348 62.6
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 7.7e-120 434.5 346 62.7
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 7.7e-120 434.5 350 65.1
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 1.0e-119 434.1 346 63.0
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 2.2e-119 433.0 346 62.4
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 2.9e-119 432.6 347 62.2
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 4.2e-118 428.7 322 80.1
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 5.5e-118 428.3 346 62.7
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 2.1e-117 426.4 345 62.3
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 2.7e-117 426.0 346 62.7
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 3.6e-117 425.6 346 60.7
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 8.0e-117 424.5 346 60.1
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 8.0e-117 424.5 341 71.0
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 1.0e-116 424.1 349 61.6
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.8e-116 423.3 346 63.6
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.5e-115 420.2 342 61.4
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 2.0e-115 419.9 344 62.5
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.0e-115 419.9 348 71.0
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 5.7e-115 418.3 348 59.5
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 1.3e-114 417.2 351 71.5
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 2.8e-114 416.0 346 64.5
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 8.2e-114 414.5 347 60.8
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 7.0e-113 411.4 354 59.3
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 7.0e-113 411.4 346 61.3
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 9.1e-113 411.0 346 61.0
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 9.1e-113 411.0 342 64.0
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.2e-112 410.6 342 61.1
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 1.2e-112 410.6 343 58.0
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.6e-112 410.2 342 61.1
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 2.0e-112 409.8 346 64.2
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.3e-111 407.1 348 59.8
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.3e-111 407.1 347 61.7
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.7e-111 406.8 282 85.8
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 2.2e-111 406.4 341 62.5
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 6.5e-111 404.8 348 67.2
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 1.1e-110 404.1 346 61.3
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.5e-110 403.7 342 60.2
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.9e-110 403.3 348 60.1
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 2.5e-110 402.9 346 61.8
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 2.5e-110 402.9 340 60.3
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.2e-110 402.5 350 59.7
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.2e-110 402.5 350 59.7
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 4.2e-110 402.1 342 58.5
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 7.2e-110 401.4 368 57.1
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 9.4e-110 401.0 341 69.2
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.1e-109 399.8 345 61.4
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 4.7e-109 398.7 346 60.1
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 8.0e-109 397.9 446 49.6
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.0e-108 397.5 345 60.9
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 1.4e-108 397.1 342 60.8
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.8e-108 396.7 346 59.5
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 5.2e-108 395.2 341 58.1
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 6.7e-108 394.8 341 60.7
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.2e-107 394.0 343 62.1
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 1.5e-107 393.7 278 85.6
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.5e-107 393.7 343 59.2
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 2.0e-107 393.3 341 61.3
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 9.7e-107 391.0 345 57.1
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 9.7e-107 391.0 324 59.0
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 6.3e-106 388.3 342 57.6
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 6.3e-106 388.3 348 59.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 6.3e-106 388.3 352 57.7
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 1.1e-105 387.5 347 62.8
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 4.1e-105 385.6 344 57.8
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 5.3e-105 385.2 348 56.6
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 3.5e-104 382.5 347 59.1
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 2.9e-103 379.4 346 58.4
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.9e-102 376.7 342 54.7
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 7.2e-102 374.8 346 54.0
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 9.4e-102 374.4 344 56.7
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 2.7e-101 372.9 347 54.8
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 3.6e-101 372.5 307 60.6
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 3.0e-100 369.4 425 57.9
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.2e-99 367.5 346 52.3
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.0e-99 366.7 359 65.2
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 3.4e-99 365.9 348 53.2
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.8e-98 362.8 343 53.1
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 1.8e-97 360.1 342 52.9
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 4.1e-97 359.0 356 52.0
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 1.3e-95 354.0 358 53.1
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 2.3e-95 353.2 347 51.3
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 3.3e-94 349.4 348 55.2
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 2.8e-93 346.3 305 61.0
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 5.2e-92 342.0 259 65.3
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 9.8e-91 337.8 341 50.7
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 2.8e-90 336.3 342 49.7
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 4.9e-90 335.5 342 52.0
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 1.1e-89 334.3 292 61.3
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 1.4e-89 334.0 246 85.4
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 1.8e-89 333.6 292 59.6
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 4.1e-89 332.4 342 50.6
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 5.4e-89 332.0 292 60.6
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 5.0e-87 325.5 245 81.6
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.6e-85 320.5 337 49.3
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 4.4e-83 312.4 244 81.6
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 6.0e-80 302.0 346 47.7
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 9.2e-73 278.1 338 42.3
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 1.2e-72 277.7 295 55.3
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 2.7e-72 276.6 339 45.1
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 3.9e-71 272.7 172 75.0
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.5e-70 270.0 244 55.3
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 2.1e-69 266.9 339 39.2
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 4.7e-69 265.8 251 54.6
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 1.7e-66 257.3 277 51.3
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.7e-66 256.1 240 55.8
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 2.1e-64 250.4 239 55.6
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 3.5e-64 249.6 246 55.7
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 1.1e-62 244.6 343 38.5
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 9.5e-62 241.5 145 75.2
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 1.6e-61 240.7 223 57.4
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 4.7e-61 239.2 338 42.6
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 1.7e-55 220.7 282 42.6
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.3e-55 220.3 129 76.7
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.3e-54 216.5 280 43.2
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 3.0e-47 193.4 264 39.4
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.6e-47 192.2 120 72.5
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 7.3e-46 188.7 257 40.9
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 8.4e-42 175.3 105 76.2
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 3.8e-34 149.8 114 67.5
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 3.1e-28 130.2 102 61.8
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.2e-24 118.2 88 71.6
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.6e-24 116.3 90 64.4
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.0e-23 113.6 90 63.3
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.8e-21 107.1 346 24.6
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 3.8e-18 96.7 53 73.6
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.9e-17 94.4 57 73.7
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 4.8e-13 79.7 102 35.3
BcaC02g08620 Brassica carinata HOM05D004071 ORTHO05D004501 1.3e-10 71.6 45 77.8
PRCOL_00004263 Prasinoderma coloniale HOM05D068002 ORTHO05D004501 6.5e-10 69.3 409 21.5
Haze_14102 Corylus avellana HOM05D004071 ORTHO05D004501 1.9e-09 67.8 75 58.7
arahy.Tifrunner.gnm1.ann1.FI956K Arachis hypogaea HOM05D004071 ORTHO05D004501 4.7e-08 63.2 134 28.4
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 1.4e-07 61.6 165 26.1
CBR_g42155 Chara braunii HOM05D004071 ORTHO05D004501 5.1e-07 59.7 157 29.9


User provided reference genes

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